ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9f19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066934.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093A09, full insert sequence Length = 2372 Score = 244 bits (123), Expect = 1e-61 Identities = 216/248 (87%) Strand = Plus / Plus Query: 5 atgtatgtgaaaagaacacctgaaattagtaaagcgatacatgtttactctagtgctctg 64 ||||||||||| || || |||||| ||| ||| | ||||| |||||||||||||||| Sbjct: 1305 atgtatgtgaagaggactcctgaacttaacaaatctatacacatttactctagtgctctt 1364 Query: 65 aaagctacattgacctggcagaatatgaccacncttcaggagtgtcgtgaggcctgtggt 124 ||||||||| | |||||||||||||||||||| ||||||||||| ||||| || |||||| Sbjct: 1365 aaagctacacttacctggcagaatatgaccacacttcaggagtgccgtgaagcttgtggt 1424 Query: 125 ggccaaggtttaaagaccgagaatcgcgttggaatttttaaagccgaatttgatgttcaa 184 ||||||||||| ||||| ||||||||| | |||||||| ||||| ||||||||||| || Sbjct: 1425 ggccaaggtttgaagacagagaatcgcataggaattttcaaagctgaatttgatgtccag 1484 Query: 185 tctacatttganggtgacaataatgttctactccagcaggtnagcaaagccctgtatgcc 244 ||||||||||| || ||||||||||||||| | |||||||| ||||||||||| ||||| Sbjct: 1485 tctacatttgagggcgacaataatgttctaatgcagcaggtaagcaaagccctttatgct 1544 Query: 245 gaattttt 252 |||||||| Sbjct: 1545 gaattttt 1552
>gb|AY106428.1| Zea mays PCO134965 mRNA sequence Length = 1659 Score = 172 bits (87), Expect = 4e-40 Identities = 210/252 (83%) Strand = Plus / Plus Query: 1 aaatatgtatgtgaaaagaacacctgaaattagtaaagcgatacatgtttactctagtgc 60 |||||||||||| || ||||| |||||||| || |||| ||||| ||||||||||||| Sbjct: 515 aaatatgtatgtaaagagaactcctgaaatgagcaaagacatacacatttactctagtgc 574 Query: 61 tctgaaagctacattgacctggcagaatatgaccacncttcaggagtgtcgtgaggcctg 120 |||||| || ||| | || ||||||||||||| || ||||||||||||| |||||||| Sbjct: 575 tctgaaggcgacactaacttggcagaatatgattacgattcaggagtgtcgcgaggcctg 634 Query: 121 tggtggccaaggtttaaagaccgagaatcgcgttggaatttttaaagccgaatttgatgt 180 ||| || |||||| ||||||| ||||| ||| | |||||||| ||| | ||||||||||| Sbjct: 635 tggaggtcaaggtctaaagactgagaaccgcataggaattttcaaatctgaatttgatgt 694 Query: 181 tcaatctacatttganggtgacaataatgttctactccagcaggtnagcaaagccctgta 240 || || |||||||| ||||| || ||||| ||| | |||||||| |||||||| || || Sbjct: 695 ccagtccacatttgagggtgataacaatgtgctaatgcagcaggtaagcaaagcgcttta 754 Query: 241 tgccgaattttt 252 ||| |||||||| Sbjct: 755 tgctgaattttt 766
>gb|BT018840.1| Zea mays clone EL01N0553A12.d mRNA sequence Length = 2469 Score = 157 bits (79), Expect = 2e-35 Identities = 208/252 (82%) Strand = Plus / Plus Query: 1 aaatatgtatgtgaaaagaacacctgaaattagtaaagcgatacatgtttactctagtgc 60 |||||||||||| | ||||| |||||||| || |||| ||||| ||||||||||||| Sbjct: 1370 aaatatgtatgtaaggagaactcctgaaatgagcaaagacatacacatttactctagtgc 1429 Query: 61 tctgaaagctacattgacctggcagaatatgaccacncttcaggagtgtcgtgaggcctg 120 |||||| || ||| | || ||||||||||||| || ||||||||||||| |||||||| Sbjct: 1430 tctgaaggcgacactaacttggcagaatatgattacgattcaggagtgtcgcgaggcctg 1489 Query: 121 tggtggccaaggtttaaagaccgagaatcgcgttggaatttttaaagccgaatttgatgt 180 ||| || |||||| | ||||| ||||| ||| | |||||||| ||| | ||||||||||| Sbjct: 1490 tggaggtcaaggtctgaagactgagaaccgcataggaattttcaaatctgaatttgatgt 1549 Query: 181 tcaatctacatttganggtgacaataatgttctactccagcaggtnagcaaagccctgta 240 || || |||||||| ||||| || ||||| ||| | |||||||| |||||||| || || Sbjct: 1550 ccagtccacatttgagggtgataacaatgtgctaatgcagcaggtaagcaaagcgcttta 1609 Query: 241 tgccgaattttt 252 ||| |||||||| Sbjct: 1610 tgctgaattttt 1621
