ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9g15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_463780.1| Oryza sativa (japonica cultivar-group), mRNA 391 e-105
2dbj|AK105706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 391 e-105
3gb|AY103840.1| Zea mays PCO125096 mRNA sequence 319 6e-84
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
5dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
6dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
7emb|AJ234834.1|HVU234834 Hordeum vulgare genomic DNA fragment; c... 180 3e-42
8gb|AC121235.20| Medicago truncatula clone mth2-21k24, complete s... 56 1e-04
9gb|AE016828.2| Coxiella burnetii RSA 493, complete genome 42 2.0
10gb|AC008055.7| Homo sapiens 12 BAC RP11-718L23 (Roswell Park Can... 42 2.0
11emb|BX936425.7| Zebrafish DNA sequence from clone CH211-39L24 in... 40 8.1
12gb|AC023951.19| Homo sapiens chromosome 15, clone RP11-815C16, c... 40 8.1
13emb|BX927287.17| Zebrafish DNA sequence from clone DKEY-31N13 in... 40 8.1
14gb|AC069045.11| Homo sapiens chromosome 15, clone RP11-111C2, co... 40 8.1
15dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 40 8.1
16gb|AC171212.3| Gallus gallus BAC clone CH261-72C23 from chromoso... 40 8.1
17gb|AC010739.3| Homo sapiens BAC clone RP11-478M12 from 2, comple... 40 8.1
18gb|AC009268.10| Homo sapiens chromosome 15, clone RP11-74D7, com... 40 8.1
19gb|AF001550.1|HSAF001550 Homo sapiens chromosome 16 BAC clone CI... 40 8.1
20emb|CR759797.14| Zebrafish DNA sequence from clone DKEY-87K14 in... 40 8.1
21gb|AC171061.3| Gallus gallus BAC clone TAM32-9O12 from chromosom... 40 8.1
22gb|AC144543.4| Mus musculus BAC clone RP23-394E9 from 12, comple... 40 8.1
23emb|AL845296.4| Mouse DNA sequence from clone RP23-121B24 on chr... 40 8.1

>ref|XM_463780.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 5346

 Score =  391 bits (197), Expect = e-105
 Identities = 487/584 (83%)
 Strand = Plus / Plus

                                                                        
Query: 11   tgatacaagctcctcttggnttatttcctcgcccttggccttctaatgttgatacctcag 70
            |||||||||||||  |||| || |||||||| ||||||||   ||  |||||| | ||||
Sbjct: 4355 tgatacaagctccctttggattgtttcctcggccttggccacttaccgttgatgcttcag 4414

                                                                        
Query: 71   agggtagcagattcctcaaagtcgtcgaatattttcgcttggtcggtcgagttgtggcga 130
            | || || |||||    || ||| ||||| |||| |||||||| || |||||  |||| |
Sbjct: 4415 aaggcagtagattttctaaggtcatcgaacatttccgcttggttgggcgagtgatggcaa 4474

                                                                        
Query: 131  aagtcttgcaggatggacggcttttagatttgcctttgtcaacagcattttataagctaa 190
            |||| ||||| |||||| | ||||||||||||||| | ||||||||| |||||||||| |
Sbjct: 4475 aagttttgcaagatggaagacttttagatttgcctctatcaacagcactttataagctta 4534

                                                                        
Query: 191  tactcgggcaggagcttgatttattcgacattatctccttcgatgctgagcttggaaaga 250
            |||| || || ||||| || ||||| ||||| ||||| || ||||||||  | |||||||
Sbjct: 4535 tacttggacaagagctggacttatttgacataatctcatttgatgctgaattcggaaaga 4594

                                                                        
Query: 251  cactgcaagaattgcaagttcttgttgagcgtaagaggttctttgagtccagctgtggca 310
            || |||||||| ||||| |||||||||| || ||||||||| |||| ||||  | |||||
Sbjct: 4595 cattgcaagaactgcaaattcttgttgaacggaagaggttccttgaatccacttatggca 4654

