Clone Name | bags9g09 |
---|---|
Clone Library Name | barley_pub |
>gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransferase (HvCOMT) gene, complete cds Length = 5238 Score = 944 bits (476), Expect = 0.0 Identities = 497/500 (99%), Gaps = 3/500 (0%) Strand = Plus / Plus Query: 1 tctgttctagtagtccaggnatctattgaattgtgagaggtagccatggnacaagnattt 60 ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct: 2646 tctgttctagtagtccagg-atctattgaattgtgagaggtagccatgg-acaag-attt 2702 Query: 61 cagcacctttctttagtggtacgagtcctgctgctgctagtgtcgccggagtggatgagg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2703 cagcacctttctttagtggtacgagtcctgctgctgctagtgtcgccggagtggatgagg 2762 Query: 121 acgataggctgtgcttccaagcgcaagagctcatgtttgcctacaacatctccatggtgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2763 acgataggctgtgcttccaagcgcaagagctcatgtttgcctacaacatctccatggtgc 2822 Query: 181 tcagagcagccatccagctgggcctcctagacgcactcagtgcggctggtggcaaggcgc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2823 tcagagcagccatccagctgggcctcctagacgcactcagtgcggctggtggcaaggcgc 2882 Query: 241 tgacccccaacgagctcgtagagaacgtggagacaagcagcaacaaggccgaggcggcgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2883 tgacccccaacgagctcgtagagaacgtggagacaagcagcaacaaggccgaggcggcgg 2942 Query: 301 ctgcggtggaccgtatcctcaggtacctctcctgcttcaacgtggtgacctgctcttcgg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2943 ctgcggtggaccgtatcctcaggtacctctcctgcttcaacgtggtgacctgctcttcgg 3002 Query: 361 aggcagcaggccctgacggcacacttgtgcggcgatacacgaccggccccttgtgccggt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3003 aggcagcaggccctgacggcacacttgtgcggcgatacacgaccggccccttgtgccggt 3062 Query: 421 ggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctttgtggtcgacc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3063 ggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctttgtggtcgacc 3122 Query: 481 ccgaccacttattcccctgg 500 |||||||||||||||||||| Sbjct: 3123 ccgaccacttattcccctgg 3142 Score = 214 bits (108), Expect = 3e-52 Identities = 108/108 (100%) Strand = Plus / Plus Query: 499 ggcaccatatagcagaggcggtgactgcgggcgggccgtcggcgtttgagaggacgcaaa 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3335 ggcaccatatagcagaggcggtgactgcgggcgggccgtcggcgtttgagaggacgcaaa 3394 Query: 559 agtggccctactacgagtacatggggaagaaccagcggttgggaacac 606 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3395 agtggccctactacgagtacatggggaagaaccagcggttgggaacac 3442
>gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, partial cds Length = 983 Score = 505 bits (255), Expect = e-140 Identities = 255/255 (100%) Strand = Plus / Plus Query: 352 gctcttcggaggcagcaggccctgacggcacacttgtgcggcgatacacgaccggcccct 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gctcttcggaggcagcaggccctgacggcacacttgtgcggcgatacacgaccggcccct 60 Query: 412 tgtgccggtggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctttg 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tgtgccggtggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctttg 120 Query: 472 tggtcgaccccgaccacttattcccctggcaccatatagcagaggcggtgactgcgggcg 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tggtcgaccccgaccacttattcccctggcaccatatagcagaggcggtgactgcgggcg 180 Query: 532 ggccgtcggcgtttgagaggacgcaaaagtggccctactacgagtacatggggaagaacc 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ggccgtcggcgtttgagaggacgcaaaagtggccctactacgagtacatggggaagaacc 240 Query: 592 agcggttgggaacac 606 ||||||||||||||| Sbjct: 241 agcggttgggaacac 255
