ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransf... 944 0.0
2gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, p... 505 e-140
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 68 4e-08
5emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003... 68 4e-08
6emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb... 58 4e-05
7emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E... 58 4e-05
8gb|AY518220.1| Oryza sativa (indica cultivar-group) NBS-LRR-like... 44 0.53
9emb|AL162426.20| Human DNA sequence from clone RP11-56D16 on chr... 44 0.53
10ref|XM_474640.1| Oryza sativa (japonica cultivar-group), predic... 42 2.1
11emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4,... 42 2.1
12ref|NM_170325.1| Drosophila melanogaster CG31064-RA, transcript ... 42 2.1
13ref|NM_143288.2| Drosophila melanogaster CG31064-RE, transcript ... 42 2.1
14gb|AY051617.1| Drosophila melanogaster GH26613 full length cDNA 42 2.1
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16gb|AC009848.9|AC009848 Drosophila melanogaster, chromosome 3R, r... 42 2.1
17dbj|AK098998.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
18dbj|AK072016.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
19gb|AE003759.3| Drosophila melanogaster chromosome 3R, section 97... 42 2.1
20ref|NM_001031361.1| Gallus gallus gasdermin 1 (GSDM1), mRNA 40 8.2
21ref|XM_418085.1| PREDICTED: Gallus gallus similar to Myosin Id (... 40 8.2
22ref|XM_745088.1| Aspergillus fumigatus Af293 hypothetical protei... 40 8.2
23gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 8.2
24emb|AL646047.9| Mouse DNA sequence from clone RP23-69P8 on chrom... 40 8.2
25emb|AJ721093.1| Gallus gallus mRNA for hypothetical protein, clo... 40 8.2
26gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.2
27emb|BX323587.5| Zebrafish DNA sequence from clone CH211-100L3, c... 40 8.2
28emb|BX569781.7| Zebrafish DNA sequence from clone DKEY-72L18 in ... 40 8.2
29dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
30gb|AC005805.12| Homo sapiens 12 PAC RP3-473L9 (Roswell Park Canc... 40 8.2
31gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D... 40 8.2
32gb|AE004715.1| Pseudomonas aeruginosa PAO1, section 276 of 529 o... 40 8.2
33dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
34emb|AJ328716.1|HSA328716 Homo sapiens genomic sequence surroundi... 40 8.2
35emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in... 40 8.2
36gb|AY560116.1| Feline calicivirus isolate UTCVM-H1, complete genome 40 8.2
37gb|AC169084.3| Mus musculus BAC clone RP24-427O13 from chromosom... 40 8.2

>gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransferase (HvCOMT) gene,
            complete cds
          Length = 5238

 Score =  944 bits (476), Expect = 0.0
 Identities = 497/500 (99%), Gaps = 3/500 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    tctgttctagtagtccaggnatctattgaattgtgagaggtagccatggnacaagnattt 60
            ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 2646 tctgttctagtagtccagg-atctattgaattgtgagaggtagccatgg-acaag-attt 2702

                                                                        
Query: 61   cagcacctttctttagtggtacgagtcctgctgctgctagtgtcgccggagtggatgagg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2703 cagcacctttctttagtggtacgagtcctgctgctgctagtgtcgccggagtggatgagg 2762

                                                                        
Query: 121  acgataggctgtgcttccaagcgcaagagctcatgtttgcctacaacatctccatggtgc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2763 acgataggctgtgcttccaagcgcaagagctcatgtttgcctacaacatctccatggtgc 2822

                                                                        
Query: 181  tcagagcagccatccagctgggcctcctagacgcactcagtgcggctggtggcaaggcgc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2823 tcagagcagccatccagctgggcctcctagacgcactcagtgcggctggtggcaaggcgc 2882

                                                                        
Query: 241  tgacccccaacgagctcgtagagaacgtggagacaagcagcaacaaggccgaggcggcgg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2883 tgacccccaacgagctcgtagagaacgtggagacaagcagcaacaaggccgaggcggcgg 2942

                                                                        
Query: 301  ctgcggtggaccgtatcctcaggtacctctcctgcttcaacgtggtgacctgctcttcgg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2943 ctgcggtggaccgtatcctcaggtacctctcctgcttcaacgtggtgacctgctcttcgg 3002

                                                                        
Query: 361  aggcagcaggccctgacggcacacttgtgcggcgatacacgaccggccccttgtgccggt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3003 aggcagcaggccctgacggcacacttgtgcggcgatacacgaccggccccttgtgccggt 3062

                                                                        
Query: 421  ggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctttgtggtcgacc 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3063 ggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctttgtggtcgacc 3122

