ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9g12 |
|---|---|
| Clone Library Name | barley_pub |
>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 591 Score = 286 bits (731), Expect = 4e-77 Identities = 141/163 (86%), Positives = 148/163 (90%) Frame = +1 Query: 1 GKXDQTRMWKVGERCARPGQXGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINES 180 G DQTRMWKVGER + GDLGPL+PFTAGVYVALMMAQIE+LRKKGHSYSEIINES Sbjct: 428 GNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINES 487 Query: 181 VIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQD 360 VIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD A IN+D Sbjct: 488 VIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAAINRD 547 Query: 361 LISNFMSDPVHGAIEVCAELRPTVDISVTADADFVRPELRQSA 489 LISNF SDPVHGAIEVCA+LRPTVDISV ADADFVRPELRQS+ Sbjct: 548 LISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSS 590
>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 581 Score = 283 bits (725), Expect = 2e-76 Identities = 140/161 (86%), Positives = 147/161 (91%) Frame = +1 Query: 1 GKXDQTRMWKVGERCARPGQXGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINES 180 GK DQTRMWKVGER GDLGPL+PFTAGV+VA+MMAQIEVLRKKGHSYSEIINES Sbjct: 418 GKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINES 477 Query: 181 VIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQD 360 VIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD APINQD Sbjct: 478 VIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQD 537 Query: 361 LISNFMSDPVHGAIEVCAELRPTVDISVTADADFVRPELRQ 483 LISNF+SDPVHGAI+VCAELRPT+DISV A ADFVRPELRQ Sbjct: 538 LISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQ 578
>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 595 Score = 281 bits (719), Expect = 1e-75 Identities = 138/162 (85%), Positives = 148/162 (91%) Frame = +1 Query: 1 GKXDQTRMWKVGERCARPGQXGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINES 180 GK DQTRMWKVGE+ GDLGPL+PFTAGVYVALMMAQIE+LRKKGHSYSEIINES Sbjct: 434 GKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINES 493 Query: 181 VIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQD 360 VIE+VDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYIL+QQA V VD APINQD Sbjct: 494 VIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQD 553 Query: 361 LISNFMSDPVHGAIEVCAELRPTVDISVTADADFVRPELRQS 486 LISNF+SDPVH AI VCA+LRP+VDISVTADADFVRPELRQ+ Sbjct: 554 LISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQA 595
>ILV5_NEUCR (P38674) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 402 Score = 67.8 bits (164), Expect = 2e-11 Identities = 32/62 (51%), Positives = 43/62 (69%) Frame = +1 Query: 112 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 291 + +AQ EVLR++GHS SE NE+V E+ SL P + A G+ +M D CSTTAR G+ W P Sbjct: 276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTP 335 Query: 292 RF 297 +F Sbjct: 336 KF 337
>ILV5_SCHPO (P78827) Probable ketol-acid reductoisomerase, mitochondrial| precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 404 Score = 62.4 bits (150), Expect = 9e-10 Identities = 30/62 (48%), Positives = 41/62 (66%) Frame = +1 Query: 112 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 291 L +AQ +VLR++GHS +E NE+V E+ SL P + G+ +M CSTTAR G+ W P Sbjct: 277 LFLAQYQVLRERGHSPAEAFNETVEEATQSLYPLIGKYGLDYMFAACSTTARRGAIDWTP 336 Query: 292 RF 297 RF Sbjct: 337 RF 338
>ILV5_YEAST (P06168) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 395 Score = 61.6 bits (148), Expect = 2e-09 Identities = 30/62 (48%), Positives = 40/62 (64%) Frame = +1 Query: 112 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 291 + +AQ +VLR+ GHS SE NE+V E+ SL P + G+ +M D CSTTAR G+ W P Sbjct: 270 MFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRGALDWYP 329 Query: 292 RF 297 F Sbjct: 330 IF 331
>SYS_COREF (Q8FLY5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 419 Score = 30.8 bits (68), Expect = 3.0 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = -1 Query: 447 RHRDVDGGPQLGADLDGAVDGVRHEVA---DEVLVDGRILVHRHKR-LLGQDVVE 295 R+RD +G PQ+ A L+G + R VA + DG ++V R +G+DV+E Sbjct: 362 RYRDENGKPQIAATLNGTLATTRWLVAILENNQQADGSVIVPEALRPFVGKDVLE 416
>POLG_BVDVS (Q01499) Genome polyprotein [Contains: N-terminal protease (EC| 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1 (gp33); Envelope glycoprotein E2 (gp55); p7; Nonstructural protein 2 Length = 3898 Score = 30.8 bits (68), Expect = 3.0 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Frame = +1 Query: 43 CARPGQXGDLGPLHPFTAGVYVALMMA----QIEVLRKKGHSYSEIINESVIESVDSLNP 210 CA P Q +G +H F+ + V M A + +K H E I V+E D + Sbjct: 1914 CATPEQLAIIGKIHRFSESIRVVAMTATPAGSVTTTGQK-HPIEEFIAPEVMEGEDLGSQ 1972 Query: 211 FMHARGVAFMVD 246 F+ G+ VD Sbjct: 1973 FLDIAGLKIPVD 1984
