Clone Information

BLAST Search Result

Clone Name	bags9f20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 i...	83	6e-16
2	GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein	40	0.006
3	PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b...	39	0.013
4	TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)	37	0.037
5	TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)	37	0.037
6	TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p...	37	0.037
7	TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)	36	0.063
8	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	35	0.11
9	GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro...	35	0.14
10	GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A	35	0.14
11	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	35	0.18
12	PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppres...	34	0.24
13	GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A	34	0.24
14	ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (...	34	0.31
15	ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn...	34	0.31
16	ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (...	34	0.31
17	GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10	33	0.54
18	CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine...	33	0.54
19	MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote...	33	0.54
20	U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 aux...	33	0.70
21	U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 aux...	33	0.70
22	PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 ...	33	0.70
23	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	32	0.92
24	YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i...	32	1.2
25	PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 ...	32	1.2
26	SXL_CHRRU (O97018) Sex-lethal homolog	32	1.2
27	GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7	32	1.6
28	ALDH_ALTAL (P42041) Aldehyde dehydrogenase (EC 1.2.1.3) (ALDDH) ...	31	2.0
29	U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 aux...	31	2.0
30	ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (...	31	2.0
31	PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 ...	31	2.7
32	SXL_MUSDO (O17310) Sex-lethal homolog	31	2.7
33	PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 ...	31	2.7
34	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	30	3.5
35	PBPA_XYLFA (Q9PGD4) Penicillin-binding protein 1A (PBP-1a) (PBP1...	30	3.5
36	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	30	3.5
37	ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1	30	3.5
38	POLG_HCVBB (Q68749) Genome polyprotein [Contains: Core protein p...	30	3.5
39	CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r...	30	4.5
40	CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine...	30	4.5
41	CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine...	30	4.5
42	VATA_THET8 (Q56403) V-type ATP synthase alpha chain (EC 3.6.3.14...	30	4.5
43	RMIL_AVEVR (P27966) Serine/threonine-protein kinase transforming...	30	5.9
44	BRAF1_HUMAN (P15056) B-Raf proto-oncogene serine/threonine-prote...	30	5.9
45	SXL_DROSU (Q24668) Protein sex-lethal	30	5.9
46	SXL_DROME (P19339) Protein sex-lethal	30	5.9
47	RMIL_AVII1 (P10533) Serine/threonine-protein kinase transforming...	30	5.9
48	BRAF1_COTJA (P34908) B-Raf proto-oncogene serine/threonine-prote...	30	5.9
49	BRAF1_CHICK (Q04982) B-Raf proto-oncogene serine/threonine-prote...	30	5.9
50	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	29	7.8
51	CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine...	29	7.8
52	CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine...	29	7.8
53	VATA_SULTO (Q971B7) V-type ATP synthase alpha chain (EC 3.6.3.14...	29	7.8
54	VATA_SULAC (Q4J8L9) V-type ATP synthase alpha chain (EC 3.6.3.14...	29	7.8

>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I|
          Length = 219

 Score = 82.8 bits (203), Expect = 6e-16
 Identities = 40/66 (60%), Positives = 48/66 (72%)
 Frame = +2

Query: 356 KKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 535
           K T+ R+A GQ WEDPTL EW  N +RLF G+LGN+VND+ L +AFS +PS    KVVRD
Sbjct: 5   KTTVVRKAGGQVWEDPTLLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD 64

Query: 536 KRTGKT 553
            R GKT
Sbjct: 65  -REGKT 69

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>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +2

Query: 422 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           E +YR F G L    ND+ L +AFS+F     +K++ D+ TG++
Sbjct: 3   EVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRS 46

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>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +2

Query: 359 KTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDK 538
           K I       +W   +     ++ + LF GDL   V+D+ L  AF  FPS+    V+ D 
Sbjct: 137 KQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM 196

Query: 539 RTGKT 553
           +TG +
Sbjct: 197 QTGSS 201

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>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +2

Query: 425 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           N + +F GDL  E+  + +  AF+ F   + A+VV+D  TGK+
Sbjct: 112 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKS 154

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>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +2