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 129 bits (65), Expect = 5e-27 Identities = 109/124 (87%) Strand = Plus / Minus Query: 102 aggagtgtcgtgaggcctgtggtggccaaggtttaaagaccgagaatcgcgttggaattt 161 ||||||| ||||| || ||||||||||||||||| ||||| ||||||||| | ||||||| Sbjct: 14348292 aggagtgccgtgaagcttgtggtggccaaggtttgaagacagagaatcgcataggaattt 14348233 Query: 162 ttaaagccgaatttgatgttcaatctacatttganggtgacaataatgttctactccagc 221 | ||||| ||||||||||| || ||||||||||| || ||||||||||||||| | |||| Sbjct: 14348232 tcaaagctgaatttgatgtccagtctacatttgagggcgacaataatgttctaatgcagc 14348173 Query: 222 aggt 225 |||| Sbjct: 14348172 aggt 14348169 Score = 89.7 bits (45), Expect = 5e-15 Identities = 86/100 (86%) Strand = Plus / Minus Query: 5 atgtatgtgaaaagaacacctgaaattagtaaagcgatacatgtttactctagtgctctg 64 ||||||||||| || || |||||| ||| ||| | ||||| |||||||||||||||| Sbjct: 14348841 atgtatgtgaagaggactcctgaacttaacaaatctatacacatttactctagtgctctt 14348782 Query: 65 aaagctacattgacctggcagaatatgaccacncttcagg 104 ||||||||| | |||||||||||||||||||| ||||||| Sbjct: 14348781 aaagctacacttacctggcagaatatgaccacacttcagg 14348742 Score = 42.1 bits (21), Expect = 0.97 Identities = 29/32 (90%) Strand = Plus / Minus Query: 221 caggtnagcaaagccctgtatgccgaattttt 252 ||||| ||||||||||| ||||| |||||||| Sbjct: 14348087 caggtaagcaaagccctttatgctgaattttt 14348056
>dbj|AP003574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0526E12 Length = 150872 Score = 129 bits (65), Expect = 5e-27 Identities = 109/124 (87%) Strand = Plus / Minus Query: 102 aggagtgtcgtgaggcctgtggtggccaaggtttaaagaccgagaatcgcgttggaattt 161 ||||||| ||||| || ||||||||||||||||| ||||| ||||||||| | ||||||| Sbjct: 76167 aggagtgccgtgaagcttgtggtggccaaggtttgaagacagagaatcgcataggaattt 76108 Query: 162 ttaaagccgaatttgatgttcaatctacatttganggtgacaataatgttctactccagc 221 | ||||| ||||||||||| || ||||||||||| || ||||||||||||||| | |||| Sbjct: 76107 tcaaagctgaatttgatgtccagtctacatttgagggcgacaataatgttctaatgcagc 76048 Query: 222 aggt 225 |||| Sbjct: 76047 aggt 76044 Score = 89.7 bits (45), Expect = 5e-15 Identities = 86/100 (86%) Strand = Plus / Minus Query: 5 atgtatgtgaaaagaacacctgaaattagtaaagcgatacatgtttactctagtgctctg 64 ||||||||||| || || |||||| ||| ||| | ||||| |||||||||||||||| Sbjct: 76716 atgtatgtgaagaggactcctgaacttaacaaatctatacacatttactctagtgctctt 76657 Query: 65 aaagctacattgacctggcagaatatgaccacncttcagg 104 ||||||||| | |||||||||||||||||||| ||||||| Sbjct: 76656 aaagctacacttacctggcagaatatgaccacacttcagg 76617 Score = 42.1 bits (21), Expect = 0.97 Identities = 29/32 (90%) Strand = Plus / Minus Query: 221 caggtnagcaaagccctgtatgccgaattttt 252 ||||| ||||||||||| ||||| |||||||| Sbjct: 75962 caggtaagcaaagccctttatgctgaattttt 75931
>ref|NM_100511.1| Arabidopsis thaliana ACX3 (ACYL-COA OXIDASE 3); acyl-CoA oxidase AT1G06290 (ACX3) mRNA, complete cds Length = 2028 Score = 52.0 bits (26), Expect = 0.001 Identities = 37/41 (90%) Strand = Plus / Plus Query: 170 gaatttgatgttcaatctacatttganggtgacaataatgt 210 ||||||||||| || |||||||||| |||||||||||||| Sbjct: 1378 gaatttgatgtgcagactacatttgagggtgacaataatgt 1418