                                                                        
Query: 311  aggatcagctaaaagttgcagacttgcgattccgtggagctcctatcgaggacttgtgtt 370
             | |||||||| ||||  | |||||||| ||||||||  |||||||||| || |||||||
Sbjct: 4655 tgaatcagctagaagtcacggacttgcgtttccgtggcactcctatcgaagatttgtgtt 4714

                                                                        
Query: 371  tagattttactcttccaggttttcctgattatgttctcaaagaaggcgagcaaaacacaa 430
            ||||||||||||||||||||| |||||||||| |||| |||||||||||| |||||||||
Sbjct: 4715 tagattttactcttccaggttatcctgattatattcttaaagaaggcgaggaaaacacaa 4774

                                                                        
Query: 431  ttgttaatattcacaacctagaggagtatgtttctttggtagtcgatgcgacactgaagt 490
            |||| |||||| ||||| | || ||||||||| |||||||||| ||||| ||| | || |
Sbjct: 4775 ttgtaaatatttacaacttggaagagtatgttactttggtagtggatgctacagttaaat 4834

                                                                        
Query: 491  cagggattatgaagcaggttgaagctttcagatcaggttttagccaggtcttcgatatct 550
            ||||||| |||| ||| || ||||| || |||||||| |||| ||||||||| || ||||
Sbjct: 4835 cagggataatgaggcaagtcgaagcatttagatcaggatttaaccaggtctttgacatct 4894

                                                        
Query: 551  catccctccaaatattttcacctcaagagcttgactatctaata 594
            |||||||  |||||||||||||| ||||||||||||||||||||
Sbjct: 4895 catccctgaaaatattttcacctgaagagcttgactatctaata 4938



to top

>dbj|AK105706.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E03, full
            insert sequence
          Length = 2561

 Score =  391 bits (197), Expect = e-105
 Identities = 487/584 (83%)
 Strand = Plus / Plus

                                                                        
Query: 11   tgatacaagctcctcttggnttatttcctcgcccttggccttctaatgttgatacctcag 70
            |||||||||||||  |||| || |||||||| ||||||||   ||  |||||| | ||||
Sbjct: 1166 tgatacaagctccctttggattgtttcctcggccttggccacttaccgttgatgcttcag 1225

                                                                        
Query: 71   agggtagcagattcctcaaagtcgtcgaatattttcgcttggtcggtcgagttgtggcga 130
            | || || |||||    || ||| ||||| |||| |||||||| || |||||  |||| |
Sbjct: 1226 aaggcagtagattttctaaggtcatcgaacatttccgcttggttgggcgagtgatggcaa 1285

                                                                        
Query: 131  aagtcttgcaggatggacggcttttagatttgcctttgtcaacagcattttataagctaa 190
            |||| ||||| |||||| | ||||||||||||||| | ||||||||| |||||||||| |
Sbjct: 1286 aagttttgcaagatggaagacttttagatttgcctctatcaacagcactttataagctta 1345

                                                                        
Query: 191  tactcgggcaggagcttgatttattcgacattatctccttcgatgctgagcttggaaaga 250
            |||| || || ||||| || ||||| ||||| ||||| || ||||||||  | |||||||
Sbjct: 1346 tacttggacaagagctggacttatttgacataatctcatttgatgctgaattcggaaaga 1405

                                                                        
Query: 251  cactgcaagaattgcaagttcttgttgagcgtaagaggttctttgagtccagctgtggca 310
            || |||||||| ||||| |||||||||| || ||||||||| |||| ||||  | |||||
Sbjct: 1406 cattgcaagaactgcaaattcttgttgaacggaagaggttccttgaatccacttatggca 1465

                                                                        
Query: 311  aggatcagctaaaagttgcagacttgcgattccgtggagctcctatcgaggacttgtgtt 370
             | |||||||| ||||  | |||||||| ||||||||  |||||||||| || |||||||
Sbjct: 1466 tgaatcagctagaagtcacggacttgcgtttccgtggcactcctatcgaagatttgtgtt 1525