Query: 425 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           N + +F GDL  E+  + +  AF+ F   + A+VV+D  TGK+
Sbjct: 95  NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKS 137

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>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = +2

Query: 410 TEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           T+  +N + +F GDL  ++  + +  AF+ F   + A+VV+D  TGK+
Sbjct: 99  TQRSQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKS 146

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>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 36.2 bits (82), Expect = 0.063
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = +2

Query: 410 TEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           T+  ++ + +F GDL  E+  + +  AF+ F   + A+VV+D  TGK+
Sbjct: 99  TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKS 146

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>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 23/98 (23%), Positives = 47/98 (47%)
 Frame = +2

Query: 260 ALESVKAALATSDVLDPSAARATASSSDPAAKKKTIPRRAAGQSWEDPTLTEWPENDYRL 439
           A+E  + +L + DV +   +   AS  D +   ++    + G   E     E P  + +L
Sbjct: 94  AVEETENSLESQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPE-PSEEAKL 152

Query: 440 FCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           F G+L  +VN   L+  F +  +  +A+V+ ++ T ++
Sbjct: 153 FVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQS 190

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>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 422 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           E +YR F G L    ND+ L + FS+F     +K++ D+ +G++
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRS 46

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>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 419 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           P+ +YR F G L    +D  L  AFS++     +K++ D+ TG++
Sbjct: 4   PDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRS 48

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>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 34.7 bits (78), Expect = 0.18
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 428 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           +YR F G L    N++ L +AF+ F     +KV+ D+ TG++
Sbjct: 7   EYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRS 48

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>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)|
          Length = 611

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 437 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           LF GDL   V ++ L   F ++PSF  AKV  D  T K+
Sbjct: 93  LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKS 131

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>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 419 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           P+ +YR F G L    ++  L  AFS+F     +K++ D+ TG++
Sbjct: 4   PDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRS 48

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>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +2

Query: 371 RRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 550
           RR  G+   DP   + PE   +LF G L  E  DD L + F ++ +     V+RD +T +
Sbjct: 18  RRRRGEEGHDP---KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKR 74

Query: 551 T 553
           +
Sbjct: 75  S 75

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>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +2

Query: 371 RRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 550
           RR  G+   DP   + PE   +LF G L  E  DD L + F ++ +     V+RD +T +
Sbjct: 18  RRRRGEEGHDP---KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKR 74

Query: 551 T 553
           +
Sbjct: 75  S 75

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>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +2

Query: 371 RRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 550
           RR  G+   DP   + PE   +LF G L  E  DD L + F ++ +     V+RD +T +
Sbjct: 18  RRRRGEEGHDP---KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKR 74

Query: 551 T 553
           +
Sbjct: 75  S 75

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>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 422 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           E +YR F G L     D  L + FS+F     +K++ D+ TG++
Sbjct: 3   EVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRS 46

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>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 434 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           +LF G L  E N+D L +AF+++   +   VV+D+ T ++
Sbjct: 6   KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRS 45

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>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 23/94 (24%), Positives = 40/94 (42%)
 Frame = +2

Query: 272 VKAALATSDVLDPSAARATASSSDPAAKKKTIPRRAAGQSWEDPTLTEWPENDYRLFCGD 451
           V+   + ++  + S++ AT  +     KK+  P RA  Q  ++    E      RLF  +
Sbjct: 292 VRIKESEAETREKSSSYATEQNESLDTKKEEQPERAVPQKTDEELAIEKINQTGRLFLRN 351

Query: 452 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           +     ++   K FS F       V  D RTG++
Sbjct: 352 ILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQS 385

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>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 475

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 419 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTG 547
           P++ ++LF G L N +NDD + +  + F       +V+D  TG
Sbjct: 255 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 297

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>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (hU2AF(65))
          Length = 475

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 419 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTG 547
           P++ ++LF G L N +NDD + +  + F       +V+D  TG
Sbjct: 255 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 297

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>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 461