                                
Query: 481  ccgaccacttattcccctgg 500
            ||||||||||||||||||||
Sbjct: 3123 ccgaccacttattcccctgg 3142



 Score =  214 bits (108), Expect = 3e-52
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                        
Query: 499  ggcaccatatagcagaggcggtgactgcgggcgggccgtcggcgtttgagaggacgcaaa 558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3335 ggcaccatatagcagaggcggtgactgcgggcgggccgtcggcgtttgagaggacgcaaa 3394

                                                            
Query: 559  agtggccctactacgagtacatggggaagaaccagcggttgggaacac 606
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3395 agtggccctactacgagtacatggggaagaaccagcggttgggaacac 3442



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>gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, partial cds
          Length = 983

 Score =  505 bits (255), Expect = e-140
 Identities = 255/255 (100%)
 Strand = Plus / Plus

                                                                       
Query: 352 gctcttcggaggcagcaggccctgacggcacacttgtgcggcgatacacgaccggcccct 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gctcttcggaggcagcaggccctgacggcacacttgtgcggcgatacacgaccggcccct 60

                                                                       
Query: 412 tgtgccggtggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctttg 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgtgccggtggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctttg 120

                                                                       
Query: 472 tggtcgaccccgaccacttattcccctggcaccatatagcagaggcggtgactgcgggcg 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggtcgaccccgaccacttattcccctggcaccatatagcagaggcggtgactgcgggcg 180

                                                                       
Query: 532 ggccgtcggcgtttgagaggacgcaaaagtggccctactacgagtacatggggaagaacc 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggccgtcggcgtttgagaggacgcaaaagtggccctactacgagtacatggggaagaacc 240

                          
Query: 592 agcggttgggaacac 606
           |||||||||||||||
Sbjct: 241 agcggttgggaacac 255



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                           
Query: 141     gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 200
               ||||| |||||| |||| |||||||||  ||||||||||||  |||| || |||||||||
Sbjct: 5171173 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 5171232

                             
Query: 201     ggcctcctagacgc 214
               |||||||| |||||
Sbjct: 5171233 ggcctcctcgacgc 5171246



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                           
Query: 141     gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 200
               |||||||| ||||||||||||||||||  ||||||||| || ||||| ||  ||||||| 
Sbjct: 5363496 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 5363555

                                                            
Query: 201     ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 245
               || || || || || ||||| ||||| | ||| || |||||||||
Sbjct: 5363556 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 5363600



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                   
Query: 566     ctactacgagtacatggggaagaaccagcggttggg 601
               ||||| ||||||||||||||||||||||||| ||||
Sbjct: 5364107 ctacttcgagtacatggggaagaaccagcggctggg 5364142



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                           
Query: 141     gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 200
               ||||| |||||| |||| |||||||||  ||||||||||||  |||| || |||||||||
Sbjct: 5171155 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 5171214

                             
Query: 201     ggcctcctagacgc 214
               |||||||| |||||
Sbjct: 5171215 ggcctcctcgacgc 5171228



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                           
Query: 141     gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 200
               |||||||| ||||||||||||||||||  ||||||||| || ||||| ||  ||||||| 
Sbjct: 5363485 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 5363544

                                                            
Query: 201     ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 245
               || || || || || ||||| ||||| | ||| || |||||||||
Sbjct: 5363545 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 5363589



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                   
Query: 566     ctactacgagtacatggggaagaaccagcggttggg 601
               ||||| ||||||||||||||||||||||||| ||||
Sbjct: 5364096 ctacttcgagtacatggggaagaaccagcggctggg 5364131



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>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124959

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                         
Query: 141   gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 200
             ||||| |||||| |||| |||||||||  ||||||||||||  |||| || |||||||||
Sbjct: 92426 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 92367

                           
Query: 201   ggcctcctagacgc 214
             |||||||| |||||
Sbjct: 92366 ggcctcctcgacgc 92353



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>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 105645

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                         
Query: 141   gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 200
             |||||||| ||||||||||||||||||  ||||||||| || ||||| ||  ||||||| 
Sbjct: 35563 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 35622

                                                          
Query: 201   ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 245
             || || || || || ||||| ||||| | ||| || |||||||||
Sbjct: 35623 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 35667



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 566   ctactacgagtacatggggaagaaccagcggttggg 601
             ||||| ||||||||||||||||||||||||| ||||
Sbjct: 36174 ctacttcgagtacatggggaagaaccagcggctggg 36209



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>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar
              Nipponbare of ssp. japonica of Oryza sativa (rice),
              complete sequence
          Length = 141841

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                          
Query: 141    gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 200
              |||||||| ||||||||||||||||||  ||||||||| || ||||| ||  ||||||| 
Sbjct: 102312 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 102253

