Clone Name | bags9g17 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ277210.1|ASA277210 Avena sativa mRNA for chlorophyll synthase (chlG gene) Length = 1428 Score = 714 bits (360), Expect = 0.0 Identities = 463/496 (93%), Gaps = 1/496 (0%) Strand = Plus / Plus Query: 1 tgggtattattgttagcaggtcttgggttgggtgctttgttagnacgtatgggcagggca 60 |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| Sbjct: 532 tgggtattattgttaggaggtcttgggttgggtgctttgttag-acatatgggcagggca 590 Query: 61 tgattttcctattattttttaccttgctctgggtgggtccttgctttcttacatatattc 120 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 591 tgattttcctattattttttaccttgctctgggtggatccttactttcttacatatattc 650 Query: 121 agcaccgcctctcaagctcaagcagaacggatggataggaaactttgctcttggtgcgag 180 |||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 651 agcaccacctctcaagctcaagcagaatggatggataggaaattttgctcttggtgcgag 710 Query: 181 ttacattggcttgccctggtgggctggccaggcgttatttggaactcttactcctgatat 240 ||| || |||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 711 ttatatcggcttgccctggtgggctggccaggcactattcggaactcttactcctgatat 770 Query: 241 tgttgtcctaactactctgtacagcatagctgggctagggattgccatcgtaaatgattt 300 ||| ||||||||| ||||||||||||||||||| |||||||| || ||||||||||| Sbjct: 771 tgtggtcctaacttgcttgtacagcatagctgggcttgggattgctattgtaaatgattt 830 Query: 301 taagagtattgagggggatagaactctgggacttcagtcacttcctgttgcttttggtat 360 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 831 taagagtattgagggggatagaactctgggactacagtcacttcctgttgcttttggtat 890 Query: 361 ggacactgcaaaatggatatgtgttggagcaatcgacatcactcaattatctgttgcagc 420 ||| || || ||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 891 ggaaaccgccaaatggatatgtgttggagcaattgacatcacccaattatctgttgcagc 950 Query: 421 ctacctcctgagcactggcaagctgtattatgccttggcactagttggactgacaattcc 480 |||||| ||||||| |||||||||||||||||| |||||||| ||||||| |||||||| Sbjct: 951 ttacctcttgagcaccggcaagctgtattatgccctggcactacttggactaacaattcc 1010 Query: 481 ccaggtgatcttgcag 496 |||||||||||||||| Sbjct: 1011 ccaggtgatcttgcag 1026
>dbj|AK099004.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108A17, full insert sequence Length = 1599 Score = 521 bits (263), Expect = e-145 Identities = 429/483 (88%), Gaps = 1/483 (0%) Strand = Plus / Plus Query: 10 ttgttagcaggtcttgggttgggtgctttgttagnacgtatgggcagggcatgattttcc 69 ||||||||||| ||||| |||||||| |||||| | ||||||||||| ||||||||||| Sbjct: 566 ttgttagcagggcttggcctgggtgctctgttag-atgtatgggcaggacatgattttcc 624 Query: 70 tattattttttaccttgctctgggtgggtccttgctttcttacatatattcagcaccgcc 129 |||||||||||| |||||| | |||||||||||||||||||||||||||||||| || || Sbjct: 625 tattattttttatcttgctgttggtgggtccttgctttcttacatatattcagctccacc 684 Query: 130 tctcaagctcaagcagaacggatggataggaaactttgctcttggtgcgagttacattgg 189 ||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| Sbjct: 685 tctgaagctcaagcagaatggatggattggaaactttgctcttggtgcgagctacattgg 744 Query: 190 cttgccctggtgggctggccaggcgttatttggaactcttactcctgatattgttgtcct 249 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 745 cttgccctggtgggctggccaggcattatttggaacccttactcctgatattgttgtcct 804 Query: 250 aactactctgtacagcatagctgggctagggattgccatcgtaaatgattttaagagtat 309 ||| || |||| ||||||||||||||||||||||| || |||||||| ||||||||| | Sbjct: 805 gacttctttgtatagcatagctgggctagggattgctattgtaaatgactttaagagtgt 864 Query: 310 tgagggggatagaactctgggacttcagtcacttcctgttgcttttggtatggacactgc 369 |||||| |||||| ||||||| ||||||||||| || ||||||||||||||||| ||||| Sbjct: 865 tgagggagatagagctctggggcttcagtcactcccggttgcttttggtatggaaactgc 924 Query: 370 aaaatggatatgtgttggagcaatcgacatcactcaattatctgttgcagcctacctcct 429 ||| ||||||||||| ||||| || ||||| ||||||||||| ||||||| |||||| | Sbjct: 925 aaagtggatatgtgtaggagcgattgacataactcaattatccgttgcaggctacctttt 984 Query: 430 gagcactggcaagctgtattatgccttggcactagttggactgacaattccccaggtgat 489 || | ||||||| ||||||||| ||||||| | ||||| |||||||| |||||| | Sbjct: 985 cagttcaggcaagccttattatgccctggcactgctaggactcacaattcctcaggtggt 1044 Query: 490 ctt 492 ||| Sbjct: 1045 ctt 1047