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
 Frame = +2

Query: 254 PEALESVKAALATSDVLDPSAARATASSSDPAAKKKTIPRRAAGQSWE---DPTLTEWPE 424
           PE+    KA LAT  + D          +     ++    RA   + E   D    E   
Sbjct: 186 PESPLPTKAQLATVRIADDEDLGDDMDEASMEKLRREREARAQALTLEMVGDLPFAEVKP 245

Query: 425 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTG 547
            +  LF   L     D+ L   FSRF      +V+RDKRTG
Sbjct: 246 PENVLFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTG 286

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>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
 Frame = +2

Query: 248 ITPEALESVKAALATSDVLDPSAARATASSSDPAAKKKTIPRRAA----------GQSWE 397
           +TP+   S+K     S    PS++   + SS         P  ++           Q  +
Sbjct: 14  VTPQTPSSLKPNSTLSFFSLPSSSLNLSLSSSSTGLCSIKPFESSFSTRVALSGFDQLED 73

Query: 398 DPTLTEWPE--NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           D  + E P    D +LF G+L   V+   L+  F R  +  M +V+ DK TG++
Sbjct: 74  DVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRS 127

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>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 425 NDYRLFCGDLGNEVND-DVLSKAFSRFPSFNMAKVVRDKRT 544
           ++Y +F GDL   VN+ DV S   SR+ S   AK++ D +T
Sbjct: 184 SEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQT 224

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>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 494

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
 Frame = +2

Query: 275 KAALATSDVLDPSAARATASSSDPAAK--KKTIPRRAAGQSWEDPTLTEWPENDYR---- 436
           KA LAT  + +        +S + AA+  ++   R AA Q+     + + P  + +    
Sbjct: 194 KAQLATVRITEGEELLDVEASEEAAAEAERRRREREAAAQALTLEMMGDLPFAEVKPPEN 253

Query: 437 -LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTG 547
            LF   L     D+ L   FSRF      +V+RD++TG
Sbjct: 254 VLFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTG 291

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>SXL_CHRRU (O97018) Sex-lethal homolog|
          Length = 307

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 428 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 550
           D  L+  +L   + DD L K F ++ +     ++RDK TGK
Sbjct: 170 DTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGK 210

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>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 428 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           +YR F G L    +D  L  AF+++     +K++ D+ TG++
Sbjct: 7   EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRS 48

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>ALDH_ALTAL (P42041) Aldehyde dehydrogenase (EC 1.2.1.3) (ALDDH) (Allergen Alt|
           a 10) (Alt a X)
          Length = 495

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
 Frame = +2

Query: 290 TSDVLDPSAARATASSSDPAAKKKTIPRRAAGQSWEDPTLTEWPENDYRLF--CGDLGNE 463
           T DV++PS      S  +   K   I   AA +++  P   E PEN  +L     DL  E
Sbjct: 34  TFDVINPSTEEVICSVQEATEKDVDIAVAAARKAFNGPWAKETPENRGKLLNKLADL-FE 92

Query: 464 VNDDVLS--KAFSRFPSFNMAKVV 529
            N D+++  +A     +F+MAK V
Sbjct: 93  KNADLIAAVEALDNGKAFSMAKNV 116

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>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor|
           50 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 416

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 419 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTG 547
           P++ +++F G L N +NDD + +    F       +V+D  TG
Sbjct: 203 PDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATG 245

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>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 434 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 550
           +LF G L  +V +  L + FS+F +   A+++ DK++GK
Sbjct: 99  KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGK 137

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>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 459

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
 Frame = +2

Query: 275 KAALATSDVLDPSAARATASSSDPAAKKKTIPRRAAGQSWEDPTLTEWPENDYR-----L 439
           KA LAT  + D        +  + A +K    R A  Q+     + + P  + +     L
Sbjct: 193 KAQLATVRIADDE--ELDDNMDEEAMEKLRREREARAQALTLEMVGDLPFAEVKPPENVL 250

Query: 440 FCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTG 547
           F   L     D+ L   FSRF      +V+RDKRTG
Sbjct: 251 FVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTG 286

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>SXL_MUSDO (O17310) Sex-lethal homolog|
          Length = 324

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 428 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 550
           D  L+  +L   + DD L K F ++ +     ++RDK TG+
Sbjct: 187 DTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGR 227

