ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags9f10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB055152.1| Triticum aestivum mrpl11 mRNA for mitochondrial ribosomal protein L11, complete cds Length = 956 Score = 333 bits (168), Expect = 1e-88 Identities = 222/241 (92%) Strand = Plus / Plus Query: 1 cgatgcaagtcactctgaccgcctacaaggacagcaccttcgagtttgtggncaagtcgc 60 ||||||||||||| ||||| ||||||||||||||||| || |||||||| | |||||||| Sbjct: 333 cgatgcaagtcacgctgactgcctacaaggacagcacttttgagtttgtagtcaagtcgc 392 Query: 61 catcggtctcatggttcctcaagaaagcggcgggcatngagagcgcgagcagccgtccgg 120 | ||||||||||||||||||||||||||||||||| | |||| || |||||||| || | Sbjct: 393 cctcggtctcatggttcctcaagaaagcggcgggcgtcgagacggcaagcagccggccag 452 Query: 121 gccacaacatggtgacgtccctctcgctccgccatgtctatgagatcgcaaagctgaagc 180 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 453 gccacaacatggtgacgtccctctcgctccgccatgtctacgagatcgcgaagctgaagc 512 Query: 181 agtccgacccgttctgcaagcacatgtccctcgaggccctgtgcaagtccatnatcggca 240 |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 513 agtcagacccgttctgcaagcacatgtcgctcgaggccctgtgcaagtccatcatcggca 572 Query: 241 c 241 | Sbjct: 573 c 573
>ref|NM_196922.1| Oryza sativa (japonica cultivar-group) putative ribosomal protein L11 (OSJNBa0006L06.28), mRNA Length = 468 Score = 135 bits (68), Expect = 7e-29 Identities = 182/221 (82%) Strand = Plus / Plus Query: 21 gcctacaaggacagcaccttcgagtttgtggncaagtcgccatcggtctcatggttcctc 80 ||||||||||||||||| ||||||||||| | |||||| ||||| ||||||||||||||| Sbjct: 208 gcctacaaggacagcacattcgagtttgtagtcaagtcaccatctgtctcatggttcctc 267 Query: 81 aagaaagcggcgggcatngagagcgcgagcagccgtccgggccacaacatggtgacgtcc 140 ||||| || || || || |||| || ||| ||||||| || |||| | ||| | ||| Sbjct: 268 aagaaggccgccgggattgagacagccagcggccgtccagggcacactgtagtgtcatcc 327 Query: 141 ctctcgctccgccatgtctatgagatcgcaaagctgaagcagtccgacccgttctgcaag 200 || || || ||||||||||| |||||||| || ||||||| || || || | ||||||| Sbjct: 328 ctttcacttcgccatgtctacgagatcgcgaaattgaagcaatctgatccctactgcaag 387 Query: 201 cacatgtccctcgaggccctgtgcaagtccatnatcggcac 241 |||||||| |||||||| ||||||||||| || || ||||| Sbjct: 388 cacatgtcactcgaggcgctgtgcaagtcaatcattggcac 428
>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete sequence Length = 162339 Score = 135 bits (68), Expect = 7e-29 Identities = 182/221 (82%) Strand = Plus / Minus Query: 21 gcctacaaggacagcaccttcgagtttgtggncaagtcgccatcggtctcatggttcctc 80 ||||||||||||||||| ||||||||||| | |||||| ||||| ||||||||||||||| Sbjct: 31607 gcctacaaggacagcacattcgagtttgtagtcaagtcaccatctgtctcatggttcctc 31548 Query: 81 aagaaagcggcgggcatngagagcgcgagcagccgtccgggccacaacatggtgacgtcc 140 ||||| || || || || |||| || ||| ||||||| || |||| | ||| | ||| Sbjct: 31547 aagaaggccgccgggattgagacagccagcggccgtccagggcacactgtagtgtcatcc 31488 Query: 141 ctctcgctccgccatgtctatgagatcgcaaagctgaagcagtccgacccgttctgcaag 200 || || || ||||||||||| |||||||| || ||||||| || || || | ||||||| Sbjct: 31487 ctttcacttcgccatgtctacgagatcgcgaaattgaagcaatctgatccctactgcaag 31428 Query: 201 cacatgtccctcgaggccctgtgcaagtccatnatcggcac 241 |||||||| |||||||| ||||||||||| || || ||||| Sbjct: 31427 cacatgtcactcgaggcgctgtgcaagtcaatcattggcac 31387