>dbj|AK068855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169I11, full insert sequence Length = 1672 Score = 521 bits (263), Expect = e-145 Identities = 429/483 (88%), Gaps = 1/483 (0%) Strand = Plus / Plus Query: 10 ttgttagcaggtcttgggttgggtgctttgttagnacgtatgggcagggcatgattttcc 69 ||||||||||| ||||| |||||||| |||||| | ||||||||||| ||||||||||| Sbjct: 614 ttgttagcagggcttggcctgggtgctctgttag-atgtatgggcaggacatgattttcc 672 Query: 70 tattattttttaccttgctctgggtgggtccttgctttcttacatatattcagcaccgcc 129 |||||||||||| |||||| | |||||||||||||||||||||||||||||||| || || Sbjct: 673 tattattttttatcttgctgttggtgggtccttgctttcttacatatattcagctccacc 732 Query: 130 tctcaagctcaagcagaacggatggataggaaactttgctcttggtgcgagttacattgg 189 ||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| Sbjct: 733 tctgaagctcaagcagaatggatggattggaaactttgctcttggtgcgagctacattgg 792 Query: 190 cttgccctggtgggctggccaggcgttatttggaactcttactcctgatattgttgtcct 249 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 793 cttgccctggtgggctggccaggcattatttggaacccttactcctgatattgttgtcct 852 Query: 250 aactactctgtacagcatagctgggctagggattgccatcgtaaatgattttaagagtat 309 ||| || |||| ||||||||||||||||||||||| || |||||||| ||||||||| | Sbjct: 853 gacttctttgtatagcatagctgggctagggattgctattgtaaatgactttaagagtgt 912 Query: 310 tgagggggatagaactctgggacttcagtcacttcctgttgcttttggtatggacactgc 369 |||||| |||||| ||||||| ||||||||||| || ||||||||||||||||| ||||| Sbjct: 913 tgagggagatagagctctggggcttcagtcactcccggttgcttttggtatggaaactgc 972 Query: 370 aaaatggatatgtgttggagcaatcgacatcactcaattatctgttgcagcctacctcct 429 ||| ||||||||||| ||||| || ||||| ||||||||||| ||||||| |||||| | Sbjct: 973 aaagtggatatgtgtaggagcgattgacataactcaattatccgttgcaggctacctttt 1032 Query: 430 gagcactggcaagctgtattatgccttggcactagttggactgacaattccccaggtgat 489 || | ||||||| ||||||||| ||||||| | ||||| |||||||| |||||| | Sbjct: 1033 cagttccggcaagccttattatgccctggcactgctaggactcacaattcctcaggtggt 1092 Query: 490 ctt 492 ||| Sbjct: 1093 ctt 1095
>gb|AY108751.1| Zea mays PCO143366 mRNA sequence Length = 927 Score = 492 bits (248), Expect = e-136 Identities = 365/404 (90%) Strand = Plus / Plus Query: 51 gggcagggcatgattttcctattattttttaccttgctctgggtgggtccttgctttctt 110 ||||||| ||||||||||||||| | ||||| |||||| ||||||| ||||| ||||||| Sbjct: 1 gggcaggacatgattttcctattgtgttttatcttgctgtgggtggctccttactttctt 60 Query: 111 acatatattcagcaccgcctctcaagctcaagcagaacggatggataggaaactttgctc 170 |||||||||||||||| |||||||||||||||||||| |||||||| || ||||| |||| Sbjct: 61 acatatattcagcaccacctctcaagctcaagcagaatggatggattgggaacttcgctc 120 Query: 171 ttggtgcgagttacattggcttgccctggtgggctggccaggcgttatttggaactctta 230 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgggtgcgagttacatcagcttgccctggtgggctggccaggcgttatttggaactctta 180 Query: 231 ctcctgatattgttgtcctaactactctgtacagcatagctgggctagggattgccatcg 290 | || ||||| ||||| | |||||| |||||||||||||||||||||||||||| || | Sbjct: 181 caccagatatcattgtcttgactactttgtacagcatagctgggctagggattgctattg 240 Query: 291 taaatgattttaagagtattgagggggatagaactctgggacttcagtcacttcctgttg 350 |||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||| Sbjct: 241 taaatgatttcaagagtattgaaggggataggactctggggcttcagtcacttcctgttg 300 Query: 351 cttttggtatggacactgcaaaatggatatgtgttggagcaatcgacatcactcaattat 410 ||||||| ||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 301 cttttgggatggaaactgcaaaatggatttgtgttggagcaattgatatcactcaattat 360 Query: 411 ctgttgcagcctacctcctgagcactggcaagctgtattatgcc 454 ||||||||| ||||| ||||||| || ||||||||||||||| Sbjct: 361 ctgttgcaggttacctattgagcaccggtaagctgtattatgcc 404
