ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9g13 |
|---|---|
| Clone Library Name | barley_pub |
>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1183 Score = 31.2 bits (69), Expect = 1.9 Identities = 27/91 (29%), Positives = 34/91 (37%) Frame = +2 Query: 236 PNLPNGVAAGSPFKQPPFAMNNAVAASTVGVYKSRDMPKPKTAQLTIFYAGSVNVFNNVS 415 P L G A G PP AAS+VG P T + I +G+ Sbjct: 217 PQLYPGSAGGGVLSGPPMGPKGGAAASSVGPPSGGKQHPPPTTPIPISSSGA------SG 270 Query: 416 AEKAQELMFLASRGSLPAAPSTVTRSPDATF 508 A A+ G+LP+AP P ATF Sbjct: 271 APPAKPPNTPVGAGNLPSAP------PPATF 295
>MPA93_POAPR (P22286) Pollen allergen KBG 60 precursor (Pollen allergen Poa p 9)| (Poa p IX) Length = 307 Score = 30.8 bits (68), Expect = 2.5 Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 8/103 (7%) Frame = +2 Query: 248 NGVAAGSPFKQPPFAMNNAVAASTVGVYKSRDMPKPKTAQLTIFYAGSV--------NVF 403 N A F A N+A+ AST G Y+S A + YA +V VF Sbjct: 200 NAAPANDKFTVFEAAFNDAIKASTGGAYQSYKFIPALEAAVKQSYAATVATAPAVKYTVF 259 Query: 404 NNVSAEKAQELMFLASRGSLPAAPSTVTRSPDATFFTPAKLAA 532 + +KA M A + + PAA +T T + T A AA Sbjct: 260 -ETALKKAITAMSQAQKAAKPAAAATGTATAAVGAATGAATAA 301
>VMAT1_RAT (Q01818) Chromaffin granule amine transporter (Vesicular amine| transporter 1) (VAT1) (Solute carrier family 18 member 1) Length = 521 Score = 30.4 bits (67), Expect = 3.3 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = -3 Query: 363 AVFGFGMSLDLYTPTVEAATALFIAKGGCLNGLPAATPLG 244 +V G GM +YT E A+ IA GG GL P G Sbjct: 205 SVAGLGMLASVYTDNYERGRAMGIALGGLALGLLVGAPFG 244
>VMAT1_MOUSE (Q8R090) Chromaffin granule amine transporter (Vesicular amine| transporter 1) (VAT1) (Solute carrier family 18 member 1) Length = 521 Score = 30.4 bits (67), Expect = 3.3 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = -3 Query: 363 AVFGFGMSLDLYTPTVEAATALFIAKGGCLNGLPAATPLG 244 +V G GM +YT E A+ IA GG GL P G Sbjct: 205 SVAGLGMLASVYTDNYERGRAMGIALGGLALGLLVGAPFG 244
>MPA5A_PHLPR (Q40962) Pollen allergen Phl p 5a (Phl p Va) (Fragment)| Length = 286 Score = 30.0 bits (66), Expect = 4.3 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 7/102 (6%) Frame = +2 Query: 248 NGVAAGSPFKQPPFAMNNAVAASTVGVYKSRDMPKPKTAQLTIFYAGSVNVFNNV----- 412 N A F A N+ + AST G Y+S A + YA +V V Sbjct: 179 NAAPANDKFTVFEAAFNDEIKASTGGAYESYKFIPALEAAVKQAYAATVATAPEVKYTVF 238 Query: 413 --SAEKAQELMFLASRGSLPAAPSTVTRSPDATFFTPAKLAA 532 + +KA M A + + PAA +T T + T A AA Sbjct: 239 ETALKKAITAMSEAQKAAKPAAAATATATAAVGAATGAATAA 280
>HNRPF_HUMAN (P52597) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)| (Nucleolin-like protein mcs94-1) Length = 414 Score = 29.6 bits (65), Expect = 5.6 Identities = 20/70 (28%), Positives = 32/70 (45%) Frame = -2 Query: 319 GGSSDRIVHRERRLFERAPSSNAIGEVRRTLNPEHGIVGVERRGHWDHPSTIRSMLLLWR 140 G +RI HR +F+ + EVR +P + V+R G +D P T R + + + Sbjct: 169 GKHKERIGHRYIEVFKSSQE-----EVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVK 223 Query: 139 LPTVSRTRGG 110 + R R G Sbjct: 224 QAGLERMRPG 233
>POLG_HRV3 (Q82081) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D)] (Fragment) Length = 854 Score = 29.6 bits (65), Expect = 5.6 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 6/91 (6%) Frame = +2 Query: 260 AGSPFKQPPFAMNNAVAAST-VGVYKSRDMPKPKTAQLTIFYAGSVNV-----FNNVSAE 421 AG P + M+ + + + ++ +M TA + + Y SV + NNVS Sbjct: 230 AGGPTSDAIYNMDGTLLGNLLIFPHQFINMRTNNTATIVVPYINSVPIDSMTRHNNVSLM 289 Query: 422 KAQELMFLASRGSLPAAPSTVTRSPDATFFT 514 A GS P P TVT +P T FT Sbjct: 290 VVPIAPLNAPTGSSPTLPVTVTIAPMCTEFT 320
