Clone Name | bags9f21 |
---|---|
Clone Library Name | barley_pub |
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 0.16 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 gccctgcgagcgctgctgcgcctt 26 |||||||| ||||||||||||||| Sbjct: 804992 gccctgcgcgcgctgctgcgcctt 804969
>gb|AF322013.1|AF322012S2 Bradyrhizobium japonicum symbiotic gene region, part 2 of 2 Length = 230573 Score = 38.2 bits (19), Expect = 0.62 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 ctgcgagcgctgctgcgcc 24 ||||||||||||||||||| Sbjct: 42522 ctgcgagcgctgctgcgcc 42504
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 38.2 bits (19), Expect = 0.62 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 ctgcgagcgctgctgcgcc 24 ||||||||||||||||||| Sbjct: 2101007 ctgcgagcgctgctgcgcc 2100989
>ref|XM_512255.1| PREDICTED: Pan troglodytes similar to Anti-Mullerian hormone (LOC455569), mRNA Length = 2211 Score = 36.2 bits (18), Expect = 2.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 ccctgcgagcgctgctgc 21 |||||||||||||||||| Sbjct: 1466 ccctgcgagcgctgctgc 1483
>gb|BT016202.1| Zea mays clone Contig35 mRNA sequence Length = 1266 Score = 36.2 bits (18), Expect = 2.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 tggccctgcgagcgctgc 18 |||||||||||||||||| Sbjct: 775 tggccctgcgagcgctgc 792
>gb|BC049194.1| Homo sapiens anti-Mullerian hormone, mRNA (cDNA clone MGC:54208 IMAGE:5168299), complete cds Length = 1868 Score = 36.2 bits (18), Expect = 2.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 ccctgcgagcgctgctgc 21 |||||||||||||||||| Sbjct: 1284 ccctgcgagcgctgctgc 1301
>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940128D9, complete sequence Length = 128585 Score = 36.2 bits (18), Expect = 2.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 1 tggccctgcgagcgctgctgcg 22 |||||||||| ||||||||||| Sbjct: 90803 tggccctgcgggcgctgctgcg 90824
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 36.2 bits (18), Expect = 2.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 1 tggccctgcgagcgctgctgcg 22 |||||||||| ||||||||||| Sbjct: 243487 tggccctgcgcgcgctgctgcg 243508
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 36.2 bits (18), Expect = 2.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 1 tggccctgcgagcgctgctgcg 22 |||||||||| ||||||||||| Sbjct: 157419 tggccctgcgcgcgctgctgcg 157440
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 36.2 bits (18), Expect = 2.4 Identities = 21/22 (95%) Strand = Plus / Minus Query: 1 tggccctgcgagcgctgctgcg 22 |||||||||| ||||||||||| Sbjct: 222624 tggccctgcgcgcgctgctgcg 222603
>gb|AC016251.9| Homo sapiens chromosome 15, clone RP11-759A24, complete sequence Length = 182943 Score = 36.2 bits (18), Expect = 2.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 tggccctgcgagcgctgc 18 |||||||||||||||||| Sbjct: 11770 tggccctgcgagcgctgc 11787
>ref|NM_000479.2| Homo sapiens anti-Mullerian hormone (AMH), mRNA Length = 2008 Score = 36.2 bits (18), Expect = 2.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 ccctgcgagcgctgctgc 21 |||||||||||||||||| Sbjct: 1472 ccctgcgagcgctgctgc 1489
>gb|AC138127.1| Homo sapiens chromosome 19 clone LLNLR-281G7, complete sequence Length = 40616 Score = 36.2 bits (18), Expect = 2.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 ccctgcgagcgctgctgc 21 |||||||||||||||||| Sbjct: 26331 ccctgcgagcgctgctgc 26348
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 36.2 bits (18), Expect = 2.4 Identities = 21/22 (95%) Strand = Plus / Minus Query: 3 gccctgcgagcgctgctgcgcc 24 ||||||||| |||||||||||| Sbjct: 2030984 gccctgcgatcgctgctgcgcc 2030963
>gb|AC005263.1|AC005263 Homo sapiens chromosome 19, cosmid F20489, complete sequence Length = 35737 Score = 36.2 bits (18), Expect = 2.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 ccctgcgagcgctgctgc 21 |||||||||||||||||| Sbjct: 32427 ccctgcgagcgctgctgc 32444
