ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9f15 |
|---|---|
| Clone Library Name | barley_pub |
>DPOD3_MOUSE (Q9EQ28) DNA polymerase delta subunit 3 (DNA polymerase delta| subunit p66) Length = 462 Score = 59.7 bits (143), Expect = 8e-09 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 6/113 (5%) Frame = +1 Query: 130 LPQIHALFSDQLRVISYKWLSRNFSVSSNDAKRLLQEFVNK-----HGTDHEVIYSVSGW 294 L I +DQ ++++YKWLS V N AK++L E+V + G V Y VSG Sbjct: 7 LENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYEYVERKRKENSGAQLHVTYLVSGS 66 Query: 295 L-KNNPENYCVKLTSGPNLEEARRTFKGSCSVQVYSIQACIPKDTAVLWNPEF 450 L +N + V + LE + + S+ VYSIQ + KD+ L+N ++ Sbjct: 67 LIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDY 119
>DPOD3_HUMAN (Q15054) DNA polymerase delta subunit 3 (DNA polymerase delta| subunit p66) Length = 466 Score = 58.5 bits (140), Expect = 2e-08 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 6/113 (5%) Frame = +1 Query: 130 LPQIHALFSDQLRVISYKWLSRNFSVSSNDAKRLLQEFVNK-----HGTDHEVIYSVSGW 294 L I +DQ ++++YKWLS V N AK++L ++V + G V Y VSG Sbjct: 7 LENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYDYVERKRKENSGAQLHVTYLVSGS 66 Query: 295 L-KNNPENYCVKLTSGPNLEEARRTFKGSCSVQVYSIQACIPKDTAVLWNPEF 450 L +N + V + LE + + S+ VYSIQ + KD+ L+N ++ Sbjct: 67 LIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDY 119
>Y2077_METMA (Q8PV94) UPF0278 protein MM2077| Length = 247 Score = 32.7 bits (73), Expect = 1.0 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = +1 Query: 232 LQEFVNKHGTDHEVIYSVSGWL-KNNPENYCVKLTS 336 + EF +++G D EV+ + WL K +P+ Y V +TS Sbjct: 60 MYEFASRNGCDREVVAKIDTWLVKKSPDRYRVDVTS 95
>NU5C_ADEHI (P51095) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) Length = 744 Score = 32.7 bits (73), Expect = 1.0 Identities = 23/63 (36%), Positives = 32/63 (50%) Frame = -3 Query: 599 TLFVGFGGIELTCFPVVVRLTKEFLTPQNLLSLKQFSSSNGWLKSSSACTNSGFQSTAVS 420 TLFVGF GI V + + ++LTP L K ++S W + C ++ F T S Sbjct: 559 TLFVGFLGIPFNQDGVDLDILSKWLTPSINLLHKNSNNSIDWYE---FCKDAVFSVTISS 615 Query: 419 FGI 411 FGI Sbjct: 616 FGI 618
>PPSA_PYRFU (P42850) Probable phosphoenolpyruvate synthase (EC 2.7.9.2)| (Pyruvate, water dikinase) (PEP synthase) Length = 817 Score = 31.6 bits (70), Expect = 2.3 Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 1/107 (0%) Frame = +1 Query: 175 SYKWLSRNFSVSSNDAKRLLQEFVNKHGTDHEVIYSVSGWLKNNP-ENYCVKLTSGPNLE 351 +YK+ N VS D KR+L E VNK GT EV+ + P +++ + + S +++ Sbjct: 47 AYKYFVENVKVSKEDVKRILGEKVNK-GTISEVLAQAPD--EPRPLQDWIMDIISKTDVD 103 Query: 352 EARRTFKGSCSVQVYSIQACIPKDTAVLWNPEFVQAEELFNQPFDEE 492 +++ + + +++ +P + A E QA + +Q F +E Sbjct: 104 DSKMLQENTEAIRTLIKSLDMPSEIA----EEIKQAYKELSQRFGQE 146