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 141 gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 200 ||||| |||||| |||| ||||||||| |||||||||||| |||| || ||||||||| Sbjct: 5171173 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 5171232 Query: 201 ggcctcctagacgc 214 |||||||| ||||| Sbjct: 5171233 ggcctcctcgacgc 5171246 Score = 58.0 bits (29), Expect = 4e-05 Identities = 86/105 (81%) Strand = Plus / Plus Query: 141 gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 200 |||||||| |||||||||||||||||| ||||||||| || ||||| || ||||||| Sbjct: 5363496 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 5363555 Query: 201 ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 245 || || || || || ||||| ||||| | ||| || ||||||||| Sbjct: 5363556 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 5363600 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 566 ctactacgagtacatggggaagaaccagcggttggg 601 ||||| ||||||||||||||||||||||||| |||| Sbjct: 5364107 ctacttcgagtacatggggaagaaccagcggctggg 5364142
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 141 gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 200 ||||| |||||| |||| ||||||||| |||||||||||| |||| || ||||||||| Sbjct: 5171155 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 5171214 Query: 201 ggcctcctagacgc 214 |||||||| ||||| Sbjct: 5171215 ggcctcctcgacgc 5171228 Score = 58.0 bits (29), Expect = 4e-05 Identities = 86/105 (81%) Strand = Plus / Plus Query: 141 gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 200 |||||||| |||||||||||||||||| ||||||||| || ||||| || ||||||| Sbjct: 5363485 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 5363544 Query: 201 ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 245 || || || || || ||||| ||||| | ||| || ||||||||| Sbjct: 5363545 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 5363589 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 566 ctactacgagtacatggggaagaaccagcggttggg 601 ||||| ||||||||||||||||||||||||| |||| Sbjct: 5364096 ctacttcgagtacatggggaagaaccagcggctggg 5364131
>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124959 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 141 gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 200 ||||| |||||| |||| ||||||||| |||||||||||| |||| || ||||||||| Sbjct: 92426 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 92367 Query: 201 ggcctcctagacgc 214 |||||||| ||||| Sbjct: 92366 ggcctcctcgacgc 92353
>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 105645 Score = 58.0 bits (29), Expect = 4e-05 Identities = 86/105 (81%) Strand = Plus / Plus Query: 141 gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 200 |||||||| |||||||||||||||||| ||||||||| || ||||| || ||||||| Sbjct: 35563 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 35622 Query: 201 ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 245 || || || || || ||||| ||||| | ||| || ||||||||| Sbjct: 35623 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 35667 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 566 ctactacgagtacatggggaagaaccagcggttggg 601 ||||| ||||||||||||||||||||||||| |||| Sbjct: 36174 ctacttcgagtacatggggaagaaccagcggctggg 36209
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141841 Score = 58.0 bits (29), Expect = 4e-05 Identities = 86/105 (81%) Strand = Plus / Minus Query: 141 gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 200 |||||||| |||||||||||||||||| ||||||||| || ||||| || ||||||| Sbjct: 102312 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 102253 Query: 201 ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 245 || || || || || ||||| ||||| | ||| || ||||||||| Sbjct: 102252 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 102208 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 566 ctactacgagtacatggggaagaaccagcggttggg 601 ||||| ||||||||||||||||||||||||| |||| Sbjct: 101701 ctacttcgagtacatggggaagaaccagcggctggg 101666
>gb|AY518220.1| Oryza sativa (indica cultivar-group) NBS-LRR-like protein A (NL-A), NBS-LRR-like protein B (NL-B), NBS-LRR-like protein C (NL-C), and NBS-LRR-like protein D (NL-D) genes, complete cds Length = 73617 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 288 gccgaggcggcggctgcggtgg 309 |||||||||||||||||||||| Sbjct: 2756 gccgaggcggcggctgcggtgg 2777
