ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9g04 |
|---|---|
| Clone Library Name | barley_pub |
>GDIA_PANTR (P60028) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 183 bits (465), Expect = 2e-46 Identities = 88/149 (59%), Positives = 113/149 (75%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F ++V ++++ DPKT +G+D + R++ K L D IDF GHALAL+R D YL + Sbjct: 141 RKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P L+TV R+KLYSESLAR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP + Sbjct: 201 PCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDII 259 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 + GKV GV SEGE A+CK+++CDPSY+ Sbjct: 260 ME-NGKVVGVKSEGEVARCKQLICDPSYI 287
>GDIA_MOUSE (P50396) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 183 bits (465), Expect = 2e-46 Identities = 87/149 (58%), Positives = 113/149 (75%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F ++V ++++ DPKT +G+D + R++ K L D IDF GHALAL+R D YL + Sbjct: 141 RKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P L+T+ R+KLYSESLAR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP + Sbjct: 201 PCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDII 259 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 + GKV GV SEGE A+CK+++CDPSY+ Sbjct: 260 ME-NGKVVGVKSEGEVARCKQLICDPSYI 287
>GDIA_HUMAN (P31150) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) (XAP-4) (Oligophrenin-2) Length = 447 Score = 183 bits (465), Expect = 2e-46 Identities = 88/149 (59%), Positives = 113/149 (75%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F ++V ++++ DPKT +G+D + R++ K L D IDF GHALAL+R D YL + Sbjct: 141 RKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P L+TV R+KLYSESLAR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP + Sbjct: 201 PCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDII 259 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 + GKV GV SEGE A+CK+++CDPSY+ Sbjct: 260 ME-NGKVVGVKSEGEVARCKQLICDPSYI 287
>GDIB_PONPY (Q5RCE1) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 183 bits (465), Expect = 2e-46 Identities = 87/149 (58%), Positives = 113/149 (75%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F +YV ++++ DP+T +G+D + T R++ K L D IDF GHALAL+R D YL + Sbjct: 141 RKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P +T+ R+KLYSESLAR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP ++ Sbjct: 201 PCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI- 258 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 GKV GV SEGE A+CK+++CDPSY+ Sbjct: 259 IVQNGKVIGVKSEGEIARCKQLICDPSYV 287
>GDIB_HUMAN (P50395) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 183 bits (465), Expect = 2e-46 Identities = 87/149 (58%), Positives = 113/149 (75%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F +YV ++++ DP+T +G+D + T R++ K L D IDF GHALAL+R D YL + Sbjct: 141 RKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P +T+ R+KLYSESLAR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP ++ Sbjct: 201 PCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI- 258 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 GKV GV SEGE A+CK+++CDPSY+ Sbjct: 259 IVQNGKVIGVKSEGEIARCKQLICDPSYV 287
>GDIA_RAT (P50398) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 183 bits (464), Expect = 2e-46 Identities = 87/149 (58%), Positives = 113/149 (75%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F ++V ++++ DPKT +G+D + R++ K L D IDF GHALAL+R D YL + Sbjct: 141 RKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P L+T+ R+KLYSESLAR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP + Sbjct: 201 PCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDII 259 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 + GKV GV SEGE A+CK+++CDPSY+ Sbjct: 260 ME-NGKVVGVKSEGEVARCKQLICDPSYI 287