>dbj|AK060912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F12, full insert sequence Length = 1073 Score = 468 bits (236), Expect = e-128 Identities = 377/424 (88%) Strand = Plus / Plus Query: 69 ctattattttttaccttgctctgggtgggtccttgctttcttacatatattcagcaccgc 128 ||||||||||||| |||||| | |||||||||||||||||||||||||||||||| || | Sbjct: 1 ctattattttttatcttgctgttggtgggtccttgctttcttacatatattcagctccac 60 Query: 129 ctctcaagctcaagcagaacggatggataggaaactttgctcttggtgcgagttacattg 188 |||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| Sbjct: 61 ctctgaagctcaagcagaatggatggattggaaactttgctcttggtgcgagctacattg 120 Query: 189 gcttgccctggtgggctggccaggcgttatttggaactcttactcctgatattgttgtcc 248 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 121 gcttgccctggtgggctggccaggcattatttggaacccttactcctgatattgttgtcc 180 Query: 249 taactactctgtacagcatagctgggctagggattgccatcgtaaatgattttaagagta 308 | ||| || |||| ||||||||||||||||||||||| || |||||||| ||||||||| Sbjct: 181 tgacttctttgtatagcatagctgggctagggattgctattgtaaatgactttaagagtg 240 Query: 309 ttgagggggatagaactctgggacttcagtcacttcctgttgcttttggtatggacactg 368 ||||||| |||||| ||||||| ||||||||||| || ||||||||||||||||| |||| Sbjct: 241 ttgagggagatagagctctggggcttcagtcactcccggttgcttttggtatggaaactg 300 Query: 369 caaaatggatatgtgttggagcaatcgacatcactcaattatctgttgcagcctacctcc 428 |||| ||||||||||| ||||| || ||||| ||||||||||| ||||||| |||||| Sbjct: 301 caaagtggatatgtgtaggagcgattgacataactcaattatccgttgcaggctaccttt 360 Query: 429 tgagcactggcaagctgtattatgccttggcactagttggactgacaattccccaggtga 488 | || | ||||||| ||||||||| ||||||| | ||||| |||||||| |||||| Sbjct: 361 tcagttccggcaagccttattatgccctggcactgctaggactcacaattcctcaggtgg 420 Query: 489 tctt 492 |||| Sbjct: 421 tctt 424
>gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J17, complete sequence Length = 141598 Score = 113 bits (57), Expect = 7e-22 Identities = 75/81 (92%) Strand = Plus / Plus Query: 52 ggcagggcatgattttcctattattttttaccttgctctgggtgggtccttgctttctta 111 |||||| ||||||||||||||||||||||| |||||| | |||||||||||||||||||| Sbjct: 19823 ggcaggacatgattttcctattattttttatcttgctgttggtgggtccttgctttctta 19882 Query: 112 catatattcagcaccgcctct 132 |||||||||||| || ||||| Sbjct: 19883 catatattcagctccacctct 19903 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Plus Query: 135 agctcaagcagaacggatggataggaaactttgctcttggtgcgagttacattggcttgc 194 ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct: 20025 agctcaagcagaatggatggattggaaactttgctcttggtgcgagctacattggcttgc 20084 Query: 195 cctggt 200 |||||| Sbjct: 20085 cctggt 20090 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 198 ggtgggctggccaggcgttatttggaactcttactcctgatattgttgtcctaactactc 257 |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| || Sbjct: 20188 ggtgggctggccaggcattatttggaacccttactcctgatattgttgtcctgacttctt 20247 Query: 258 tgtacagcatagctggg 274 |||| |||||||||||| Sbjct: 20248 tgtatagcatagctggg 20264 Score = 101 bits (51), Expect = 3e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 333 ttcagtcacttcctgttgcttttggtatggacactgcaaaatggatatgtgttggagcaa 392 |||||||||| || ||||||||||||||||| |||||||| ||||||||||| ||||| | Sbjct: 20492 ttcagtcactcccggttgcttttggtatggaaactgcaaagtggatatgtgtaggagcga 20551 Query: 393 tcgacatcactcaattatctgttgcag 419 | ||||| ||||||||||| ||||||| Sbjct: 20552 ttgacataactcaattatccgttgcag 20578 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 274 gctagggattgccatcgtaaatgattttaagagtattgagggggatagaactctgggact 333 |||||||||||| || |||||||| ||||||||| ||||||| |||||| ||||||| || Sbjct: 20342 gctagggattgctattgtaaatgactttaagagtgttgagggagatagagctctggggct 20401 Query: 334 tcag 337 |||| Sbjct: 20402 tcag 20405 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 437 ggcaagctgtattatgccttggcactagttggactgacaattccccaggtgatcttgcag 496 ||||||| ||||||||| ||||||| | ||||| |||||||| |||||| |||| ||| Sbjct: 21294 ggcaagccttattatgccctggcactgctaggactcacaattcctcaggtggtctttcag 21353 Query: 497 gtgagctg 504 |||||||| Sbjct: 21354 gtgagctg 21361