>emb|AL162426.20| Human DNA sequence from clone RP11-56D16 on chromosome 9 Contains the STXBP1 gene for syntaxin binding protein 1 (UNC18,hUNC18,MUNC18-1), two novel genes, a novel gene (LOC138428), the gene for a novel protien (LOC286207), the gene for anovel protein (FLJ32780), the TOR2A gene for torsin family 2, member A (FLJ14771), the 3' end of the SH2D3C gene for SH2 domain containing 3C (CHAT,NSP3) and five CpG islands, complete sequence Length = 163338 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 126 aggctgtgcttccaagcgcaagagct 151 ||||||||||||||||| |||||||| Sbjct: 60628 aggctgtgcttccaagcccaagagct 60653
>ref|XM_474640.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1137 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 528 ggcgggccgtcggcgtttgagaggacgca 556 ||||||||||||||||| |||||| |||| Sbjct: 484 ggcgggccgtcggcgttcgagagggcgca 512
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence Length = 144144 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 528 ggcgggccgtcggcgtttgagaggacgca 556 ||||||||||||||||| |||||| |||| Sbjct: 103594 ggcgggccgtcggcgttcgagagggcgca 103622
>ref|NM_170325.1| Drosophila melanogaster CG31064-RA, transcript variant A (CG31064), mRNA Length = 3084 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 gccgaggcggcggctgcggtg 308 ||||||||||||||||||||| Sbjct: 2087 gccgaggcggcggctgcggtg 2107
>ref|NM_143288.2| Drosophila melanogaster CG31064-RE, transcript variant E (CG31064), mRNA Length = 3628 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 gccgaggcggcggctgcggtg 308 ||||||||||||||||||||| Sbjct: 2634 gccgaggcggcggctgcggtg 2654
>gb|AY051617.1| Drosophila melanogaster GH26613 full length cDNA Length = 2963 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 gccgaggcggcggctgcggtg 308 ||||||||||||||||||||| Sbjct: 1956 gccgaggcggcggctgcggtg 1976
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 528 ggcgggccgtcggcgtttgagaggacgca 556 ||||||||||||||||| |||||| |||| Sbjct: 5127321 ggcgggccgtcggcgttcgagagggcgca 5127349
>gb|AC009848.9|AC009848 Drosophila melanogaster, chromosome 3R, region 97E-98A, BAC clone BACR02B05, complete sequence Length = 189694 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 gccgaggcggcggctgcggtg 308 ||||||||||||||||||||| Sbjct: 45889 gccgaggcggcggctgcggtg 45869
>dbj|AK098998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104D16, full insert sequence Length = 1308 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 528 ggcgggccgtcggcgtttgagaggacgca 556 ||||||||||||||||| |||||| |||| Sbjct: 510 ggcgggccgtcggcgttcgagagggcgca 538
>dbj|AK072016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102F20, full insert sequence Length = 1365 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 528 ggcgggccgtcggcgtttgagaggacgca 556 ||||||||||||||||| |||||| |||| Sbjct: 497 ggcgggccgtcggcgttcgagagggcgca 525
>gb|AE003759.3| Drosophila melanogaster chromosome 3R, section 97 of 118 of the complete sequence Length = 222554 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 gccgaggcggcggctgcggtg 308 ||||||||||||||||||||| Sbjct: 215220 gccgaggcggcggctgcggtg 215200
>ref|NM_001031361.1| Gallus gallus gasdermin 1 (GSDM1), mRNA Length = 1588 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 425 caccaaagacagaggggacggcaccctg 452 |||||||||||||| ||| ||||||||| Sbjct: 448 caccaaagacagagtggatggcaccctg 475
>ref|XM_418085.1| PREDICTED: Gallus gallus similar to Myosin Id (LOC419963), mRNA Length = 5646 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gagcagccatccagctgggc 203 |||||||||||||||||||| Sbjct: 1631 gagcagccatccagctgggc 1612
>ref|XM_745088.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g04330) partial mRNA Length = 1119 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 gtcgccggagtggatgagga 121 |||||||||||||||||||| Sbjct: 291 gtcgccggagtggatgagga 272
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 gcaacaaggccgaggcggcg 299 |||||||||||||||||||| Sbjct: 498841 gcaacaaggccgaggcggcg 498860