>gb|BT008413.1| Arabidopsis thaliana At1g06290 gene, complete cds Length = 2028 Score = 52.0 bits (26), Expect = 0.001 Identities = 37/41 (90%) Strand = Plus / Plus Query: 170 gaatttgatgttcaatctacatttganggtgacaataatgt 210 ||||||||||| || |||||||||| |||||||||||||| Sbjct: 1378 gaatttgatgtgcagactacatttgagggtgacaataatgt 1418
>gb|AY099579.1| Arabidopsis thaliana acyl-CoA oxidase ACX3 (At1g06290) mRNA, complete cds Length = 2375 Score = 52.0 bits (26), Expect = 0.001 Identities = 37/41 (90%) Strand = Plus / Plus Query: 170 gaatttgatgttcaatctacatttganggtgacaataatgt 210 ||||||||||| || |||||||||| |||||||||||||| Sbjct: 1449 gaatttgatgtgcagactacatttgagggtgacaataatgt 1489
>gb|AC068143.4|T2D23 Sequence of BAC T2D23 from Arabidopsis thaliana chromosome 1, complete sequence Length = 41039 Score = 52.0 bits (26), Expect = 0.001 Identities = 37/41 (90%) Strand = Plus / Plus Query: 170 gaatttgatgttcaatctacatttganggtgacaataatgt 210 ||||||||||| || |||||||||| |||||||||||||| Sbjct: 2783 gaatttgatgtgcagactacatttgagggtgacaataatgt 2823 Score = 44.1 bits (22), Expect = 0.25 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 ctacatttganggtgacaataatgt 210 |||||||||| |||||||||||||| Sbjct: 7072 ctacatttgagggtgacaataatgt 7096
>gb|AF253474.1|AF253474 Arabidopsis thaliana acyl-CoA oxidase (ACX3) mRNA, complete cds Length = 2246 Score = 52.0 bits (26), Expect = 0.001 Identities = 37/41 (90%) Strand = Plus / Plus Query: 170 gaatttgatgttcaatctacatttganggtgacaataatgt 210 ||||||||||| || |||||||||| |||||||||||||| Sbjct: 1431 gaatttgatgtgcagactacatttgagggtgacaataatgt 1471
>gb|AF207994.1|AF207994 Arabidopsis thaliana acyl-CoA oxidase ACX3 (ACX3) mRNA, complete cds Length = 2304 Score = 52.0 bits (26), Expect = 0.001 Identities = 37/41 (90%) Strand = Plus / Plus Query: 170 gaatttgatgttcaatctacatttganggtgacaataatgt 210 ||||||||||| || |||||||||| |||||||||||||| Sbjct: 1423 gaatttgatgtgcagactacatttgagggtgacaataatgt 1463
>dbj|AK176257.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-16-C12 Length = 2295 Score = 52.0 bits (26), Expect = 0.001 Identities = 37/41 (90%) Strand = Plus / Plus Query: 170 gaatttgatgttcaatctacatttganggtgacaataatgt 210 ||||||||||| || |||||||||| |||||||||||||| Sbjct: 1449 gaatttgatgtgcagactacatttgagggtgacaataatgt 1489
>ref|NM_100512.2| Arabidopsis thaliana ACX6; acyl-CoA oxidase/ oxidoreductase AT1G06310 (ACX6) mRNA, complete cds Length = 2070 Score = 44.1 bits (22), Expect = 0.25 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 ctacatttganggtgacaataatgt 210 |||||||||| |||||||||||||| Sbjct: 1405 ctacatttgagggtgacaataatgt 1429
>emb|AL645964.8| Mouse DNA sequence from clone RP23-335G10 on chromosome 11 Contains the 3' end of the Gabrb2 gene for subunit beta 2 gamma-aminobutyric acid (GABA-A) receptor, complete sequence Length = 195923 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaatatgtatgtgaaaagaa 20 |||||||||||||||||||| Sbjct: 149820 aaatatgtatgtgaaaagaa 149839 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,474,343 Number of Sequences: 3902068 Number of extensions: 2474343 Number of successful extensions: 37317 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37292 Number of HSP's gapped (non-prelim): 25 length of query: 293 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 271 effective length of database: 17,147,199,772 effective search space: 4646891138212 effective search space used: 4646891138212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