>ICAA_STAAW (Q8NUI7) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 295 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 402 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAU (Q9RQP9) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 295 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 402 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAS (Q6G608) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 295 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 402 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAR (Q6GDD8) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 295 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 402 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAN (Q7A351) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 295 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 402 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAM (Q99QX3) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 295 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 402 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAC (Q5HCN1) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 295 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 402 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ILVC_DEHE1 (Q3Z891) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 332 Score = 30.0 bits (66), Expect = 5.2 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 17/126 (13%) Frame = +1 Query: 97 GVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGS 276 G +L+ A E L + G+ E+ + + + M+ G+A+M D+ S TA+ G Sbjct: 201 GGTTSLVKAGFETLVEAGYQ-PEVAYFECLHELKLIVDLMYQGGIAYMRDSISDTAKYGD 259 Query: 277 RKWAPRFDYILTQQAFVTVDKDAPINQD-------LISNFMSDPVHGAI----------E 405 PR ++ ++ + T+ + QD ++ N PV+ ++ E Sbjct: 260 FTRGPR---VINEETYETMGEILGEIQDGSFAKEWILENQAGRPVYNSLRRMESEHLIEE 316 Query: 406 VCAELR 423 V AELR Sbjct: 317 VGAELR 322
>DPS1_HUMAN (Q5T2R2) Decaprenyl-diphosphate synthase subunit 1 (EC 2.5.1.-)| (Decaprenyl pyrophosphate synthetase subunit 1) (Trans-prenyltransferase) (TPT) Length = 415 Score = 29.6 bits (65), Expect = 6.7 Identities = 21/62 (33%), Positives = 30/62 (48%) Frame = +1 Query: 25 WKVGERCARPGQXGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSL 204 WK R PG G GPL P A A + AQ+ R+KG S+I ++++ + S Sbjct: 14 WKPAARSPGPGSPGRAGPLGPSAA----AEVRAQVH--RRKGLDLSQIPYINLVKHLTSA 67 Query: 205 NP 210 P Sbjct: 68 CP 69
>ILVC_DEHSC (Q3ZXI2) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 332 Score = 29.3 bits (64), Expect = 8.8 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 17/126 (13%) Frame = +1 Query: 97 GVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGS 276 G +L+ A E L + G+ E+ + + + M+ G+A+M D+ S TA+ G Sbjct: 201 GGTTSLVKAGFETLVEAGYQ-PEVAYFECLHELKLIVDLMYQGGIAYMRDSISDTAKYGD 259 Query: 277 RKWAPRFDYILTQQAFVTVDKDAPINQD-------LISNFMSDPVHGAI----------E 405 PR ++ + + T+ + QD ++ N PV+ ++ E Sbjct: 260 FTRGPR---VINEDTYETMGEILGEIQDGSFAKEWILENQAGRPVYNSLRRMESEHLIEE 316 Query: 406 VCAELR 423 V AELR Sbjct: 317 VGAELR 322
>POLG_BVDVN (P19711) Genome polyprotein [Contains: N-terminal protease (EC| 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1 (gp33); Envelope glycoprotein E2 (gp55); p7; Nonstructural protein 2 Length = 3988 Score = 29.3 bits (64), Expect = 8.8 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Frame = +1 Query: 43 CARPGQXGDLGPLHPFTAGVYVALMMA----QIEVLRKKGHSYSEIINESVIESVDSLNP 210 CA P Q +G +H F+ + V M A + +K H E I V++ D + Sbjct: 2004 CATPEQLAIIGKIHRFSESIRVVAMTATPAGSVTTTGQK-HPIEEFIAPEVMKGEDLGSQ 2062 Query: 211 FMHARGVAFMVD 246 F+ G+ VD Sbjct: 2063 FLDIAGLKIPVD 2074
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 29.3 bits (64), Expect = 8.8 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -1 Query: 525 HPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGP 421 HP+ + SDP L R P L H + G D GP Sbjct: 862 HPTGSRLSDPRLSRDPRLSRHAETSGGSGPGDSGP 896 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,457,003 Number of Sequences: 219361 Number of extensions: 1443876 Number of successful extensions: 4831 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4672 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4830 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