                                                                        
Query: 371  tagattttactcttccaggttttcctgattatgttctcaaagaaggcgagcaaaacacaa 430
            ||||||||||||||||||||| |||||||||| |||| |||||||||||| |||||||||
Sbjct: 1526 tagattttactcttccaggttatcctgattatattcttaaagaaggcgaggaaaacacaa 1585

                                                                        
Query: 431  ttgttaatattcacaacctagaggagtatgtttctttggtagtcgatgcgacactgaagt 490
            |||| |||||| ||||| | || ||||||||| |||||||||| ||||| ||| | || |
Sbjct: 1586 ttgtaaatatttacaacttggaagagtatgttactttggtagtggatgctacagttaaat 1645

                                                                        
Query: 491  cagggattatgaagcaggttgaagctttcagatcaggttttagccaggtcttcgatatct 550
            ||||||| |||| ||| || ||||| || |||||||| |||| ||||||||| || ||||
Sbjct: 1646 cagggataatgaggcaagtcgaagcatttagatcaggatttaaccaggtctttgacatct 1705

                                                        
Query: 551  catccctccaaatattttcacctcaagagcttgactatctaata 594
            |||||||  |||||||||||||| ||||||||||||||||||||
Sbjct: 1706 catccctgaaaatattttcacctgaagagcttgactatctaata 1749



to top

>gb|AY103840.1| Zea mays PCO125096 mRNA sequence
          Length = 1983

 Score =  319 bits (161), Expect = 6e-84
 Identities = 478/584 (81%)
 Strand = Plus / Plus

                                                                        
Query: 11   tgatacaagctcctcttggnttatttcctcgcccttggccttctaatgttgatacctcag 70
            ||||||||||||||||||| || || ||||| ||||||||  |||| |||||||| ||||
Sbjct: 852  tgatacaagctcctcttggattgttccctcgaccttggccacctaaagttgatacttcag 911

                                                                        
Query: 71   agggtagcagattcctcaaagtcgtcgaatattttcgcttggtcggtcgagttgtggcga 130
            | |||||||||||| |||||||  | || ||||| |||||  | |||| |||  | || |
Sbjct: 912  aaggtagcagattcttcaaagttttggagtatttccgcttaataggtcaagtgatcgcaa 971

                                                                        
Query: 131  aagtcttgcaggatggacggcttttagatttgcctttgtcaacagcattttataagctaa 190
            ||||| |||| |||||  | ||||||||||||||||| |||||||| ||||||||||| |
Sbjct: 972  aagtcctgcaagatggcagacttttagatttgcctttatcaacagcgttttataagctta 1031

                                                                        
Query: 191  tactcgggcaggagcttgatttattcgacattatctccttcgatgctgagcttggaaaga 250
            |||| || ||||| |||||||| || |||||  | || || ||| ||||| |||| ||||
Sbjct: 1032 tacttggacaggaacttgatttgtttgacatagtgtcatttgattctgagtttgggaaga 1091

                                                                        
Query: 251  cactgcaagaattgcaagttcttgttgagcgtaagaggttctttgagtccagctgtggca 310
            || |||||||| |||||||||||||||| || |||  |||| |||| ||||  | |||||
Sbjct: 1092 cattgcaagaactgcaagttcttgttgaacgaaagcagttccttgaatccacttctggca 1151

                                                                        
Query: 311  aggatcagctaaaagttgcagacttgcgattccgtggagctcctatcgaggacttgtgtt 370
            || | |||||| |||||||||| ||| | |||| ||| ||| |||| || || |||||||
Sbjct: 1152 agaaccagctacaagttgcagatttgtgtttccatggcgcttctattgaagatttgtgtt 1211

                                                                        
Query: 371  tagattttactcttccaggttttcctgattatgttctcaaagaaggcgagcaaaacacaa 430
            ||||||||||||||||||||| |||||||||||| || ||||| || ||   |  |||||
Sbjct: 1212 tagattttactcttccaggttatcctgattatgtgcttaaagagggtgaaggaggcacaa 1271