>GDIA_PONPY (Q7YQM0) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 183 bits (464), Expect = 2e-46 Identities = 87/149 (58%), Positives = 113/149 (75%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F ++V ++++ DPKT +G+D + R++ K L D IDF GHALAL+R D YL + Sbjct: 141 RKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P L+T+ R+KLYSESLAR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP + Sbjct: 201 PCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDII 259 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 + GKV GV SEGE A+CK+++CDPSY+ Sbjct: 260 ME-NGKVVGVKSEGEVARCKQLICDPSYI 287
>GDIA_MACFA (Q8HXX7) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 183 bits (464), Expect = 2e-46 Identities = 87/149 (58%), Positives = 113/149 (75%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F ++V ++++ DPKT +G+D + R++ K L D IDF GHALAL+R D YL + Sbjct: 141 RKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P L+T+ R+KLYSESLAR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP + Sbjct: 201 PCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDII 259 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 + GKV GV SEGE A+CK+++CDPSY+ Sbjct: 260 ME-NGKVVGVKSEGEVARCKQLICDPSYI 287
>GDIA_CANFA (O97555) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 183 bits (464), Expect = 2e-46 Identities = 87/149 (58%), Positives = 113/149 (75%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F ++V ++++ DPKT +G+D + R++ K L D IDF GHALAL+R D YL + Sbjct: 141 RKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P L+T+ R+KLYSESLAR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP + Sbjct: 201 PCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDII 259 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 + GKV GV SEGE A+CK+++CDPSY+ Sbjct: 260 ME-NGKVVGVKSEGEVARCKQLICDPSYI 287
>GDIA_BOVIN (P21856) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A GDI) Length = 447 Score = 183 bits (464), Expect = 2e-46 Identities = 87/149 (58%), Positives = 113/149 (75%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F ++V ++++ DPKT +G+D + R++ K L D IDF GHALAL+R D YL + Sbjct: 141 RKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P L+T+ R+KLYSESLAR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP + Sbjct: 201 PCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDII 259 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 + GKV GV SEGE A+CK+++CDPSY+ Sbjct: 260 ME-NGKVVGVKSEGEVARCKQLICDPSYV 287
>GDIB_BOVIN (P50397) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 182 bits (463), Expect = 3e-46 Identities = 87/149 (58%), Positives = 113/149 (75%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F +YV ++++ DP+T +G+D + + RE+ K L D IDF GHALAL+R D YL + Sbjct: 141 RKFLVYVANFDENDPRTFEGIDPKKTSMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P +T+ R+KLYSESLAR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP ++ Sbjct: 201 PCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI- 258 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 GKV GV SEGE A+CK+++CDPSY+ Sbjct: 259 IMQNGKVIGVKSEGEIARCKQLICDPSYV 287
>GDIB_PIG (Q6Q7J2) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 182 bits (461), Expect = 4e-46 Identities = 87/149 (58%), Positives = 112/149 (75%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F +YV ++++ DP+T +G+D + RE+ K L D IDF GHALAL+R D YL + Sbjct: 141 RKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P +T+ R+KLYSESLAR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP ++ Sbjct: 201 PCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI- 258 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 GKV GV SEGE A+CK+++CDPSY+ Sbjct: 259 IVQNGKVIGVKSEGEIARCKQLICDPSYV 287