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 135 bits (68), Expect = 7e-29 Identities = 182/221 (82%) Strand = Plus / Minus Query: 21 gcctacaaggacagcaccttcgagtttgtggncaagtcgccatcggtctcatggttcctc 80 ||||||||||||||||| ||||||||||| | |||||| ||||| ||||||||||||||| Sbjct: 16687090 gcctacaaggacagcacattcgagtttgtagtcaagtcaccatctgtctcatggttcctc 16687031 Query: 81 aagaaagcggcgggcatngagagcgcgagcagccgtccgggccacaacatggtgacgtcc 140 ||||| || || || || |||| || ||| ||||||| || |||| | ||| | ||| Sbjct: 16687030 aagaaggccgccgggattgagacagccagcggccgtccagggcacactgtagtgtcatcc 16686971 Query: 141 ctctcgctccgccatgtctatgagatcgcaaagctgaagcagtccgacccgttctgcaag 200 || || || ||||||||||| |||||||| || ||||||| || || || | ||||||| Sbjct: 16686970 ctttcacttcgccatgtctacgagatcgcgaaattgaagcaatctgatccctactgcaag 16686911 Query: 201 cacatgtccctcgaggccctgtgcaagtccatnatcggcac 241 |||||||| |||||||| ||||||||||| || || ||||| Sbjct: 16686910 cacatgtcactcgaggcgctgtgcaagtcaatcattggcac 16686870
>dbj|AK063749.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-G08, full insert sequence Length = 849 Score = 135 bits (68), Expect = 7e-29 Identities = 182/221 (82%) Strand = Plus / Plus Query: 21 gcctacaaggacagcaccttcgagtttgtggncaagtcgccatcggtctcatggttcctc 80 ||||||||||||||||| ||||||||||| | |||||| ||||| ||||||||||||||| Sbjct: 312 gcctacaaggacagcacattcgagtttgtagtcaagtcaccatctgtctcatggttcctc 371 Query: 81 aagaaagcggcgggcatngagagcgcgagcagccgtccgggccacaacatggtgacgtcc 140 ||||| || || || || |||| || ||| ||||||| || |||| | ||| | ||| Sbjct: 372 aagaaggccgccgggattgagacagccagcggccgtccagggcacactgtagtgtcatcc 431 Query: 141 ctctcgctccgccatgtctatgagatcgcaaagctgaagcagtccgacccgttctgcaag 200 || || || ||||||||||| |||||||| || ||||||| || || || | ||||||| Sbjct: 432 ctttcacttcgccatgtctacgagatcgcgaaattgaagcaatctgatccctactgcaag 491 Query: 201 cacatgtccctcgaggccctgtgcaagtccatnatcggcac 241 |||||||| |||||||| ||||||||||| || || ||||| Sbjct: 492 cacatgtcactcgaggcgctgtgcaagtcaatcattggcac 532
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 135 bits (68), Expect = 7e-29 Identities = 182/221 (82%) Strand = Plus / Minus Query: 21 gcctacaaggacagcaccttcgagtttgtggncaagtcgccatcggtctcatggttcctc 80 ||||||||||||||||| ||||||||||| | |||||| ||||| ||||||||||||||| Sbjct: 16696130 gcctacaaggacagcacattcgagtttgtagtcaagtcaccatctgtctcatggttcctc 16696071 Query: 81 aagaaagcggcgggcatngagagcgcgagcagccgtccgggccacaacatggtgacgtcc 140 ||||| || || || || |||| || ||| ||||||| || |||| | ||| | ||| Sbjct: 16696070 aagaaggccgccgggattgagacagccagcggccgtccagggcacactgtagtgtcatcc 16696011 Query: 141 ctctcgctccgccatgtctatgagatcgcaaagctgaagcagtccgacccgttctgcaag 200 || || || ||||||||||| |||||||| || ||||||| || || || | ||||||| Sbjct: 16696010 ctttcacttcgccatgtctacgagatcgcgaaattgaagcaatctgatccctactgcaag 16695951 Query: 201 cacatgtccctcgaggccctgtgcaagtccatnatcggcac 241 |||||||| |||||||| ||||||||||| || || ||||| Sbjct: 16695950 cacatgtcactcgaggcgctgtgcaagtcaatcattggcac 16695910