>MPA91_POAPR (P22284) Pollen allergen KBG 31 precursor (Pollen allergen Poa p 9)| (Poa p IX) Length = 373 Score = 29.6 bits (65), Expect = 5.6 Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 8/103 (7%) Frame = +2 Query: 248 NGVAAGSPFKQPPFAMNNAVAASTVGVYKSRDMPKPKTAQLTIFYAGSV--------NVF 403 N A F A N+A+ AST G Y+S A + YA +V VF Sbjct: 266 NAAPANDKFTVFEAAFNDAIKASTGGAYQSYKFIPALEAAVKQSYAATVATAPAVKYTVF 325 Query: 404 NNVSAEKAQELMFLASRGSLPAAPSTVTRSPDATFFTPAKLAA 532 + +KA M A + + PAA T T + T A AA Sbjct: 326 -ETALKKAITAMSQAQKAAKPAAAVTGTATSAVGAATGAATAA 367
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 29.6 bits (65), Expect = 5.6 Identities = 19/84 (22%), Positives = 34/84 (40%) Frame = +2 Query: 239 NLPNGVAAGSPFKQPPFAMNNAVAASTVGVYKSRDMPKPKTAQLTIFYAGSVNVFNNVSA 418 N P G ++G + ++ S +G MP P A + + +VN V A Sbjct: 864 NTPGGASSGISSASNLINQSTSINISNIGTNACSAMPAPSLASAVV--SCNVNASGTVPA 921 Query: 419 EKAQELMFLASRGSLPAAPSTVTR 490 + +S SLP +P+ + + Sbjct: 922 STSMPSGVSSSSSSLPMSPAALAQ 945
>MPA92_POAPR (P22285) Pollen allergen KBG 41 precursor (Pollen allergen Poa p 9)| (Poa p IX) Length = 333 Score = 29.3 bits (64), Expect = 7.3 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 8/88 (9%) Frame = +2 Query: 248 NGVAAGSPFKQPPFAMNNAVAASTVGVYKSRDMPKPKTAQLTIFYAGSV--------NVF 403 N A F A N+A+ AST G Y+S A + YA +V VF Sbjct: 207 NAAPANDKFTVFEAAFNDAIKASTGGAYQSYKFIPALEAAVKQSYAATVATAPAVKYTVF 266 Query: 404 NNVSAEKAQELMFLASRGSLPAAPSTVT 487 + +KA M A + + PAA T T Sbjct: 267 -ETALKKAITAMSQAQKAAKPAAAVTAT 293
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 28.9 bits (63), Expect = 9.5 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 298 QCGRCFHRWCVQIK 339 QCG+C+H +CV IK Sbjct: 979 QCGQCYHPYCVSIK 992
>VMAT2_MOUSE (Q8BRU6) Synaptic vesicular amine transporter (Monoamine| transporter) (Vesicular amine transporter 2) (VAT2) (Solute carrier family 18 member 2) Length = 517 Score = 28.9 bits (63), Expect = 9.5 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -3 Query: 363 AVFGFGMSLDLYTPTVEAATALFIAKGGCLNGLPAATPLG 244 +V G GM +YT E A+ IA GG G+ P G Sbjct: 203 SVAGMGMLASVYTDDEERGNAMGIALGGLAMGVLVGPPFG 242
>VMAT2_BOVIN (Q27963) Synaptic vesicular amine transporter (Monoamine| transporter) (Vesicular amine transporter 2) (VAT2) (Solute carrier family 18 member 2) Length = 517 Score = 28.9 bits (63), Expect = 9.5 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -3 Query: 363 AVFGFGMSLDLYTPTVEAATALFIAKGGCLNGLPAATPLG 244 +V G GM +YT E A+ IA GG G+ P G Sbjct: 203 SVAGMGMLASVYTDDEERGNAMGIALGGLAMGVLVGPPFG 242
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 28.9 bits (63), Expect = 9.5 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 298 QCGRCFHRWCVQIK 339 QCG+C+H +CV IK Sbjct: 972 QCGQCYHPYCVSIK 985 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,626,913 Number of Sequences: 219361 Number of extensions: 1169899 Number of successful extensions: 3785 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3534 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3783 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