>GDIB_MOUSE (Q61598) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3) Length = 445 Score = 180 bits (457), Expect = 1e-45 Identities = 85/149 (57%), Positives = 113/149 (75%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F +YV ++++ DP+T +G+D + + R++ K L D IDF GH+LAL+R D YL + Sbjct: 141 RKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P +T+ R+KLYSESLAR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP ++ Sbjct: 201 PCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI- 258 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 GKV GV SEGE A+CK+++CDPSY+ Sbjct: 259 IVQNGKVVGVKSEGEIARCKQLICDPSYV 287
>GDIB_CANFA (O97556) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 180 bits (457), Expect = 1e-45 Identities = 86/149 (57%), Positives = 111/149 (74%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F +YV ++++ DP+T +G+D + E+ K L D IDF GHALAL+R D YL + Sbjct: 141 RKFLVYVANFDEKDPRTFEGIDPKKTAIGEVYKKFDLGQDVIDFTGHALALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P +T+ R+KLYSESLAR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP ++ Sbjct: 201 PCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI- 258 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 GKV GV SEGE A+CK+++CDPSY+ Sbjct: 259 IVQNGKVIGVKSEGEVARCKQLICDPSYV 287
>GDIB_RAT (P50399) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3) Length = 445 Score = 166 bits (420), Expect = 3e-41 Identities = 79/149 (53%), Positives = 107/149 (71%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 R F +YV ++++ DP+T +G+D + + R++ K L D IDF GH+LAL+R D YL + Sbjct: 141 RKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLALYRTDDYLDQ 200 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 P + + + YSESLAR+ G SPY+YPLYG ELPQ FARLSA+YGGTYMLNKP ++ Sbjct: 201 PCCERLTELNFYSESLARY-GKSPYLYPLYGPWELPQGFARLSAIYGGTYMLNKPIEEI- 258 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSYL 448 GKV GV SEGE A+CK+++CDPSY+ Sbjct: 259 IVQNGKVVGVKSEGEIARCKQLICDPSYV 287
>GDI1_SCHPO (Q10305) Probable secretory pathway GDP dissociation inhibitor 1| Length = 440 Score = 154 bits (390), Expect = 8e-38 Identities = 74/148 (50%), Positives = 104/148 (70%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 + F +V +Y + DP T++ +++ R + + K GL T DFIGHA+AL+ DD YL + Sbjct: 140 KKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSGTQDFIGHAMALYLDDAYLKK 199 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 PA +T +R+ LY+ S+A+F G SPYIYPLYGLGELPQ FARLSA+YGGTYMLN+P ++ Sbjct: 200 PARETRERILLYASSIAKF-GKSPYIYPLYGLGELPQGFARLSAIYGGTYMLNQPVDEIV 258 Query: 362 FDMEGKVCGVTSEGETAKCKKVVCDPSY 445 + +G GV S + AK K+++ DPSY Sbjct: 259 YGDDGVAIGVRSGDQVAKAKQIIGDPSY 286
>GDI1_YEAST (P39958) Rab GDP-dissociation inhibitor (Rab GDI) (Secretory| pathway GDP dissociation inhibitor) Length = 451 Score = 141 bits (356), Expect = 7e-34 Identities = 73/149 (48%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Frame = +2 Query: 2 RNFFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSE 181 + F ++ Y + D THQGLDL + T E+ K GL + T +FIGHA+AL +D YL + Sbjct: 149 KKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ 208 Query: 182 PALDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 PA + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ FARLSA+YGGTYML+ P +V Sbjct: 209 PARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVL 267 Query: 362 FDME-GKVCGVTSEGETAKCKKVVCDPSY 445 + + GK GV ++ T K V+ DP+Y Sbjct: 268 YKKDTGKFEGVKTKLGTFKAPLVIADPTY 296