>NU5C_CARTI (Q32091) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) Length = 743 Score = 31.6 bits (70), Expect = 2.3 Identities = 21/63 (33%), Positives = 32/63 (50%) Frame = -3 Query: 599 TLFVGFGGIELTCFPVVVRLTKEFLTPQNLLSLKQFSSSNGWLKSSSACTNSGFQSTAVS 420 TLF+GF GI V + + ++LTP L K ++S W + C ++ F + S Sbjct: 558 TLFIGFLGIPFNQDGVNLDILSKWLTPSINLLHKNSNNSIDWYE---FCKDAVFSVSIAS 614 Query: 419 FGI 411 FGI Sbjct: 615 FGI 617
>NU5C_MUTAC (Q32551) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) Length = 744 Score = 31.2 bits (69), Expect = 3.0 Identities = 22/63 (34%), Positives = 32/63 (50%) Frame = -3 Query: 599 TLFVGFGGIELTCFPVVVRLTKEFLTPQNLLSLKQFSSSNGWLKSSSACTNSGFQSTAVS 420 TLFVGF GI V + + ++LTP L K ++S W + C ++ F + S Sbjct: 559 TLFVGFLGIPFNQDGVDLDILSKWLTPSINLLHKNSNNSIDWYE---FCKDAVFSVSISS 615 Query: 419 FGI 411 FGI Sbjct: 616 FGI 618
>NU5C_GERJA (P51100) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) Length = 744 Score = 31.2 bits (69), Expect = 3.0 Identities = 22/63 (34%), Positives = 32/63 (50%) Frame = -3 Query: 599 TLFVGFGGIELTCFPVVVRLTKEFLTPQNLLSLKQFSSSNGWLKSSSACTNSGFQSTAVS 420 TLFVGF GI V + + ++LTP L K ++S W + C ++ F + S Sbjct: 559 TLFVGFLGIPFNQDGVDLDILSKWLTPSINLLHKNSNNSIDWYE---FCKDAVFSVSISS 615 Query: 419 FGI 411 FGI Sbjct: 616 FGI 618
>NUOB_PECCC (O85274) NADH-quinone oxidoreductase chain B (EC 1.6.99.5) (NADH| dehydrogenase I, chain B) (NDH-1, chain B) Length = 224 Score = 30.4 bits (67), Expect = 5.2 Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 9/87 (10%) Frame = -3 Query: 674 GRSCCRTIEDCSFVALLGFGTAGAITLFVG-----FGGIELTCF----PVVVRLTKEFLT 522 G SCC SF A+ GA L F + TCF PV+ RL ++ L Sbjct: 64 GLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLE 123 Query: 521 PQNLLSLKQFSSSNGWLKSSSACTNSG 441 P+ W+ S AC NSG Sbjct: 124 PK-------------WVISMGACANSG 137
>GLPK2_STRCO (Q9RJM2) Glycerol kinase 2 (EC 2.7.1.30) (ATP:glycerol| 3-phosphotransferase 2) (Glycerokinase 2) (GK 2) Length = 507 Score = 30.4 bits (67), Expect = 5.2 Identities = 19/67 (28%), Positives = 33/67 (49%) Frame = +1 Query: 244 VNKHGTDHEVIYSVSGWLKNNPENYCVKLTSGPNLEEARRTFKGSCSVQVYSIQACIPKD 423 V KH +HE I SGW++++P + S ++ A R G + +I ++ Sbjct: 27 VAKHQLEHEQILPRSGWVEHDPVEIWERTNS--VMQNALRN-GGLSGTDLAAIGITNQRE 83 Query: 424 TAVLWNP 444 T V+W+P Sbjct: 84 TTVVWDP 90
>FABH_RICTY (Q68VX7) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase III) (Beta-ketoacyl-ACP synthase III) (KAS III) Length = 317 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/65 (26%), Positives = 32/65 (49%) Frame = +1 Query: 211 SNDAKRLLQEFVNKHGTDHEVIYSVSGWLKNNPENYCVKLTSGPNLEEARRTFKGSCSVQ 390 SND L+ + GTD+E++Y+ G N TSG + + ++ F+ + + Sbjct: 169 SNDESGLIDSNIFSSGTDYEILYTSGGTSMNG--------TSGKIVMQGQKLFRHAIAKM 220 Query: 391 VYSIQ 405 + SI+ Sbjct: 221 LQSIE 225
