ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9f21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 0.16
2gb|AF322013.1|AF322012S2 Bradyrhizobium japonicum symbiotic gene... 38 0.62
3dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 38 0.62
4ref|XM_512255.1| PREDICTED: Pan troglodytes similar to Anti-Mull... 36 2.4
5gb|BT016202.1| Zea mays clone Contig35 mRNA sequence 36 2.4
6gb|BC049194.1| Homo sapiens anti-Mullerian hormone, mRNA (cDNA c... 36 2.4
7gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipie... 36 2.4
8emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 36 2.4
9emb|BX640425.1| Bordetella parapertussis strain 12822, complete ... 36 2.4
10emb|BX640420.1| Bordetella pertussis strain Tohama I, complete g... 36 2.4
11gb|AC016251.9| Homo sapiens chromosome 15, clone RP11-759A24, co... 36 2.4
12ref|NM_000479.2| Homo sapiens anti-Mullerian hormone (AMH), mRNA 36 2.4
13gb|AC138127.1| Homo sapiens chromosome 19 clone LLNLR-281G7, com... 36 2.4
14dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 36 2.4
15gb|AC005263.1|AC005263 Homo sapiens chromosome 19, cosmid F20489... 36 2.4
16gb|K03474.1|HUMMIS Human Mullerian inhibiting substance gene, co... 36 2.4
17ref|NM_053457.2| Rattus norvegicus claudin 11 (Cldn11), mRNA 34 9.6
18gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 34 9.6
19ref|XM_533286.2| PREDICTED: Canis familiaris similar to Microsom... 34 9.6
20gb|AY597283.1| Pseudomonas viridiflava strain RMX3.1b pathogenic... 34 9.6
21dbj|AB223411.1| Aspergillus oryzae cDNA, contig sequence: AoEST0243 34 9.6
22dbj|AB223273.1| Aspergillus oryzae cDNA, contig sequence: AoEST0104 34 9.6
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 34 9.6
24gb|BC070927.1| Rattus norvegicus claudin 11, mRNA (cDNA clone MG... 34 9.6
25dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic D... 34 9.6
26dbj|AK111128.1| Oryza sativa (japonica cultivar-group) cDNA clon... 34 9.6
27dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 34 9.6

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 0.16
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 3      gccctgcgagcgctgctgcgcctt 26
              |||||||| |||||||||||||||
Sbjct: 804992 gccctgcgcgcgctgctgcgcctt 804969



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>gb|AF322013.1|AF322012S2 Bradyrhizobium japonicum symbiotic gene region, part 2 of 2
          Length = 230573

 Score = 38.2 bits (19), Expect = 0.62
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     ctgcgagcgctgctgcgcc 24
             |||||||||||||||||||
Sbjct: 42522 ctgcgagcgctgctgcgcc 42504



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 0.62
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 6       ctgcgagcgctgctgcgcc 24
               |||||||||||||||||||
Sbjct: 2101007 ctgcgagcgctgctgcgcc 2100989



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>ref|XM_512255.1| PREDICTED: Pan troglodytes similar to Anti-Mullerian hormone
            (LOC455569), mRNA
          Length = 2211

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    ccctgcgagcgctgctgc 21
            ||||||||||||||||||
Sbjct: 1466 ccctgcgagcgctgctgc 1483



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>gb|BT016202.1| Zea mays clone Contig35 mRNA sequence
          Length = 1266

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   tggccctgcgagcgctgc 18
           ||||||||||||||||||
Sbjct: 775 tggccctgcgagcgctgc 792



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>gb|BC049194.1| Homo sapiens anti-Mullerian hormone, mRNA (cDNA clone MGC:54208
            IMAGE:5168299), complete cds
          Length = 1868

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    ccctgcgagcgctgctgc 21
            ||||||||||||||||||
Sbjct: 1284 ccctgcgagcgctgctgc 1301



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>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940128D9, complete sequence
          Length = 128585

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 1     tggccctgcgagcgctgctgcg 22
             |||||||||| |||||||||||
Sbjct: 90803 tggccctgcgggcgctgctgcg 90824



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>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 1      tggccctgcgagcgctgctgcg 22
              |||||||||| |||||||||||
Sbjct: 243487 tggccctgcgcgcgctgctgcg 243508



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>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14
          Length = 348257

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 1      tggccctgcgagcgctgctgcg 22
              |||||||||| |||||||||||
Sbjct: 157419 tggccctgcgcgcgctgctgcg 157440



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>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12
          Length = 348134

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 1      tggccctgcgagcgctgctgcg 22
              |||||||||| |||||||||||
Sbjct: 222624 tggccctgcgcgcgctgctgcg 222603