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 113 bits (57), Expect = 7e-22 Identities = 75/81 (92%) Strand = Plus / Plus Query: 52 ggcagggcatgattttcctattattttttaccttgctctgggtgggtccttgctttctta 111 |||||| ||||||||||||||||||||||| |||||| | |||||||||||||||||||| Sbjct: 16379386 ggcaggacatgattttcctattattttttatcttgctgttggtgggtccttgctttctta 16379445 Query: 112 catatattcagcaccgcctct 132 |||||||||||| || ||||| Sbjct: 16379446 catatattcagctccacctct 16379466 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Plus Query: 135 agctcaagcagaacggatggataggaaactttgctcttggtgcgagttacattggcttgc 194 ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct: 16379588 agctcaagcagaatggatggattggaaactttgctcttggtgcgagctacattggcttgc 16379647 Query: 195 cctggt 200 |||||| Sbjct: 16379648 cctggt 16379653 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 198 ggtgggctggccaggcgttatttggaactcttactcctgatattgttgtcctaactactc 257 |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| || Sbjct: 16379751 ggtgggctggccaggcattatttggaacccttactcctgatattgttgtcctgacttctt 16379810 Query: 258 tgtacagcatagctggg 274 |||| |||||||||||| Sbjct: 16379811 tgtatagcatagctggg 16379827 Score = 101 bits (51), Expect = 3e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 333 ttcagtcacttcctgttgcttttggtatggacactgcaaaatggatatgtgttggagcaa 392 |||||||||| || ||||||||||||||||| |||||||| ||||||||||| ||||| | Sbjct: 16380055 ttcagtcactcccggttgcttttggtatggaaactgcaaagtggatatgtgtaggagcga 16380114 Query: 393 tcgacatcactcaattatctgttgcag 419 | ||||| ||||||||||| ||||||| Sbjct: 16380115 ttgacataactcaattatccgttgcag 16380141 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 274 gctagggattgccatcgtaaatgattttaagagtattgagggggatagaactctgggact 333 |||||||||||| || |||||||| ||||||||| ||||||| |||||| ||||||| || Sbjct: 16379905 gctagggattgctattgtaaatgactttaagagtgttgagggagatagagctctggggct 16379964 Query: 334 tcag 337 |||| Sbjct: 16379965 tcag 16379968 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 437 ggcaagctgtattatgccttggcactagttggactgacaattccccaggtgatcttgcag 496 ||||||| ||||||||| ||||||| | ||||| |||||||| |||||| |||| ||| Sbjct: 16380857 ggcaagccttattatgccctggcactgctaggactcacaattcctcaggtggtctttcag 16380916 Query: 497 gtgagctg 504 |||||||| Sbjct: 16380917 gtgagctg 16380924
>ref|NM_115041.2| Arabidopsis thaliana prenyltransferase AT3G51820 mRNA, complete cds Length = 1578 Score = 111 bits (56), Expect = 3e-21 Identities = 259/324 (79%), Gaps = 2/324 (0%) Strand = Plus / Plus Query: 83 cttgctctgggtgggtccttgctttcttacatatattcagcaccgcctctcaagctcaag 142 |||||| |||| || || ||||| ||||| ||||| || || || ||||| ||||| || Sbjct: 756 cttgctttgggaggatcattgctatcttatatatactctgctccacctcttaagctaaaa 815 Query: 143 cagaacggatggataggaaactttgctcttggtgcgagttacattggcttgccctggtgg 202 || || |||||| | ||||| ||||| ||||| || || || ||| | ||||| |||||| Sbjct: 816 caaaatggatgggttggaaattttgcacttggagcaagctatattagtttgccatggtgg 875 Query: 203 gctggccaggcgttatttggaactcttactcctgatattgttgtcctaactactc-tgta 261 |||||||| || || ||||| |||||||| || ||| ||||||| ||||| |||| |||| Sbjct: 876 gctggccaagcattgtttggcactcttacgccagatgttgttgttctaac-actcttgta 934 Query: 262 cagcatagctgggctagggattgccatcgtaaatgattttaagagtattgagggggatag 321 ||||||||||||| |||| || ||||| || || || || || ||| |||| || ||||| Sbjct: 935 cagcatagctgggttaggaatagccattgttaacgacttcaaaagtgttgaaggagatag 994 Query: 322 aactctgggacttcagtcacttcctgttgcttttggtatggacactgcaaaatggatatg 381 | | | ||||||||||| || || || |||||||| | || ||||||||||||||||| Sbjct: 995 agcattaggacttcagtctctcccagtagcttttggcaccgaaactgcaaaatggatatg 1054 Query: 382 tgttggagcaatcgacatcactca 405 ||||| || || ||||| ||||| Sbjct: 1055 cgttggtgctatagacattactca 1078