>RABEP_DROME (Q9V8W3) Rab proteins geranylgeranyltransferase component A (Rab| escort protein homolog) (REP) Length = 511 Score = 68.2 bits (165), Expect = 9e-12 Identities = 43/146 (29%), Positives = 68/146 (46%) Frame = +2 Query: 8 FFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSEPA 187 F DY + D L+ T E + +++ + A+A+ E Sbjct: 173 FLTACNDYGE-DKCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEEG- 230 Query: 188 LDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFD 367 ++R + + SL R+ G +P+++P+YG GELPQ F RL AVYGG Y L + + D Sbjct: 231 ---MQRTQRFLGSLGRY-GNTPFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALD 286 Query: 368 MEGKVCGVTSEGETAKCKKVVCDPSY 445 ++S G+T + K VV P Y Sbjct: 287 SNSNEFLLSSAGKTLRAKNVVSAPGY 312
>RAE1_MOUSE (Q9QXG2) Rab proteins geranylgeranyltransferase component A 1 (Rab| escort protein 1) (REP-1) (Choroideraemia protein homolog) Length = 665 Score = 65.9 bits (159), Expect = 5e-11 Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 2/150 (1%) Frame = +2 Query: 8 FFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSEPA 187 F + +Y D P ++ + T T E + L+ + F+ H++A+ + + Sbjct: 310 FLTFCVEYED-HPDEYKAYEET--TFSEYLKTQKLTPNLQYFVLHSIAMTSET---TSST 363 Query: 188 LDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFD 367 +D +K K + + L R+ G +P+++PLYG GELPQ F R+ AV+GG Y L + D Sbjct: 364 VDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVD 422 Query: 368 MEGKVCG--VTSEGETAKCKKVVCDPSYLA 451 E + C V G+ K V + SYL+ Sbjct: 423 KESRKCKAIVDQFGQRIISKHFVIEDSYLS 452
>RAE2_MOUSE (Q9QZD5) Rab proteins geranylgeranyltransferase component A 2 (Rab| escort protein 2) (REP-2) (Choroideraemia-like protein) Length = 621 Score = 64.3 bits (155), Expect = 1e-10 Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 2/140 (1%) Frame = +2 Query: 35 DADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSEPALDTVKRMKL 214 D + + + D + + + + L+ + FI H++A+ + S LD ++ K Sbjct: 305 DYEQHSDEYQDFKQCSFSDYLKTKKLTPNLQHFILHSIAMTSES---SCTTLDGLQATKN 361 Query: 215 YSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML-NKPECKVEFDMEGKVCGV 391 + + L RF G +P+I+PLYG GE+PQ F R+ AV+GG Y L +K +C V G+ G+ Sbjct: 362 FLQCLGRF-GNTPFIFPLYGHGEIPQCFCRMCAVFGGVYCLRHKVQCLVVDKDSGRCKGI 420 Query: 392 TSE-GETAKCKKVVCDPSYL 448 G+ + + SYL Sbjct: 421 IDAFGQRISANYFIVEDSYL 440
>RAE1_RAT (P37727) Rab proteins geranylgeranyltransferase component A 1 (Rab| escort protein 1) (REP-1) (Choroideraemia protein homolog) Length = 650 Score = 62.8 bits (151), Expect = 4e-10 Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 2/126 (1%) Frame = +2 Query: 80 TTRELIAKHGLSDDTIDFIGHALALHRDDRYLSEPALDTVKRMKLYSESLARFQGGSPYI 259 T E + L+ + F+ H++A+ + + +D +K K + + L R+ G +P++ Sbjct: 316 TFSEYLKTQKLTPNLQYFVLHSIAMTSET---TSCTVDGLKATKKFLQCLGRY-GNTPFL 371 Query: 260 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDMEGKVCGVTSE--GETAKCKKVVC 433 +PLYG GELPQ F R+ AV+GG Y L + D E + C + G+ K + Sbjct: 372 FPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFII 431 Query: 434 DPSYLA 451 + SYL+ Sbjct: 432 EDSYLS 437
>RAE2_HUMAN (P26374) Rab proteins geranylgeranyltransferase component A 2 (Rab| escort protein 2) (REP-2) (Choroideraemia-like protein) Length = 656 Score = 62.0 bits (149), Expect = 7e-10 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 2/123 (1%) Frame = +2 Query: 89 ELIAKHGLSDDTIDFIGHALALHRDDRYLSEPALDTVKRMKLYSESLARFQGGSPYIYPL 268 E + L+ + F+ H++A+ + S +D + K + + L RF G +P+++PL Sbjct: 324 EYLKTKKLTPNLQHFVLHSIAMTSES---SCTTIDGLNATKNFLQCLGRF-GNTPFLFPL 379 Query: 269 YGLGELPQAFARLSAVYGGTYML-NKPECKVEFDMEGKVCGVTSE-GETAKCKKVVCDPS 442 YG GE+PQ F R+ AV+GG Y L +K +C V G+ + G+ K + + S Sbjct: 380 YGQGEIPQGFCRMCAVFGGIYCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDS 439 Query: 443 YLA 451 YL+ Sbjct: 440 YLS 442