>ALGE4_AZOVI (Q44493) Poly(beta-D-mannuronate) C5 epimerase 4 (EC 5.1.3.-)| (Mannuronan epimerase 4) Length = 553 Score = 30.0 bits (66), Expect = 6.7 Identities = 21/101 (20%), Positives = 40/101 (39%) Frame = +1 Query: 187 LSRNFSVSSNDAKRLLQEFVNKHGTDHEVIYSVSGWLKNNPENYCVKLTSGPNLEEARRT 366 ++ N + + + ++Q + ++ + N E +K+TS L+ A Sbjct: 209 MTNNVAYGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIH 268 Query: 367 FKGSCSVQVYSIQACIPKDTAVLWNPEFVQAEELFNQPFDE 489 GS V+VY Q D + N + E+ Q FD+ Sbjct: 269 GNGSSGVRVYGAQDVQILDNQIHDNAQAAAVPEVLLQSFDD 309
>ELMO2_MOUSE (Q8BHL5) Engulfment and cell motility protein 2 (CED-12 homolog A)| Length = 732 Score = 29.6 bits (65), Expect = 8.8 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Frame = +1 Query: 172 ISYKWLSRNFSVSSNDAKRLLQEFVNKHGTDHEVIYSVSGWLKNNPENYCVKLTSGPNL- 348 ++ +W N + D KR L + + GW NPE Y ++ GP L Sbjct: 10 VAIEWPGANAQLLEIDQKRPLASIIKE---------VCDGWSLPNPEYYTLRYADGPQLY 60 Query: 349 --EEARRTFKGSCSVQV 393 E+ R K +Q+ Sbjct: 61 VTEQTRNDIKNGTILQL 77
>CRSP2_HUMAN (O60244) CRSP complex subunit 2 (Cofactor required for Sp1| transcriptional activation subunit 2) (Transcriptional coactivator CRSP150) (Vitamin D3 receptor-interacting protein complex 150 kDa component) (DRIP150) (Thyroid hormone receptor-ass Length = 1454 Score = 29.6 bits (65), Expect = 8.8 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 568 SSMPPKPTNSVIAPAVPKPSSATKEQSSIVRQQD 669 +S+PP+ S+I P + +S T +Q+ I RQQ+ Sbjct: 1373 TSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQN 1406
>RNR_BUCAP (Q8K917) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein| homolog) Length = 726 Score = 29.6 bits (65), Expect = 8.8 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Frame = +1 Query: 136 QIHALFSDQLRVISYKWLSRNFSVSSNDAKRLLQEFVNKHGTDHEVIYSVSGWLKNNPEN 315 QI L +IS K L + FS++S + K+ L+ + D ++IY+ PEN Sbjct: 23 QILFLLKTDKDLISQKKLEKKFSINSQEQKKALRRRLRAMERDGQIIYT-RNRCYITPEN 81 Query: 316 YCVKLTSGPNLEE-------ARRTFKGSCSVQVYSIQACIPKD 423 +K+ +G + TFK + + ++ CI D Sbjct: 82 --LKIVTGKVIGHRDGYGFLRTETFKDDLWLSIEQMKLCIHGD 122
>FABH_RICPR (Q9ZCH1) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase III) (Beta-ketoacyl-ACP synthase III) (KAS III) Length = 317 Score = 29.6 bits (65), Expect = 8.8 Identities = 17/65 (26%), Positives = 31/65 (47%) Frame = +1 Query: 211 SNDAKRLLQEFVNKHGTDHEVIYSVSGWLKNNPENYCVKLTSGPNLEEARRTFKGSCSVQ 390 SND L+ + GTD+E++Y+ G N TSG + + ++ F+ + Sbjct: 169 SNDDSGLIDSNIFSSGTDYEILYTSGGTSMNG--------TSGKIVMQGQKLFRHAIEKM 220 Query: 391 VYSIQ 405 + SI+ Sbjct: 221 LQSIE 225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.131 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,008,608 Number of Sequences: 219361 Number of extensions: 1729409 Number of successful extensions: 5682 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5399 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5677 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