>gb|AY081481.1| Arabidopsis thaliana chlorophyll synthetase (At3g51820) mRNA, complete cds Length = 1203 Score = 111 bits (56), Expect = 3e-21 Identities = 259/324 (79%), Gaps = 2/324 (0%) Strand = Plus / Plus Query: 83 cttgctctgggtgggtccttgctttcttacatatattcagcaccgcctctcaagctcaag 142 |||||| |||| || || ||||| ||||| ||||| || || || ||||| ||||| || Sbjct: 640 cttgctttgggaggatcattgctatcttatatatactctgctccacctcttaagctaaaa 699 Query: 143 cagaacggatggataggaaactttgctcttggtgcgagttacattggcttgccctggtgg 202 || || |||||| | ||||| ||||| ||||| || || || ||| | ||||| |||||| Sbjct: 700 caaaatggatgggttggaaattttgcacttggagcaagctatattagtttgccatggtgg 759 Query: 203 gctggccaggcgttatttggaactcttactcctgatattgttgtcctaactactc-tgta 261 |||||||| || || ||||| |||||||| || ||| ||||||| ||||| |||| |||| Sbjct: 760 gctggccaagcattgtttggcactcttacgccagatgttgttgttctaac-actcttgta 818 Query: 262 cagcatagctgggctagggattgccatcgtaaatgattttaagagtattgagggggatag 321 ||||||||||||| |||| || ||||| || || || || || ||| |||| || ||||| Sbjct: 819 cagcatagctgggttaggaatagccattgttaacgacttcaaaagtgttgaaggagatag 878 Query: 322 aactctgggacttcagtcacttcctgttgcttttggtatggacactgcaaaatggatatg 381 | | | ||||||||||| || || || |||||||| | || ||||||||||||||||| Sbjct: 879 agcattaggacttcagtctctcccagtagcttttggcaccgaaactgcaaaatggatatg 938 Query: 382 tgttggagcaatcgacatcactca 405 ||||| || || ||||| ||||| Sbjct: 939 cgttggtgctatagacattactca 962
>gb|AY042821.1| Arabidopsis thaliana putative chlorophyll synthetase (At3g51820) mRNA, complete cds Length = 1458 Score = 111 bits (56), Expect = 3e-21 Identities = 259/324 (79%), Gaps = 2/324 (0%) Strand = Plus / Plus Query: 83 cttgctctgggtgggtccttgctttcttacatatattcagcaccgcctctcaagctcaag 142 |||||| |||| || || ||||| ||||| ||||| || || || ||||| ||||| || Sbjct: 756 cttgctttgggaggatcattgctatcttatatatactctgctccacctcttaagctaaaa 815 Query: 143 cagaacggatggataggaaactttgctcttggtgcgagttacattggcttgccctggtgg 202 || || |||||| | ||||| ||||| ||||| || || || ||| | ||||| |||||| Sbjct: 816 caaaatggatgggttggaaattttgcacttggagcaagctatattagtttgccatggtgg 875 Query: 203 gctggccaggcgttatttggaactcttactcctgatattgttgtcctaactactc-tgta 261 |||||||| || || ||||| |||||||| || ||| ||||||| ||||| |||| |||| Sbjct: 876 gctggccaagcattgtttggcactcttacgccagatgttgttgttctaac-actcttgta 934 Query: 262 cagcatagctgggctagggattgccatcgtaaatgattttaagagtattgagggggatag 321 ||||||||||||| |||| || ||||| || || || || || ||| |||| || ||||| Sbjct: 935 cagcatagctgggttaggaatagccattgttaacgacttcaaaagtgttgaaggagatag 994 Query: 322 aactctgggacttcagtcacttcctgttgcttttggtatggacactgcaaaatggatatg 381 | | | ||||||||||| || || || |||||||| | || ||||||||||||||||| Sbjct: 995 agcattaggacttcagtctctcccagtagcttttggcaccgaaactgcaaaatggatatg 1054 Query: 382 tgttggagcaatcgacatcactca 405 ||||| || || ||||| ||||| Sbjct: 1055 cgttggtgctatagacattactca 1078
>emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome; segment 1/7 Length = 349391 Score = 69.9 bits (35), Expect = 1e-08 Identities = 83/99 (83%) Strand = Plus / Minus Query: 116 tattcagcaccgcctctcaagctcaagcagaacggatggataggaaactttgctcttggt 175 |||||||| || ||||||||||| || |||||||| ||||||||||||| || ||||| Sbjct: 312689 tattcagccccacctctcaagctgaaacagaacggttggataggaaactacgcgcttggg 312630 Query: 176 gcgagttacattggcttgccctggtgggctggccaggcg 214 || || ||||| | | |||| ||||||||||| |||||| Sbjct: 312629 gccagctacatcgccctgccatggtgggctggtcaggcg 312591
>gb|AF049236.1|AF049236 Arabidopsis thaliana putative transmembrane protein G1p (AtG1), putative nuclear DNA-binding protein G2p (AtG2), Em1 protein (ATEM1), putative chlorophyll synthetase (AtG4), putative transmembrane protein G5p (AtG5), putative acyl-coA dehydrogenase (AtG6), and calcium dependent protein kinase genes, complete cds; and unknown genes Length = 60000 Score = 60.0 bits (30), Expect = 1e-05 Identities = 68/78 (87%), Gaps = 2/78 (2%) Strand = Plus / Minus Query: 198 ggtgggctggccaggcgttatttggaactcttactcctgatattgttgtcctaactactc 257 ||||||||||||| || || ||||| |||||||| || ||| ||||||| ||||| |||| Sbjct: 19720 ggtgggctggccaagcattgtttggcactcttacgccagatgttgttgttctaac-actc 19662 Query: 258 -tgtacagcatagctggg 274 ||||||||||||||||| Sbjct: 19661 ttgtacagcatagctggg 19644 Score = 50.1 bits (25), Expect = 0.009 Identities = 64/77 (83%) Strand = Plus / Minus Query: 329 ggacttcagtcacttcctgttgcttttggtatggacactgcaaaatggatatgtgttgga 388 ||||||||||| || || || |||||||| | || ||||||||||||||||| ||||| Sbjct: 19500 ggacttcagtctctcccagtagcttttggcaccgaaactgcaaaatggatatgcgttggt 19441 Query: 389 gcaatcgacatcactca 405 || || ||||| ||||| Sbjct: 19440 gctatagacattactca 19424