                                                           
Query: 201    ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 245
              || || || || || ||||| ||||| | ||| || |||||||||
Sbjct: 102252 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 102208



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 566    ctactacgagtacatggggaagaaccagcggttggg 601
              ||||| ||||||||||||||||||||||||| ||||
Sbjct: 101701 ctacttcgagtacatggggaagaaccagcggctggg 101666



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>gb|AY518220.1| Oryza sativa (indica cultivar-group) NBS-LRR-like protein A (NL-A),
            NBS-LRR-like protein B (NL-B), NBS-LRR-like protein C
            (NL-C), and NBS-LRR-like protein D (NL-D) genes, complete
            cds
          Length = 73617

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 288  gccgaggcggcggctgcggtgg 309
            ||||||||||||||||||||||
Sbjct: 2756 gccgaggcggcggctgcggtgg 2777



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>emb|AL162426.20| Human DNA sequence from clone RP11-56D16 on chromosome 9 Contains the
             STXBP1 gene for syntaxin binding protein 1
             (UNC18,hUNC18,MUNC18-1), two novel genes, a novel gene
             (LOC138428), the gene for a novel protien (LOC286207), the
             gene for anovel protein (FLJ32780), the TOR2A gene for
             torsin family 2, member A (FLJ14771), the 3' end of the
             SH2D3C gene for SH2 domain containing 3C (CHAT,NSP3) and
             five CpG islands, complete sequence
          Length = 163338

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 126   aggctgtgcttccaagcgcaagagct 151
             ||||||||||||||||| ||||||||
Sbjct: 60628 aggctgtgcttccaagcccaagagct 60653



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>ref|XM_474640.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1137

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 528 ggcgggccgtcggcgtttgagaggacgca 556
           ||||||||||||||||| |||||| ||||
Sbjct: 484 ggcgggccgtcggcgttcgagagggcgca 512



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>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19,
              complete sequence
          Length = 144144

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 528    ggcgggccgtcggcgtttgagaggacgca 556
              ||||||||||||||||| |||||| ||||
Sbjct: 103594 ggcgggccgtcggcgttcgagagggcgca 103622



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>ref|NM_170325.1| Drosophila melanogaster CG31064-RA, transcript variant A (CG31064),
            mRNA
          Length = 3084

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 288  gccgaggcggcggctgcggtg 308
            |||||||||||||||||||||
Sbjct: 2087 gccgaggcggcggctgcggtg 2107



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>ref|NM_143288.2| Drosophila melanogaster CG31064-RE, transcript variant E (CG31064),
            mRNA
          Length = 3628

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 288  gccgaggcggcggctgcggtg 308
            |||||||||||||||||||||
Sbjct: 2634 gccgaggcggcggctgcggtg 2654



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>gb|AY051617.1| Drosophila melanogaster GH26613 full length cDNA
          Length = 2963

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 288  gccgaggcggcggctgcggtg 308
            |||||||||||||||||||||
Sbjct: 1956 gccgaggcggcggctgcggtg 1976



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 528     ggcgggccgtcggcgtttgagaggacgca 556
               ||||||||||||||||| |||||| ||||
Sbjct: 5127321 ggcgggccgtcggcgttcgagagggcgca 5127349



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>gb|AC009848.9|AC009848 Drosophila melanogaster, chromosome 3R, region 97E-98A, BAC clone
             BACR02B05, complete sequence
          Length = 189694

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 288   gccgaggcggcggctgcggtg 308
             |||||||||||||||||||||
Sbjct: 45889 gccgaggcggcggctgcggtg 45869



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>dbj|AK098998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104D16, full
           insert sequence
          Length = 1308

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 528 ggcgggccgtcggcgtttgagaggacgca 556
           ||||||||||||||||| |||||| ||||
Sbjct: 510 ggcgggccgtcggcgttcgagagggcgca 538



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>dbj|AK072016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102F20, full
           insert sequence
          Length = 1365

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 528 ggcgggccgtcggcgtttgagaggacgca 556
           ||||||||||||||||| |||||| ||||
Sbjct: 497 ggcgggccgtcggcgttcgagagggcgca 525



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>gb|AE003759.3| Drosophila melanogaster chromosome 3R, section 97 of 118 of the complete
              sequence
          Length = 222554

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 288    gccgaggcggcggctgcggtg 308
              |||||||||||||||||||||
Sbjct: 215220 gccgaggcggcggctgcggtg 215200



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>ref|NM_001031361.1| Gallus gallus gasdermin 1 (GSDM1), mRNA
          Length = 1588