>RAE1_HUMAN (P24386) Rab proteins geranylgeranyltransferase component A 1 (Rab| escort protein 1) (REP-1) (Choroideraemia protein) (TCD protein) Length = 653 Score = 58.9 bits (141), Expect = 6e-09 Identities = 36/126 (28%), Positives = 64/126 (50%) Frame = +2 Query: 8 FFIYVQDYNDADPKTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSEPA 187 F + +Y + P ++G + +T E + L+ + + H++A+ + + Sbjct: 298 FLTFCMEY-EKYPDEYKGYE--EITFYEYLKTQKLTPNLQYIVMHSIAMTSET---ASST 351 Query: 188 LDTVKRMKLYSESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFD 367 +D +K K + L R+ G +P+++PLYG GELPQ F R+ AV+GG Y L + D Sbjct: 352 IDGLKATKNFLHCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVD 410 Query: 368 MEGKVC 385 E + C Sbjct: 411 KESRKC 416
>RAEP_YEAST (P32864) Rab proteins geranylgeranyltransferase component A (Rab| escort protein) (REP) Length = 603 Score = 35.4 bits (80), Expect = 0.067 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Frame = +2 Query: 191 DTVKRMKLYSESLARFQGGSPYIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFD 367 + ++R++ Y S + G P + YG GEL Q F R +AV G TY LN E V F+ Sbjct: 256 EALQRIRRYLTSFDVY-GPFPALCSKYGGPGELSQGFCRSAAVGGATYKLN--EKLVSFN 312 Query: 368 MEGKVCGVTSEGETAKCKKVVCDPS 442 KV + +KV+ P+ Sbjct: 313 PTTKVATFQDGSKVEVSEKVIISPT 337
>GIDA_BACSU (P25812) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 628 Score = 29.3 bits (64), Expect = 4.8 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 3/101 (2%) Frame = +2 Query: 68 LTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLS---EPALDTVKRMKLYSESLARF 238 LT L+ +H +D + IGH + L D+RY + + A ++ +L+S + Sbjct: 429 LTSRAEYRLLLRHDNADLRLTEIGHRIGLISDERYAAFEKKKAAIEAEKKRLHSVIIKPS 488 Query: 239 QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVE 361 YI L G + L GT ++ +PE E Sbjct: 489 PENQEYIRSLGG--------SELKDGVRGTDLMKRPEMNYE 521
>CP3A6_RABIT (P11707) Cytochrome P450 3A6 (EC 1.14.14.1) (CYPIIIA6) (P450-3C)| Length = 501 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = +2 Query: 14 IYVQDYNDADPKTHQGLDLTRMTTRELI---AKHGLSDDTIDFIGHALALHRDDRYLSEP 184 + + N + +H+ LD + + +I A + + T+ FI H LA H D + + Sbjct: 272 LMINSQNSKEIDSHKALDDIEVVAQSIIILFAGYETTSSTLSFIMHLLATHPDVQQKLQE 331 Query: 185 ALDTV 199 +DT+ Sbjct: 332 EIDTL 336
>CHIX_STROI (Q05638) Exochitinase 1 precursor (EC 3.2.1.14)| Length = 597 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +2 Query: 89 ELIAKHGLSDDTIDFIGHALALHRDDRYLSEP 184 ++I ++GL IDF GH+L+L+ DD P Sbjct: 369 KIIDEYGLDGLDIDFEGHSLSLNADDTDFKNP 400
>SYE_SULAC (Q4J8P2) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 567 Score = 28.9 bits (63), Expect = 6.3 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 10/126 (7%) Frame = +2 Query: 59 GLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSEPALDTVKRMKLYSESLARF 238 G+D R+ T + + G+ DTI I + L D +S L + R KL + Sbjct: 354 GIDDPRLPTLAGLRRRGILSDTIKEIIITVGLKETDATISFDNLASTNRKKLDKIAKRLM 413 Query: 239 QGGSPYIY----PLYGLGEL------PQAFARLSAVYGGTYMLNKPECKVEFDMEGKVCG 388 GSP + P L ++ P + +S G ++N+ + K + ++C Sbjct: 414 FVGSPKEFIIDIPQPILAKIPYHPSNPNEYREISVNPGDIILINENDAKDKVLRLMELCN 473 Query: 389 VTSEGE 406 VT G+ Sbjct: 474 VTVNGD 479
>Y1113_VIBVY (Q7MMF9) UPF0207 protein VV1113| Length = 194 Score = 28.5 bits (62), Expect = 8.2 Identities = 31/134 (23%), Positives = 54/134 (40%) Frame = +2 Query: 47 KTHQGLDLTRMTTRELIAKHGLSDDTIDFIGHALALHRDDRYLSEPALDTVKRMKLYSES 226 K Q L R + E +++H L + F+ HALAL ++ ++ + V + +Y +S Sbjct: 14 KLIQRWPLMRSVSSENVSEHSLQ---VAFVAHALALIKNKKFGGHINAERVAVLAMYHDS 70 Query: 227 LARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDMEGKVCGVTSEGE 406 G P Y E+ + + ++ A + PE E + TSE E Sbjct: 71 SEVLTGDLPTPVKYYN-PEIAKEYKKIEAAAEQKLLSMLPEEFQEDFRPFVISQQTSEEE 129 Query: 407 TAKCKKVVCDPSYL 448 K+ +YL Sbjct: 130 AQIVKQADSICAYL 143 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,533,397 Number of Sequences: 219361 Number of extensions: 1267544 Number of successful extensions: 3297 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3199 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3265 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
