Clone Information

BLAST Search Result

Clone Name	bags9f06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	Y1875_PYRHO (O59545) Hypothetical UPF0004 protein PH1875	84	2e-16
2	Y1729_PYRAB (Q9UXX9) Hypothetical UPF0004 protein PYRAB17290	83	5e-16
3	Y269_HELPY (P56131) Hypothetical UPF0004 protein HP0269	67	4e-11
4	Y082_SYNY3 (Q55803) Hypothetical UPF0004 protein slr0082	67	4e-11
5	Y269_HELPJ (Q9ZMG6) Hypothetical UPF0004 protein jhp_0254	66	5e-11
6	Y826_METTH (O26914) Hypothetical UPF0004 protein MTH826	65	1e-10
7	Y996_SYNY3 (P73127) Hypothetical UPF0004 protein sll0996	64	2e-10
8	Y867_METJA (Q58277) Hypothetical UPF0004 protein MJ0867	64	3e-10
9	Y830_THEMA (Q9WZT7) Hypothetical UPF0004 protein TM0830	60	5e-09
10	Y284_AQUAE (O66638) Hypothetical UPF0004 protein aq_284	60	5e-09
11	Y019_HAEIN (Q57163) Hypothetical UPF0004 protein HI0019	58	2e-08
12	Y16R_MYCIO (Q49573) Hypothetical UPF0004 protein in 16S RNA 5're...	57	2e-08
13	Y1001_PASMU (Q9L699) Hypothetical UPF0004 protein PM1001	57	3e-08
14	Y426_BUCAP (Q8K9C2) Hypothetical UPF0004 protein BUsg426	57	4e-08
15	YMCB_BACSU (O31778) Hypothetical UPF0004 protein ymcB	56	5e-08
16	Y441_BUCAI (P57516) Hypothetical UPF0004 protein BU441	55	1e-07
17	YLEA_ECOLI (P0AEI1) Hypothetical UPF0004 protein yleA	54	2e-07
18	YLEA_ECOL6 (P0AEI2) Hypothetical UPF0004 protein yleA	54	2e-07
19	YLEA_ECO57 (P0AEI3) Hypothetical UPF0004 protein yleA	54	2e-07
20	Y285_HELPY (P56130) Hypothetical UPF0004 protein HP0285	54	3e-07
21	Y2752_MYCBO (P67086) Hypothetical UPF0004 protein Mb2752c	53	6e-07
22	Y2733_MYCTU (P67085) Hypothetical UPF0004 protein Rv2733c/MT2803	53	6e-07
23	Y392_BUCBP (Q89AC2) Hypothetical UPF0004 protein bbp_392	52	1e-06
24	Y285_HELPJ (Q9ZMF0) Hypothetical UPF0004 protein jhp_0270	52	1e-06
25	Y808_RICPR (Q9ZCE8) Hypothetical UPF0004 protein RP808	52	1e-06
26	Y849_AQUAE (O67016) Hypothetical UPF0004 protein aq_849	52	1e-06
27	Y474_AQUAE (O66772) Hypothetical UPF0004 protein aq_474	51	2e-06
28	Y989_MYCLE (Q49842) Hypothetical UPF0004 protein ML0989	48	1e-05
29	YQEV_BACSU (P54462) Hypothetical UPF0004 protein yqeV	45	2e-04
30	Y3980_PSEAE (Q51470) Hypothetical UPF0004 protein PA3980	44	4e-04
31	CK5P1_RAT (Q9JLH6) CDK5 regulatory subunit-associated protein 1 ...	43	6e-04
32	YLIG_ECOLI (P0AEI4) Hypothetical UPF0004 protein yliG	43	6e-04
33	YLIG_ECO57 (P0AEI5) Hypothetical UPF0004 protein yliG	43	6e-04
34	Y1571_PASMU (Q9CKN9) Hypothetical UPF0004 protein PM1571	43	6e-04
35	CK5P1_CAEEL (Q09316) CDK5RAP1-like protein	43	6e-04
36	CK5P1_MOUSE (Q8BTW8) CDK5 regulatory subunit-associated protein ...	43	6e-04
37	CK5P1_ARATH (Q8H0V1) CDK5RAP1-like protein	42	0.001
38	CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein	40	0.004
39	CK5P1_HUMAN (Q96SZ6) CDK5 regulatory subunit-associated protein ...	40	0.004
40	Y754_TREPA (O83735) Hypothetical UPF0004 protein TP0754	38	0.019
41	Y477_CHLPN (Q9Z874) Hypothetical UPF0004 protein CPn_0477/CP0277...	37	0.033
42	Y1247_ARCFU (O29021) Hypothetical UPF0004 protein AF1247	33	0.48
43	CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor	32	1.1
44	TRPA_HAEIN (P43759) Tryptophan synthase alpha chain (EC 4.2.1.20)	30	4.0
45	CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor	30	4.0
46	Y269_TREPA (O83293) Hypothetical UPF0004 protein TP0269	30	5.3
47	CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor	30	5.3
48	CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor	30	5.3
49	MUG2_MOUSE (P28666) Murinoglobulin-2 precursor (MuG2)	29	6.9
50	MES4_CAEEL (Q9NH52) Probable histone methyltransferase mes-4 (Ma...	29	6.9
51	RDC1_HUMAN (P25106) G-protein coupled receptor RDC1 homolog (Che...	29	6.9
52	CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor	29	6.9
53	Y421_HAEIN (P43996) Hypothetical protein HI0421	29	6.9
54	KCNN1_HUMAN (Q92952) Small conductance calcium-activated potassi...	29	9.0
55	THIE2_STRR6 (P66921) Probable thiamine-phosphate pyrophosphoryla...	29	9.0
56	THIE2_STRPN (P66920) Probable thiamine-phosphate pyrophosphoryla...	29	9.0
57	CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor	29	9.0
58	ANKR5_MOUSE (Q9D2J7) Ankyrin repeat domain-containing protein 5	29	9.0