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 425 caccaaagacagaggggacggcaccctg 452
           |||||||||||||| ||| |||||||||
Sbjct: 448 caccaaagacagagtggatggcaccctg 475



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>ref|XM_418085.1| PREDICTED: Gallus gallus similar to Myosin Id (LOC419963), mRNA
          Length = 5646

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  gagcagccatccagctgggc 203
            ||||||||||||||||||||
Sbjct: 1631 gagcagccatccagctgggc 1612



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>ref|XM_745088.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g04330)
           partial mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 gtcgccggagtggatgagga 121
           ||||||||||||||||||||
Sbjct: 291 gtcgccggagtggatgagga 272



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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    gcaacaaggccgaggcggcg 299
              ||||||||||||||||||||
Sbjct: 498841 gcaacaaggccgaggcggcg 498860



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>emb|AL646047.9| Mouse DNA sequence from clone RP23-69P8 on chromosome 11 Contains the
             Myo1g gene for myosin 1G, a novel gene, a ribosomal
             protein L21 (Rpl21) pseudogene, the 5' end of a novel gene
             and two CpG islands, complete sequence
          Length = 93553

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 515   ggcggtgactgcgggcgggccgtcggcg 542
             ||||| |||||||||||||||| |||||
Sbjct: 51848 ggcggagactgcgggcgggccggcggcg 51875



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>emb|AJ721093.1| Gallus gallus mRNA for hypothetical protein, clone 34p8
          Length = 1588

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 425 caccaaagacagaggggacggcaccctg 452
           |||||||||||||| ||| |||||||||
Sbjct: 448 caccaaagacagagtggatggcaccctg 475



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 521     gactgcgggcgggccgtcgg 540
               ||||||||||||||||||||
Sbjct: 1530596 gactgcgggcgggccgtcgg 1530577



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>emb|BX323587.5| Zebrafish DNA sequence from clone CH211-100L3, complete sequence
          Length = 90800

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   catggtgctcagagcagcca 192
             ||||||||||||||||||||
Sbjct: 39007 catggtgctcagagcagcca 39026



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>emb|BX569781.7| Zebrafish DNA sequence from clone DKEY-72L18 in linkage group 17,
              complete sequence
          Length = 170138

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    catgtttgcctacaacatct 171
              ||||||||||||||||||||
Sbjct: 133275 catgtttgcctacaacatct 133294



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 291      gaggcggcggctgcggtgga 310
                ||||||||||||||||||||
Sbjct: 20905653 gaggcggcggctgcggtgga 20905634



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>gb|AC005805.12| Homo sapiens 12 PAC RP3-473L9 (Roswell Park Cancer Institute Human PAC
             Library) complete sequence
          Length = 113064

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   ctccatggtgctcagagcag 189
             ||||||||||||||||||||
Sbjct: 16033 ctccatggtgctcagagcag 16052



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>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete
             sequence
          Length = 92652

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   catgtttgcctacaacatct 171
             ||||||||||||||||||||
Sbjct: 83981 catgtttgcctacaacatct 84000



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>gb|AE004715.1| Pseudomonas aeruginosa PAO1, section 276 of 529 of the complete
            genome
          Length = 10189

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 288  gccgaggcggcggctgcggt 307
            ||||||||||||||||||||
Sbjct: 7650 gccgaggcggcggctgcggt 7669



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>dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0090E14
          Length = 161119

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   gaggcggcggctgcggtgga 310
             ||||||||||||||||||||
Sbjct: 32577 gaggcggcggctgcggtgga 32558



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>emb|AJ328716.1|HSA328716 Homo sapiens genomic sequence surrounding NotI site, clone NR1-NB5R
          Length = 680

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 287 ggccgaggcggcggctgcgg 306
           ||||||||||||||||||||
Sbjct: 51  ggccgaggcggcggctgcgg 32



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>emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in linkage group 23,
              complete sequence
          Length = 178148

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    ctcagagcagccatccagct 199
              ||||||||||||||||||||
Sbjct: 173873 ctcagagcagccatccagct 173854



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>gb|AY560116.1| Feline calicivirus isolate UTCVM-H1, complete genome
          Length = 7685

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  ggtgctcagagcagccatcc 195
            ||||||||||||||||||||
Sbjct: 2093 ggtgctcagagcagccatcc 2074



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>gb|AC169084.3| Mus musculus BAC clone RP24-427O13 from chromosome 9, complete sequence
          Length = 170491

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   ctccatggtgctcagagcag 189
             ||||||||||||||||||||
Sbjct: 67690 ctccatggtgctcagagcag 67709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,798,844
Number of Sequences: 3902068
Number of extensions: 4798844
Number of successful extensions: 77817
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77535
Number of HSP's gapped (non-prelim): 280
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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