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>gb|AC016251.9| Homo sapiens chromosome 15, clone RP11-759A24, complete sequence
          Length = 182943

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     tggccctgcgagcgctgc 18
             ||||||||||||||||||
Sbjct: 11770 tggccctgcgagcgctgc 11787



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>ref|NM_000479.2| Homo sapiens anti-Mullerian hormone (AMH), mRNA
          Length = 2008

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    ccctgcgagcgctgctgc 21
            ||||||||||||||||||
Sbjct: 1472 ccctgcgagcgctgctgc 1489



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>gb|AC138127.1| Homo sapiens chromosome 19 clone LLNLR-281G7, complete sequence
          Length = 40616

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     ccctgcgagcgctgctgc 21
             ||||||||||||||||||
Sbjct: 26331 ccctgcgagcgctgctgc 26348



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>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                     
Query: 3       gccctgcgagcgctgctgcgcc 24
               ||||||||| ||||||||||||
Sbjct: 2030984 gccctgcgatcgctgctgcgcc 2030963



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>gb|AC005263.1|AC005263 Homo sapiens chromosome 19, cosmid F20489, complete sequence
          Length = 35737

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     ccctgcgagcgctgctgc 21
             ||||||||||||||||||
Sbjct: 32427 ccctgcgagcgctgctgc 32444



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>gb|K03474.1|HUMMIS Human Mullerian inhibiting substance gene, complete cds
          Length = 3100

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    ccctgcgagcgctgctgc 21
            ||||||||||||||||||
Sbjct: 2414 ccctgcgagcgctgctgc 2431



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>ref|NM_053457.2| Rattus norvegicus claudin 11 (Cldn11), mRNA
          Length = 1873

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                           
Query: 6  ctgcgagcgctgctgcg 22
          |||||||||||||||||
Sbjct: 54 ctgcgagcgctgctgcg 38



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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                    
Query: 5       cctgcgagcgctgctgcgcct 25
               |||| ||||||||||||||||
Sbjct: 1766814 cctgggagcgctgctgcgcct 1766794



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>ref|XM_533286.2| PREDICTED: Canis familiaris similar to Microsomal glutathione
          S-transferase 2 (Microsomal GST-2) (Microsomal GST-II)
          (LOC476078), mRNA
          Length = 369

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 5  cctgcgagcgctgctgc 21
          |||||||||||||||||
Sbjct: 29 cctgcgagcgctgctgc 45



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>gb|AY597283.1| Pseudomonas viridiflava strain RMX3.1b pathogenicity island
            PAI-Region-2, partial sequence
          Length = 39281

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                 
Query: 3    gccctgcgagcgctgctgcgc 23
            |||||||||||| ||||||||
Sbjct: 8732 gccctgcgagcgatgctgcgc 8752



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>dbj|AB223411.1| Aspergillus oryzae cDNA, contig sequence: AoEST0243
          Length = 732

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 6   ctgcgagcgctgctgcg 22
           |||||||||||||||||
Sbjct: 464 ctgcgagcgctgctgcg 448



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>dbj|AB223273.1| Aspergillus oryzae cDNA, contig sequence: AoEST0104
          Length = 652

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 6   ctgcgagcgctgctgcg 22
           |||||||||||||||||
Sbjct: 409 ctgcgagcgctgctgcg 393



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                 
Query: 1        tggccctgcgagcgctg 17
                |||||||||||||||||
Sbjct: 20341606 tggccctgcgagcgctg 20341622



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>gb|BC070927.1| Rattus norvegicus claudin 11, mRNA (cDNA clone MGC:91580
          IMAGE:7096642), complete cds
          Length = 1873

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                           
Query: 6  ctgcgagcgctgctgcg 22
          |||||||||||||||||
Sbjct: 54 ctgcgagcgctgctgcg 38



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>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1439_F07
          Length = 153743

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 1      tggccctgcgagcgctg 17
              |||||||||||||||||
Sbjct: 120733 tggccctgcgagcgctg 120749



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>dbj|AK111128.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-C09, full
           insert sequence
          Length = 956

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 1   tggccctgcgagcgctg 17
           |||||||||||||||||
Sbjct: 141 tggccctgcgagcgctg 125



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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 13      cgctgctgcgcctttag 29
               |||||||||||||||||
Sbjct: 1237577 cgctgctgcgcctttag 1237593


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 108,924
Number of Sequences: 3902068
Number of extensions: 108924
Number of successful extensions: 32232
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31879
Number of HSP's gapped (non-prelim): 353
length of query: 31
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 11
effective length of database: 17,155,003,908
effective search space: 188705042988
effective search space used: 188705042988
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)
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