>gb|K03474.1|HUMMIS Human Mullerian inhibiting substance gene, complete cds Length = 3100 Score = 36.2 bits (18), Expect = 2.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 ccctgcgagcgctgctgc 21 |||||||||||||||||| Sbjct: 2414 ccctgcgagcgctgctgc 2431
>ref|NM_053457.2| Rattus norvegicus claudin 11 (Cldn11), mRNA Length = 1873 Score = 34.2 bits (17), Expect = 9.6 Identities = 17/17 (100%) Strand = Plus / Minus Query: 6 ctgcgagcgctgctgcg 22 ||||||||||||||||| Sbjct: 54 ctgcgagcgctgctgcg 38
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 34.2 bits (17), Expect = 9.6 Identities = 20/21 (95%) Strand = Plus / Minus Query: 5 cctgcgagcgctgctgcgcct 25 |||| |||||||||||||||| Sbjct: 1766814 cctgggagcgctgctgcgcct 1766794
>ref|XM_533286.2| PREDICTED: Canis familiaris similar to Microsomal glutathione S-transferase 2 (Microsomal GST-2) (Microsomal GST-II) (LOC476078), mRNA Length = 369 Score = 34.2 bits (17), Expect = 9.6 Identities = 17/17 (100%) Strand = Plus / Plus Query: 5 cctgcgagcgctgctgc 21 ||||||||||||||||| Sbjct: 29 cctgcgagcgctgctgc 45
>gb|AY597283.1| Pseudomonas viridiflava strain RMX3.1b pathogenicity island PAI-Region-2, partial sequence Length = 39281 Score = 34.2 bits (17), Expect = 9.6 Identities = 20/21 (95%) Strand = Plus / Plus Query: 3 gccctgcgagcgctgctgcgc 23 |||||||||||| |||||||| Sbjct: 8732 gccctgcgagcgatgctgcgc 8752
>dbj|AB223411.1| Aspergillus oryzae cDNA, contig sequence: AoEST0243 Length = 732 Score = 34.2 bits (17), Expect = 9.6 Identities = 17/17 (100%) Strand = Plus / Minus Query: 6 ctgcgagcgctgctgcg 22 ||||||||||||||||| Sbjct: 464 ctgcgagcgctgctgcg 448
>dbj|AB223273.1| Aspergillus oryzae cDNA, contig sequence: AoEST0104 Length = 652 Score = 34.2 bits (17), Expect = 9.6 Identities = 17/17 (100%) Strand = Plus / Minus Query: 6 ctgcgagcgctgctgcg 22 ||||||||||||||||| Sbjct: 409 ctgcgagcgctgctgcg 393
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 34.2 bits (17), Expect = 9.6 Identities = 17/17 (100%) Strand = Plus / Plus Query: 1 tggccctgcgagcgctg 17 ||||||||||||||||| Sbjct: 20341606 tggccctgcgagcgctg 20341622
>gb|BC070927.1| Rattus norvegicus claudin 11, mRNA (cDNA clone MGC:91580 IMAGE:7096642), complete cds Length = 1873 Score = 34.2 bits (17), Expect = 9.6 Identities = 17/17 (100%) Strand = Plus / Minus Query: 6 ctgcgagcgctgctgcg 22 ||||||||||||||||| Sbjct: 54 ctgcgagcgctgctgcg 38
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 34.2 bits (17), Expect = 9.6 Identities = 17/17 (100%) Strand = Plus / Plus Query: 1 tggccctgcgagcgctg 17 ||||||||||||||||| Sbjct: 120733 tggccctgcgagcgctg 120749
>dbj|AK111128.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-C09, full insert sequence Length = 956 Score = 34.2 bits (17), Expect = 9.6 Identities = 17/17 (100%) Strand = Plus / Minus Query: 1 tggccctgcgagcgctg 17 ||||||||||||||||| Sbjct: 141 tggccctgcgagcgctg 125
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 34.2 bits (17), Expect = 9.6 Identities = 17/17 (100%) Strand = Plus / Plus Query: 13 cgctgctgcgcctttag 29 ||||||||||||||||| Sbjct: 1237577 cgctgctgcgcctttag 1237593 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 108,924 Number of Sequences: 3902068 Number of extensions: 108924 Number of successful extensions: 32232 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31879 Number of HSP's gapped (non-prelim): 353 length of query: 31 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 11 effective length of database: 17,155,003,908 effective search space: 188705042988 effective search space used: 188705042988 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 17 (34.2 bits)