                                                                        
Query: 431  ttgttaatattcacaacctagaggagtatgtttctttggtagtcgatgcgacactgaagt 490
            ||||||||||| | ||  |||| |||||| || ||||||| || ||||| ||| | ||||
Sbjct: 1272 ttgttaatatttataatttagaagagtatattactttggtggtggatgctacagttaagt 1331

                                                                        
Query: 491  cagggattatgaagcaggttgaagctttcagatcaggttttagccaggtcttcgatatct 550
            ||||||| | |   |||||||| || || |||||||| ||||  ||||| || || || |
Sbjct: 1332 cagggataaagcgacaggttgaggcatttagatcagggtttaatcaggtgtttgacatgt 1391

                                                        
Query: 551  catccctccaaatattttcacctcaagagcttgactatctaata 594
            |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 1392 catccctccacatattttcacctcaagaacttgactatctaata 1435



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
             complete sequence
          Length = 35954743

 Score =  198 bits (100), Expect = 1e-47
 Identities = 202/236 (85%)
 Strand = Plus / Minus

                                                                         
Query: 199   caggagcttgatttattcgacattatctccttcgatgctgagcttggaaagacactgcaa 258
             |||||||| || ||||| ||||| ||||| || ||||||||  | ||||||||| |||||
Sbjct: 88571 caggagctggacttatttgacataatctcatttgatgctgaattcggaaagacattgcaa 88512

                                                                         
Query: 259   gaattgcaagttcttgttgagcgtaagaggttctttgagtccagctgtggcaaggatcag 318
             ||| ||||| |||||||||| || ||||||||| |||| ||||  | ||||| | |||||
Sbjct: 88511 gaactgcaaattcttgttgaacggaagaggttccttgaatccacttatggcatgaatcag 88452

                                                                         
Query: 319   ctaaaagttgcagacttgcgattccgtggagctcctatcgaggacttgtgtttagatttt 378
             ||| ||||  | |||||||| ||||||||  |||||||||| || |||||||||||||||
Sbjct: 88451 ctagaagtcacggacttgcgtttccgtggcactcctatcgaagatttgtgtttagatttt 88392

                                                                     
Query: 379   actcttccaggttttcctgattatgttctcaaagaaggcgagcaaaacacaattgt 434
             ||||||||||||| |||||||||| |||| |||||||||||| |||||||||||||
Sbjct: 88391 actcttccaggttatcctgattatattcttaaagaaggcgaggaaaacacaattgt 88336



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 148/184 (80%)
 Strand = Plus / Minus

                                                                         
Query: 11    tgatacaagctcctcttggnttatttcctcgcccttggccttctaatgttgatacctcag 70
             |||||||||||||  |||| || |||||||| ||||||||   ||  |||||| | ||||
Sbjct: 88855 tgatacaagctccctttggattgtttcctcggccttggccacttaccgttgatgcttcag 88796

                                                                         
Query: 71    agggtagcagattcctcaaagtcgtcgaatattttcgcttggtcggtcgagttgtggcga 130
             | || || |||||    || ||| ||||| |||| |||||||| || |||||  |||| |
Sbjct: 88795 aaggcagtagattttctaaggtcatcgaacatttccgcttggttgggcgagtgatggcaa 88736

                                                                         
Query: 131   aagtcttgcaggatggacggcttttagatttgcctttgtcaacagcattttataagctaa 190
             |||| ||||| |||||| | ||||||||||||||| | ||||||||| |||||||||| |
Sbjct: 88735 aagttttgcaagatggaagacttttagatttgcctctatcaacagcactttataagctta 88676

                 
Query: 191   tact 194
             ||||
Sbjct: 88675 tact 88672



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                        
Query: 536   aggtcttcgatatctcatccctccaaatattttcacctcaagagcttgactatctaata 594
             ||||||| || |||||||||||  |||||||||||||| ||||||||||||||||||||
Sbjct: 88044 aggtctttgacatctcatccctgaaaatattttcacctgaagagcttgactatctaata 87986



to top

>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1370C05
          Length = 148271