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>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 461

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +2

Query: 419 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTG 547
           PEN   LF   L     D+ L   FSRF +    +V+RDKRTG
Sbjct: 246 PENV--LFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTG 286

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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 422 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           E  YR++ G++   ++D  L + FS       A+VV D+ TG++
Sbjct: 227 EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRS 270

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>PBPA_XYLFA (Q9PGD4) Penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes:|
           Penicillin-insensitive transglycosylase (EC 2.4.2.-)
           (Peptidoglycan TGase); Penicillin-sensitive
           transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]
          Length = 809

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +2

Query: 251 TPEALESVKAALATSDVLDPSAARATASSSDPAAKKKTIPRRAAGQSWEDPTLTEWPEND 430
           TPE    V  +  +   L P+AAR T +  +   K+  + R   G+ W + TL + P   
Sbjct: 362 TPEGSAVVVRSDRSELTLPPAAARWTGTPLNKLLKRGDVVRVRPGEKWGEWTLEQLPSAQ 421

Query: 431 YRLFCGDLGN 460
             L   D  N
Sbjct: 422 STLVSLDANN 431

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>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 428 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           +YR F G L    +++ L  AF+ +     +KV+ D+ TG++
Sbjct: 7   EYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRS 48

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>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 419 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           PEN  ++F G L +   DD++ + +S+F       V+RD  T ++
Sbjct: 19  PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRS 63

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>POLG_HCVBB (Q68749) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3036

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 314 AARATASSSDPAAKKKTIP--RRAAGQSWEDPTLTEWP 421
           AAR T+  S P  +++ IP  RR+ G+SW  P    WP
Sbjct: 47  AARKTSERSQPRGRRQPIPKDRRSTGKSWGRPGY-PWP 83

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>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 434 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           +LF G L  + N+  L + FS++   +   VV+D+ T ++
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRS 46

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>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 434 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           +LF G L  + N+  L + FS++   +   VV+D+ T ++
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRS 46

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>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 434 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           +LF G L  + N+  L + FS++   +   VV+D+ T ++
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRS 46

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>VATA_THET8 (Q56403) V-type ATP synthase alpha chain (EC 3.6.3.14) (V-type|
           ATPase subunit A)
          Length = 578

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 296 DVLDPSAARATASSSDPAAKKKTIPRRAAGQSWEDPTLTEWPENDYRLF--CGDLGNEVN 469
           DVL P A   TA+   P    KT+ ++         +L +W   D  ++  CG+ GNE+ 
Sbjct: 213 DVLFPVAMGGTAAIPGPFGSGKTVTQQ---------SLAKWSNADVVVYVGCGERGNEMT 263

Query: 470 D 472
           D
Sbjct: 264 D 264

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>RMIL_AVEVR (P27966) Serine/threonine-protein kinase transforming protein Rmil|
           (EC 2.7.11.1)
          Length = 450

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 254 PEALESVKAALATSDVLDPSAARATASSSDPAAKKKTIPRRAAGQSWEDP 403
           P +L +VKA   +     P   R ++SSS+   + KT+ RR +   WE P
Sbjct: 33  PGSLTNVKALQKSPG---PQRERKSSSSSEDRNRMKTLGRRDSSDDWEIP 79

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>BRAF1_HUMAN (P15056) B-Raf proto-oncogene serine/threonine-protein kinase (EC|
           2.7.11.1) (p94) (v-Raf murine sarcoma viral oncogene
           homolog B1)
          Length = 766

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 254 PEALESVKAALATSDVLDPSAARATASSSDPAAKKKTIPRRAAGQSWEDP 403
           P +L +VKA   +     P   R ++SSS+   + KT+ RR +   WE P
Sbjct: 407 PGSLTNVKALQKSPG---PQRERKSSSSSEDRNRMKTLGRRDSSDDWEIP 453

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>SXL_DROSU (Q24668) Protein sex-lethal|
          Length = 354

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 428 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 550
           D  L+  +L   + DD L   F ++ S     ++RDK TG+
Sbjct: 212 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGR 252