>gb|U19382.1|ATU19382 Arabidopsis thaliana putative chlorophyll synthetase (G4) gene, complete cds Length = 3660 Score = 60.0 bits (30), Expect = 1e-05 Identities = 68/78 (87%), Gaps = 2/78 (2%) Strand = Plus / Plus Query: 198 ggtgggctggccaggcgttatttggaactcttactcctgatattgttgtcctaactactc 257 ||||||||||||| || || ||||| |||||||| || ||| ||||||| ||||| |||| Sbjct: 2006 ggtgggctggccaagcattgtttggcactcttacgccagatgttgttgttctaac-actc 2064 Query: 258 -tgtacagcatagctggg 274 ||||||||||||||||| Sbjct: 2065 ttgtacagcatagctggg 2082 Score = 50.1 bits (25), Expect = 0.009 Identities = 64/77 (83%) Strand = Plus / Plus Query: 329 ggacttcagtcacttcctgttgcttttggtatggacactgcaaaatggatatgtgttgga 388 ||||||||||| || || || |||||||| | || ||||||||||||||||| ||||| Sbjct: 2226 ggacttcagtctctcccagtagcttttggcaccgaaactgcaaaatggatatgcgttggt 2285 Query: 389 gcaatcgacatcactca 405 || || ||||| ||||| Sbjct: 2286 gctatagacattactca 2302
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 122 gcaccgcctctcaagctcaagcagaacgg 150 ||||||||||||||||||||||||||||| Sbjct: 1928779 gcaccgcctctcaagctcaagcagaacgg 1928807
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 56.0 bits (28), Expect = 2e-04 Identities = 85/104 (81%) Strand = Plus / Minus Query: 110 tacatatattcagcaccgcctctcaagctcaagcagaacggatggataggaaactttgct 169 ||||| ||||||||||| || || ||||||||||||||||| ||| | || |||| ||| Sbjct: 771801 tacatctattcagcacccccgctgaagctcaagcagaacggttggctgggcaactatgcc 771742 Query: 170 cttggtgcgagttacattggcttgccctggtgggctggccaggc 213 || ||||| || ||||| | | ||||||||||| |||||||| Sbjct: 771741 ctcggtgccagctacatcgctcttccctggtgggccggccaggc 771698
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 46.1 bits (23), Expect = 0.14 Identities = 68/83 (81%) Strand = Plus / Minus Query: 140 aagcagaacggatggataggaaactttgctcttggtgcgagttacattggcttgccctgg 199 ||||||||||| ||| |||| |||| ||| | ||||| |||||||| | ||| || ||| Sbjct: 4159633 aagcagaacggctggttaggtaactacgctttgggtgctagttacatcgccttaccttgg 4159574 Query: 200 tgggctggccaggcgttatttgg 222 |||||||| || || |||||||| Sbjct: 4159573 tgggctggtcatgctttatttgg 4159551
>gb|AC026470.6| Homo sapiens chromosome 16 clone RP11-44I10, complete sequence Length = 169566 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 59 catgattttcctattatttttt 80 |||||||||||||||||||||| Sbjct: 148604 catgattttcctattatttttt 148625
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 42.1 bits (21), Expect = 2.3 Identities = 72/89 (80%) Strand = Plus / Plus Query: 134 aagctcaagcagaacggatggataggaaactttgctcttggtgcgagttacattggcttg 193 ||||| ||||||||||| ||| | || |||| ||| || || ||||| ||||| | ||| Sbjct: 1521215 aagctgaagcagaacggttggctcgggaactatgccctcggcgcgagctacatcgcgttg 1521274 Query: 194 ccctggtgggctggccaggcgttatttgg 222 || |||||||| ||||| || |||||||| Sbjct: 1521275 ccatggtgggccggccaagccttatttgg 1521303
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 ttcctattattttttaccttg 86 ||||||||||||||||||||| Sbjct: 1483943 ttcctattattttttaccttg 1483923
>gb|AC144816.3| Mus musculus BAC clone RP24-243E15 from chromosome 6, complete sequence Length = 167096 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 ctacctcctgagcactggcaa 441 ||||||||||||||||||||| Sbjct: 105722 ctacctcctgagcactggcaa 105742
>gb|AC122916.4| Mus musculus BAC clone RP23-28F1 from 5, complete sequence Length = 231319 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 ttttcctattattttttacct 84 ||||||||||||||||||||| Sbjct: 87045 ttttcctattattttttacct 87065
>gb|AC127307.3| Mus musculus BAC clone RP23-291E6 from 6, complete sequence Length = 211245 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 421 ctacctcctgagcactggcaa 441 ||||||||||||||||||||| Sbjct: 189919 ctacctcctgagcactggcaa 189899
>gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, complete sequence Length = 224996 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 tgattttcctattatttttta 81 ||||||||||||||||||||| Sbjct: 95981 tgattttcctattatttttta 96001