 Score =  198 bits (100), Expect = 1e-47
 Identities = 202/236 (85%)
 Strand = Plus / Minus

                                                                         
Query: 199   caggagcttgatttattcgacattatctccttcgatgctgagcttggaaagacactgcaa 258
             |||||||| || ||||| ||||| ||||| || ||||||||  | ||||||||| |||||
Sbjct: 83180 caggagctggacttatttgacataatctcatttgatgctgaattcggaaagacattgcaa 83121

                                                                         
Query: 259   gaattgcaagttcttgttgagcgtaagaggttctttgagtccagctgtggcaaggatcag 318
             ||| ||||| |||||||||| || ||||||||| |||| ||||  | ||||| | |||||
Sbjct: 83120 gaactgcaaattcttgttgaacggaagaggttccttgaatccacttatggcatgaatcag 83061

                                                                         
Query: 319   ctaaaagttgcagacttgcgattccgtggagctcctatcgaggacttgtgtttagatttt 378
             ||| ||||  | |||||||| ||||||||  |||||||||| || |||||||||||||||
Sbjct: 83060 ctagaagtcacggacttgcgtttccgtggcactcctatcgaagatttgtgtttagatttt 83001

                                                                     
Query: 379   actcttccaggttttcctgattatgttctcaaagaaggcgagcaaaacacaattgt 434
             ||||||||||||| |||||||||| |||| |||||||||||| |||||||||||||
Sbjct: 83000 actcttccaggttatcctgattatattcttaaagaaggcgaggaaaacacaattgt 82945



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 148/184 (80%)
 Strand = Plus / Minus

                                                                         
Query: 11    tgatacaagctcctcttggnttatttcctcgcccttggccttctaatgttgatacctcag 70
             |||||||||||||  |||| || |||||||| ||||||||   ||  |||||| | ||||
Sbjct: 83464 tgatacaagctccctttggattgtttcctcggccttggccacttaccgttgatgcttcag 83405

                                                                         
Query: 71    agggtagcagattcctcaaagtcgtcgaatattttcgcttggtcggtcgagttgtggcga 130
             | || || |||||    || ||| ||||| |||| |||||||| || |||||  |||| |
Sbjct: 83404 aaggcagtagattttctaaggtcatcgaacatttccgcttggttgggcgagtgatggcaa 83345

                                                                         
Query: 131   aagtcttgcaggatggacggcttttagatttgcctttgtcaacagcattttataagctaa 190
             |||| ||||| |||||| | ||||||||||||||| | ||||||||| |||||||||| |
Sbjct: 83344 aagttttgcaagatggaagacttttagatttgcctctatcaacagcactttataagctta 83285

                 
Query: 191   tact 194
             ||||
Sbjct: 83284 tact 83281



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                        
Query: 536   aggtcttcgatatctcatccctccaaatattttcacctcaagagcttgactatctaata 594
             ||||||| || |||||||||||  |||||||||||||| ||||||||||||||||||||
Sbjct: 82653 aggtctttgacatctcatccctgaaaatattttcacctgaagagcttgactatctaata 82595



to top

>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1435_F07
          Length = 139041

 Score =  198 bits (100), Expect = 1e-47
 Identities = 202/236 (85%)
 Strand = Plus / Minus

                                                                         
Query: 199   caggagcttgatttattcgacattatctccttcgatgctgagcttggaaagacactgcaa 258
             |||||||| || ||||| ||||| ||||| || ||||||||  | ||||||||| |||||
Sbjct: 37598 caggagctggacttatttgacataatctcatttgatgctgaattcggaaagacattgcaa 37539

                                                                         
Query: 259   gaattgcaagttcttgttgagcgtaagaggttctttgagtccagctgtggcaaggatcag 318
             ||| ||||| |||||||||| || ||||||||| |||| ||||  | ||||| | |||||
Sbjct: 37538 gaactgcaaattcttgttgaacggaagaggttccttgaatccacttatggcatgaatcag 37479