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>SXL_DROME (P19339) Protein sex-lethal|
          Length = 354

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 428 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 550
           D  L+  +L   + DD L   F ++ S     ++RDK TG+
Sbjct: 210 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGR 250

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>RMIL_AVII1 (P10533) Serine/threonine-protein kinase transforming protein Rmil|
           (EC 2.7.11.1)
          Length = 367

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 254 PEALESVKAALATSDVLDPSAARATASSSDPAAKKKTIPRRAAGQSWEDP 403
           P +L +VKA   +     P   R ++SSS+   + KT+ RR +   WE P
Sbjct: 17  PGSLTNVKALQKSPG---PQRERKSSSSSEDRNRMKTLGRRDSSDDWEIP 63

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>BRAF1_COTJA (P34908) B-Raf proto-oncogene serine/threonine-protein kinase (EC|
           2.7.11.1) (RMIL serine/threonine-protein kinase)
           (c-RMIL)
          Length = 807

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 254 PEALESVKAALATSDVLDPSAARATASSSDPAAKKKTIPRRAAGQSWEDP 403
           P +L +VKA   +     P   R ++SSS+   + KT+ RR +   WE P
Sbjct: 447 PGSLTNVKALQKSPG---PQRERKSSSSSEDRNRMKTLGRRDSSDDWEIP 493

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>BRAF1_CHICK (Q04982) B-Raf proto-oncogene serine/threonine-protein kinase (EC|
           2.7.11.1) (Rmil serine/threonine-protein kinase)
           (c-Rmil)
          Length = 806

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 254 PEALESVKAALATSDVLDPSAARATASSSDPAAKKKTIPRRAAGQSWEDP 403
           P +L +VKA   +     P   R ++SSS+   + KT+ RR +   WE P
Sbjct: 447 PGSLTNVKALQKSPG---PQRERKSSSSSEDRNRMKTLGRRDSSDDWEIP 493

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>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 428 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           D +LF G+L   V+   L++ F    +  M +V+ DK TG++
Sbjct: 98  DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRS 139

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>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 434 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           +LF G L  + N+  L + FS++   +   VV+D+ T ++
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRS 46

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>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 434 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 553
           +LF G L  + N+  L + FS++   +   VV+D+ T ++
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRS 46

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>VATA_SULTO (Q971B7) V-type ATP synthase alpha chain (EC 3.6.3.14) (V-type|
           ATPase subunit A) (Sul-ATPase alpha chain)
          Length = 591

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
 Frame = +2

Query: 257 EALESVKAALATSDVLD---PSAARATASSSDPAAKKKTIPRRAAGQSWEDPTLTEWPEN 427
           E LE V+  L    VLD   P A   TA+   P    KT+  ++         L +W   
Sbjct: 202 EKLEPVEPLLTGIRVLDTVFPIAKGGTAAIPGPFGSGKTVTLQS---------LAKWSAA 252

Query: 428 DYRLF--CGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 550
              ++  CG+ GNE+ D++ S     FP       ++D  TGK
Sbjct: 253 KVVIYVGCGERGNEMTDELRS-----FPK------LKDPWTGK 284

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>VATA_SULAC (Q4J8L9) V-type ATP synthase alpha chain (EC 3.6.3.14) (V-type|
           ATPase subunit A)
          Length = 592

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
 Frame = +2

Query: 257 EALESVKAALATSDVLD---PSAARATASSSDPAAKKKTIPRRAAGQSWEDPTLTEWPEN 427
           E LE  +  L  + V+D   P A   TA+   P    KT+  ++         L +W E 
Sbjct: 203 EKLEPTEPLLTGTRVVDTIFPIAKGGTAAIPGPFGSGKTVTLQS---------LAKWSEA 253

Query: 428 DYRLF--CGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 550
              ++  CG+ GNE+ D++      +FP       ++D  TGK
Sbjct: 254 KVVIYVGCGERGNEMTDEL-----RQFPK------LKDPWTGK 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,725,717
Number of Sequences: 219361
Number of extensions: 635795
Number of successful extensions: 2520
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 2465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2517
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result