>emb|AL451124.13| Human DNA sequence from clone RP11-20P5 on chromosome 9 Contains the 3' end of a variant of a novel gene (FLJ31810) and a novel pseudogene (FLJ37424), complete sequence Length = 164291 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 473 acaattccccaggtgatcttg 493 ||||||||||||||||||||| Sbjct: 3499 acaattccccaggtgatcttg 3479
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 ttcctattattttttaccttg 86 ||||||||||||||||||||| Sbjct: 1449912 ttcctattattttttaccttg 1449892
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 ttcctattattttttaccttg 86 ||||||||||||||||||||| Sbjct: 1445979 ttcctattattttttaccttg 1445959
>gb|AC008147.31| Homo sapiens 12 BAC RP3-405J10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115345 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 415 tgcagcctacctcctgagcac 435 ||||||||||||||||||||| Sbjct: 83475 tgcagcctacctcctgagcac 83495
>emb|BX294118.4| Zebrafish DNA sequence from clone DKEYP-38B6, complete sequence Length = 184616 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 590 ccatcaaaccaaataattgaa 610 ||||||||||||||||||||| Sbjct: 9285 ccatcaaaccaaataattgaa 9305
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 aatggatatgtgttggagca 391 |||||||||||||||||||| Sbjct: 56962 aatggatatgtgttggagca 56981
>gb|AE008399.1| Streptococcus pneumoniae R6 section 15 of 184 of the complete genome Length = 12132 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 tctgggacttcagtcacttc 344 |||||||||||||||||||| Sbjct: 5869 tctgggacttcagtcacttc 5850
>gb|AC123610.10| Mus musculus chromosome 9, clone RP23-343M15, complete sequence Length = 206563 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 ctacctcctgagcactggca 440 |||||||||||||||||||| Sbjct: 153185 ctacctcctgagcactggca 153204
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 ggaccttggatattatcatt 536 |||||||||||||||||||| Sbjct: 194841 ggaccttggatattatcatt 194860
>emb|Z92547.1|HS863K19 Human DNA sequence from clone RP5-863K19 on chromosome Xp22.11-22.2 Contains the 5'end of a novel gene, complete sequence Length = 134845 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gacttcagtcacttcctgtt 349 |||||||||||||||||||| Sbjct: 120611 gacttcagtcacttcctgtt 120592
>gb|AE014199.1| Streptococcus agalactiae 2603V/R section 9 of 100 of the complete genome Length = 21433 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 ggaccttggatattatcatt 536 |||||||||||||||||||| Sbjct: 10208 ggaccttggatattatcatt 10227
>emb|Z97339.2|ATFCA4 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 4 Length = 205065 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 atgattttcctattattttt 79 |||||||||||||||||||| Sbjct: 858 atgattttcctattattttt 877
>emb|AL766844.1|SAG766844 Streptococcus agalactiae NEM316 complete genome, segment 2 Length = 240050 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 ggaccttggatattatcatt 536 |||||||||||||||||||| Sbjct: 41819 ggaccttggatattatcatt 41838
>gb|AC151836.3| Mus musculus BAC clone RP23-359F5 from chromosome 14, complete sequence Length = 230502 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 gtcacttcctgttgcttttg 356 |||||||||||||||||||| Sbjct: 149977 gtcacttcctgttgcttttg 149958
>emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in linkage group 5, complete sequence Length = 226730 Score = 40.1 bits (20), Expect = 8.9 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 347 gttgcttttggtatggacactgcaaaatggat 378 |||||||||| |||| |||||||||||||||| Sbjct: 29368 gttgcttttg-tatgcacactgcaaaatggat 29338
>gb|AC154399.5| Mus musculus chromosome 3, clone RP24-295P14, complete sequence Length = 165984 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 tgccctggtgggctggccag 211 |||||||||||||||||||| Sbjct: 161676 tgccctggtgggctggccag 161695