                                                                         
Query: 319   ctaaaagttgcagacttgcgattccgtggagctcctatcgaggacttgtgtttagatttt 378
             ||| ||||  | |||||||| ||||||||  |||||||||| || |||||||||||||||
Sbjct: 37478 ctagaagtcacggacttgcgtttccgtggcactcctatcgaagatttgtgtttagatttt 37419

                                                                     
Query: 379   actcttccaggttttcctgattatgttctcaaagaaggcgagcaaaacacaattgt 434
             ||||||||||||| |||||||||| |||| |||||||||||| |||||||||||||
Sbjct: 37418 actcttccaggttatcctgattatattcttaaagaaggcgaggaaaacacaattgt 37363



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 148/184 (80%)
 Strand = Plus / Minus

                                                                         
Query: 11    tgatacaagctcctcttggnttatttcctcgcccttggccttctaatgttgatacctcag 70
             |||||||||||||  |||| || |||||||| ||||||||   ||  |||||| | ||||
Sbjct: 37882 tgatacaagctccctttggattgtttcctcggccttggccacttaccgttgatgcttcag 37823

                                                                         
Query: 71    agggtagcagattcctcaaagtcgtcgaatattttcgcttggtcggtcgagttgtggcga 130
             | || || |||||    || ||| ||||| |||| |||||||| || |||||  |||| |
Sbjct: 37822 aaggcagtagattttctaaggtcatcgaacatttccgcttggttgggcgagtgatggcaa 37763

                                                                         
Query: 131   aagtcttgcaggatggacggcttttagatttgcctttgtcaacagcattttataagctaa 190
             |||| ||||| |||||| | ||||||||||||||| | ||||||||| |||||||||| |
Sbjct: 37762 aagttttgcaagatggaagacttttagatttgcctctatcaacagcactttataagctta 37703

                 
Query: 191   tact 194
             ||||
Sbjct: 37702 tact 37699



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                        
Query: 536   aggtcttcgatatctcatccctccaaatattttcacctcaagagcttgactatctaata 594
             ||||||| || |||||||||||  |||||||||||||| ||||||||||||||||||||
Sbjct: 37071 aggtctttgacatctcatccctgaaaatattttcacctgaagagcttgactatctaata 37013



to top

>emb|AJ234834.1|HVU234834 Hordeum vulgare genomic DNA fragment; clone MWG2202.rev
          Length = 216

 Score =  180 bits (91), Expect = 3e-42
 Identities = 100/103 (97%)
 Strand = Plus / Plus

                                                                       
Query: 437 atattcacaacctagaggagtatgtttctttggtagtcgatgcgacactgaagtcaggga 496
           |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 25  atatccacaacctagaggagtatgtttctttggtagtcgatgcgacagtgaagtcaggga 84

                                                      
Query: 497 ttatgaagcaggttgaagctttcagatcaggttttagccaggt 539
           ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 85  ttatgaagcaggttgaagcattcagatcaggttttagccaggt 127



to top

>gb|AC121235.20| Medicago truncatula clone mth2-21k24, complete sequence
          Length = 116205

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                         
Query: 16    caagctcctcttggnttatttcctcgcccttggccttctaatgttgatacctcagagggt 75
             |||||||||||||| || |||||||| || |||||| | |||| |||| | |||||||||
Sbjct: 66359 caagctcctcttgggttgtttcctcgtccctggcctgcaaatgctgatgcgtcagagggt 66300

                
Query: 76    agc 78
             |||
Sbjct: 66299 agc 66297



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 139   caggatggacggcttttagatttgcctttgtcaacagcattttataagct 188
             ||||||||||| || ||||||||||| || ||   |||||||||||||||
Sbjct: 66236 caggatggacgtctattagatttgccattatctgtagcattttataagct 66187



to top

>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 92      tcgtcgaatattttcgcttgg 112
               |||||||||||||||||||||
Sbjct: 1238145 tcgtcgaatattttcgcttgg 1238165



to top

>gb|AC008055.7| Homo sapiens 12 BAC RP11-718L23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 196753