>emb|AL646047.9| Mouse DNA sequence from clone RP23-69P8 on chromosome 11 Contains the Myo1g gene for myosin 1G, a novel gene, a ribosomal protein L21 (Rpl21) pseudogene, the 5' end of a novel gene and two CpG islands, complete sequence Length = 93553 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 515 ggcggtgactgcgggcgggccgtcggcg 542 ||||| |||||||||||||||| ||||| Sbjct: 51848 ggcggagactgcgggcgggccggcggcg 51875
>emb|AJ721093.1| Gallus gallus mRNA for hypothetical protein, clone 34p8 Length = 1588 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 425 caccaaagacagaggggacggcaccctg 452 |||||||||||||| ||| ||||||||| Sbjct: 448 caccaaagacagagtggatggcaccctg 475
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 gactgcgggcgggccgtcgg 540 |||||||||||||||||||| Sbjct: 1530596 gactgcgggcgggccgtcgg 1530577
>emb|BX323587.5| Zebrafish DNA sequence from clone CH211-100L3, complete sequence Length = 90800 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 catggtgctcagagcagcca 192 |||||||||||||||||||| Sbjct: 39007 catggtgctcagagcagcca 39026
>emb|BX569781.7| Zebrafish DNA sequence from clone DKEY-72L18 in linkage group 17, complete sequence Length = 170138 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 catgtttgcctacaacatct 171 |||||||||||||||||||| Sbjct: 133275 catgtttgcctacaacatct 133294
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 gaggcggcggctgcggtgga 310 |||||||||||||||||||| Sbjct: 20905653 gaggcggcggctgcggtgga 20905634
>gb|AC005805.12| Homo sapiens 12 PAC RP3-473L9 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 113064 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ctccatggtgctcagagcag 189 |||||||||||||||||||| Sbjct: 16033 ctccatggtgctcagagcag 16052
>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete sequence Length = 92652 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 catgtttgcctacaacatct 171 |||||||||||||||||||| Sbjct: 83981 catgtttgcctacaacatct 84000
>gb|AE004715.1| Pseudomonas aeruginosa PAO1, section 276 of 529 of the complete genome Length = 10189 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gccgaggcggcggctgcggt 307 |||||||||||||||||||| Sbjct: 7650 gccgaggcggcggctgcggt 7669
>dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0090E14 Length = 161119 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 gaggcggcggctgcggtgga 310 |||||||||||||||||||| Sbjct: 32577 gaggcggcggctgcggtgga 32558
>emb|AJ328716.1|HSA328716 Homo sapiens genomic sequence surrounding NotI site, clone NR1-NB5R Length = 680 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ggccgaggcggcggctgcgg 306 |||||||||||||||||||| Sbjct: 51 ggccgaggcggcggctgcgg 32
>emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in linkage group 23, complete sequence Length = 178148 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ctcagagcagccatccagct 199 |||||||||||||||||||| Sbjct: 173873 ctcagagcagccatccagct 173854
>gb|AY560116.1| Feline calicivirus isolate UTCVM-H1, complete genome Length = 7685 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ggtgctcagagcagccatcc 195 |||||||||||||||||||| Sbjct: 2093 ggtgctcagagcagccatcc 2074
>gb|AC169084.3| Mus musculus BAC clone RP24-427O13 from chromosome 9, complete sequence Length = 170491 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ctccatggtgctcagagcag 189 |||||||||||||||||||| Sbjct: 67690 ctccatggtgctcagagcag 67709 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,798,844 Number of Sequences: 3902068 Number of extensions: 4798844 Number of successful extensions: 77817 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77535 Number of HSP's gapped (non-prelim): 280 length of query: 606 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 583 effective length of database: 17,143,297,704 effective search space: 9994542561432 effective search space used: 9994542561432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)