>gb|AF367015.1| Streptococcus pyogenes serum opacity factor VT37.1 gene, complete cds Length = 3048 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 cactctgaccgcctacaagga 31 ||||||||||||||||||||| Sbjct: 2515 cactctgaccgcctacaagga 2495
>gb|AF367011.1| Streptococcus pyogenes serum opacity factor VT3.2 gene, complete cds Length = 3069 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 cactctgaccgcctacaagga 31 ||||||||||||||||||||| Sbjct: 2539 cactctgaccgcctacaagga 2519
>gb|AF181974.1|AF181974 Streptococcus pyogenes serum opacity factor (sof63) gene, complete cds Length = 3650 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 cactctgaccgcctacaagga 31 ||||||||||||||||||||| Sbjct: 2926 cactctgaccgcctacaagga 2906
>gb|AF191035.1|AF191035 Streptococcus pyogenes strain SS1457 serum opacity factor precursor (sof1207) gene, partial cds Length = 2645 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 cactctgaccgcctacaagga 31 ||||||||||||||||||||| Sbjct: 2509 cactctgaccgcctacaagga 2489
>gb|AF177977.1|AF177977 Streptococcus pyogenes serum opacity factor precursor (sof1482) gene, partial cds Length = 2564 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 cactctgaccgcctacaagga 31 ||||||||||||||||||||| Sbjct: 2446 cactctgaccgcctacaagga 2426
>gb|AF139752.2|AF139752 Streptococcus pyogenes serum opacity factor precursor (sof3875) gene, partial cds Length = 2618 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 cactctgaccgcctacaagga 31 ||||||||||||||||||||| Sbjct: 2500 cactctgaccgcctacaagga 2480
>gb|AF174430.1|AF174430 Streptococcus pyogenes serum opacity factor precursor (sof9) gene, partial cds Length = 2768 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 cactctgaccgcctacaagga 31 ||||||||||||||||||||| Sbjct: 2551 cactctgaccgcctacaagga 2531
>gb|AF138798.3|AF138798 Streptococcus pyogenes serum opacity factor precursor (sof44) gene, partial cds Length = 2621 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 cactctgaccgcctacaagga 31 ||||||||||||||||||||| Sbjct: 2503 cactctgaccgcctacaagga 2483
>gb|AF138804.2|AF138804 Streptococcus pyogenes serum opacity factor precursor (sof61) gene, partial cds Length = 2597 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 cactctgaccgcctacaagga 31 ||||||||||||||||||||| Sbjct: 2479 cactctgaccgcctacaagga 2459
>gb|AY120873.1| Streptococcus pyogenes fibronectin-binding protein precursor (sfbX) gene, sfbX-92 allele, partial cds Length = 1881 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 tcactctgaccgcctacaaggaca 33 ||||| |||||||||||||||||| Sbjct: 1565 tcactttgaccgcctacaaggaca 1542 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,488,928 Number of Sequences: 3902068 Number of extensions: 1488928 Number of successful extensions: 17573 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17535 Number of HSP's gapped (non-prelim): 33 length of query: 241 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 219 effective length of database: 17,147,199,772 effective search space: 3755236750068 effective search space used: 3755236750068 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