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 165    tttgtcaacagcattttataagcta 189
              |||||||| ||||||||||||||||
Sbjct: 186988 tttgtcaaaagcattttataagcta 186964



to top

>emb|BX936425.7| Zebrafish DNA sequence from clone CH211-39L24 in linkage group 17,
              complete sequence
          Length = 173763

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    aggacttgtgtttagatttt 378
              ||||||||||||||||||||
Sbjct: 139791 aggacttgtgtttagatttt 139772



to top

>gb|AC023951.19| Homo sapiens chromosome 15, clone RP11-815C16, complete sequence
          Length = 186341

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 561   aatattttcacctcaagagc 580
             ||||||||||||||||||||
Sbjct: 91180 aatattttcacctcaagagc 91161



to top

>emb|BX927287.17| Zebrafish DNA sequence from clone DKEY-31N13 in linkage group 5, complete
              sequence
          Length = 153905

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    tgtttagattttactcttcc 386
              ||||||||||||||||||||
Sbjct: 130956 tgtttagattttactcttcc 130937



to top

>gb|AC069045.11| Homo sapiens chromosome 15, clone RP11-111C2, complete sequence
          Length = 154859

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 561   aatattttcacctcaagagc 580
             ||||||||||||||||||||
Sbjct: 55351 aatattttcacctcaagagc 55370



to top

>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009
          Length = 1913118

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 500   tgaagcaggttgaagctttc 519
             ||||||||||||||||||||
Sbjct: 16443 tgaagcaggttgaagctttc 16424



to top

>gb|AC171212.3| Gallus gallus BAC clone CH261-72C23 from chromosome ul, complete sequence
          Length = 202705

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    cattttataagctaatactc 195
              ||||||||||||||||||||
Sbjct: 150282 cattttataagctaatactc 150301



to top

>gb|AC010739.3| Homo sapiens BAC clone RP11-478M12 from 2, complete sequence
          Length = 180226

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 523   tcaggttttagccaggtctt 542
             ||||||||||||||||||||
Sbjct: 37601 tcaggttttagccaggtctt 37582



to top

>gb|AC009268.10| Homo sapiens chromosome 15, clone RP11-74D7, complete sequence
          Length = 162840

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 561   aatattttcacctcaagagc 580
             ||||||||||||||||||||
Sbjct: 26059 aatattttcacctcaagagc 26040



to top

>gb|AF001550.1|HSAF001550 Homo sapiens chromosome 16 BAC clone CIT987SK-334D11, complete sequence
          Length = 173882

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   ttccaggttttcctgattat 402
             ||||||||||||||||||||
Sbjct: 81059 ttccaggttttcctgattat 81040



to top

>emb|CR759797.14| Zebrafish DNA sequence from clone DKEY-87K14 in linkage group 17,
             complete sequence
          Length = 181261

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 359   aggacttgtgtttagatttt 378
             ||||||||||||||||||||
Sbjct: 69772 aggacttgtgtttagatttt 69791



to top

>gb|AC171061.3| Gallus gallus BAC clone TAM32-9O12 from chromosome ul, complete
           sequence
          Length = 131280

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 cattttataagctaatactc 195
           ||||||||||||||||||||
Sbjct: 293 cattttataagctaatactc 312



to top

>gb|AC144543.4| Mus musculus BAC clone RP23-394E9 from 12, complete sequence
          Length = 219234

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   gagcttggaaagacactgca 257
             ||||||||||||||||||||
Sbjct: 25488 gagcttggaaagacactgca 25507



to top

>emb|AL845296.4| Mouse DNA sequence from clone RP23-121B24 on chromosome 2, complete
             sequence
          Length = 203414

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   gagcaaaacacaattgttaa 437
             ||||||||||||||||||||
Sbjct: 64573 gagcaaaacacaattgttaa 64554


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,097,770
Number of Sequences: 3902068
Number of extensions: 5097770
Number of successful extensions: 90023
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89903
Number of HSP's gapped (non-prelim): 118
length of query: 594
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 571
effective length of database: 17,143,297,704
effective search space: 9788822988984
effective search space used: 9788822988984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top