>gb|AC016266.14| Homo sapiens chromosome 15, clone RP11-2C7, complete sequence Length = 149387 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 595 aaaccaaataattgaaatcgtttt 618 |||||||||||||||||| ||||| Sbjct: 68130 aaaccaaataattgaaattgtttt 68107
>gb|AC069540.6| Homo sapiens chromosome 10 clone RP11-344L13, complete sequence Length = 201182 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 aactttgctcttggtgcgag 180 |||||||||||||||||||| Sbjct: 147970 aactttgctcttggtgcgag 147989
>gb|AC018465.8| Homo sapiens BAC clone RP11-350D5 from 2, complete sequence Length = 167073 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 attttcctattattttttac 82 |||||||||||||||||||| Sbjct: 147806 attttcctattattttttac 147787
>gb|AC120114.2| Homo sapiens chromosome 16 clone CTD-2574D22, complete sequence Length = 140666 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 tctgttgcagcctacctcctgagc 433 |||| ||||||||||||||||||| Sbjct: 66806 tctggtgcagcctacctcctgagc 66783
>gb|AC073516.4| Homo sapiens BAC clone RP11-147C20 from 2, complete sequence Length = 85368 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 tttcagaacatgctcccctt 567 |||||||||||||||||||| Sbjct: 37294 tttcagaacatgctcccctt 37275
>gb|AC007376.9|AC007376 Homo sapiens chromosome 14 clone 99E15 containing gene for KIAA 1036, complete CDS, complete sequence Length = 186330 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ccgcctctcaagctcaagca 144 |||||||||||||||||||| Sbjct: 104899 ccgcctctcaagctcaagca 104880
>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome Length = 2160842 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 tctgggacttcagtcacttc 344 |||||||||||||||||||| Sbjct: 168676 tctgggacttcagtcacttc 168657
>emb|CT573040.5| Wallaby DNA sequence from clone MEKBa-454A14, complete sequence Length = 164317 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 tttttcagaaatttcctatt 585 |||||||||||||||||||| Sbjct: 156688 tttttcagaaatttcctatt 156707
>emb|Z97338.2|ATFCA3 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 3 Length = 200252 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 atgattttcctattattttt 79 |||||||||||||||||||| Sbjct: 196854 atgattttcctattattttt 196873
>emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 41 Length = 197419 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 atgattttcctattattttt 79 |||||||||||||||||||| Sbjct: 150331 atgattttcctattattttt 150350
>gb|AC139294.4| Mus musculus BAC clone RP24-239E14 from 14, complete sequence Length = 183363 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 gtcacttcctgttgcttttg 356 |||||||||||||||||||| Sbjct: 32574 gtcacttcctgttgcttttg 32555
>emb|AL626784.11| Mouse DNA sequence from clone RP23-392J14 on chromosome 4, complete sequence Length = 211585 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 ctacctcctgagcactggca 440 |||||||||||||||||||| Sbjct: 88064 ctacctcctgagcactggca 88045
>dbj|AP004782.3| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-103B16, complete sequence Length = 119191 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 cttcagtcacttcctgttgctttt 355 ||||||||| |||||||||||||| Sbjct: 2219 cttcagtcatttcctgttgctttt 2242
>dbj|AP005133.2| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-54L20, complete sequences Length = 86000 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 cttcagtcacttcctgttgctttt 355 ||||||||| |||||||||||||| Sbjct: 64787 cttcagtcatttcctgttgctttt 64810 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,557,176 Number of Sequences: 3902068 Number of extensions: 6557176 Number of successful extensions: 127763 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 127365 Number of HSP's gapped (non-prelim): 386 length of query: 655 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 632 effective length of database: 17,143,297,704 effective search space: 10834564148928 effective search space used: 10834564148928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)