>Y1875_PYRHO (O59545) Hypothetical UPF0004 protein PH1875|
          Length = 425

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 35/110 (31%), Positives = 70/110 (63%)
 Frame = +3

Query: 192 IYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLISK 371
           +Y++ +GC+ N++D E M+  L   G+ I E PE +++ ++N+C VK+P++  ++  I +
Sbjct: 4   VYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIRE 63

Query: 372 CKTANKPLVVAGCVPQGSRDLKELEGISIIGVQQIDRVVEVVEETLKGHE 521
                K ++V GC+P  + D+ +    +I+GV+ IDR+V+ VE  ++G +
Sbjct: 64  LLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEK 113

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>Y1729_PYRAB (Q9UXX9) Hypothetical UPF0004 protein PYRAB17290|
          Length = 425

 Score = 82.8 bits (203), Expect = 5e-16
 Identities = 34/110 (30%), Positives = 69/110 (62%)
 Frame = +3

Query: 192 IYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLISK 371
           IY++ +GC+ N++D E M+  L   G+ I  +P+  ++ ++N+C VK+P++  ++  I +
Sbjct: 4   IYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKE 63

Query: 372 CKTANKPLVVAGCVPQGSRDLKELEGISIIGVQQIDRVVEVVEETLKGHE 521
              + K ++V GC+P  + D+ +     I+GV+ IDR+++ VE  L+G +
Sbjct: 64  LLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEK 113

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>Y269_HELPY (P56131) Hypothetical UPF0004 protein HP0269|
          Length = 437

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
 Frame = +3

Query: 192 IYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVK-NPSQSAMSTL-- 362
           +Y++T GC+ N  DSE++  +LS   Y  T +P+ ADL LINTC+V+  P +   S +  
Sbjct: 3   VYIETMGCAMNSRDSEHLLSELSKLDYKETNDPKTADLILINTCSVREKPERKLFSEIGQ 62

Query: 363 ISKCKTANKPLVVAGCVP--QGSRDLKELEGIS-IIGVQQIDRVVEVVEE 503
            +K K  N  + V GC     G+  LK+   +S ++G + + ++ +V+ +
Sbjct: 63  FAKIKKPNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHK 112

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>Y082_SYNY3 (Q55803) Hypothetical UPF0004 protein slr0082|
          Length = 443

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 36/115 (31%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
 Frame = +3

Query: 183 TQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCT-VKNPSQSAMST 359
           T TI +   GC  N+ DSE+M G L   GY +    E AD  ++NTC+ +++  Q ++ T
Sbjct: 4   TPTIAINHLGCEKNRIDSEHMLGLLVEAGYQVDANEELADYVIVNTCSFIQDARQESVRT 63

Query: 360 LISKCKTANKPLVVAGCVPQGSRD--LKEL-EGISIIGVQQIDRVVEVVEETLKG 515
           L+   + A K +V++GC+ Q  ++  L+E+ E ++++G      +V+++  T +G
Sbjct: 64  LVELAE-AKKKIVISGCLAQHFQEQLLEEIPEAVAVVGTGDYQNIVDIIRRTEQG 117

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>Y269_HELPJ (Q9ZMG6) Hypothetical UPF0004 protein jhp_0254|
          Length = 437

 Score = 66.2 bits (160), Expect = 5e-11
 Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
 Frame = +3

Query: 192 IYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVK-NPSQSAMSTL-- 362
           +Y++T GC+ N  DSE++  +LS   Y  T +P+ ADL LINTC+V+  P +   S +  
Sbjct: 3   VYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIGQ 62

Query: 363 ISKCKTANKPLVVAGCVP--QGSRDLKELEGIS-IIGVQQIDRVVEVVEE 503
            +K K  N  + V GC     G+  LK+   +S ++G + + ++ +V+ +
Sbjct: 63  FAKIKKPNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHK 112

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>Y826_METTH (O26914) Hypothetical UPF0004 protein MTH826|
          Length = 424

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
 Frame = +3

Query: 192 IYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLISK 371
           +Y++TFGC+ NQ+DSE M+G L   G A+    + AD+ +INTC VK+P++  +   I K
Sbjct: 6   VYIETFGCTFNQADSEIMAGVLREEG-AVLTGIDDADVIIINTCYVKHPTEHKVINRIKK 64

Query: 372 CKTA--NKPLVVAGCVPQGSRDLKELEGI----SIIGVQQIDRVVEVVEETLKG 515
            +     K LVVAGC+ +   D  +LE I    S +G  Q+ R  + V     G
Sbjct: 65  IQETYPEKGLVVAGCMVE--IDPSKLEAISGDASWLGPHQLRRAPQAVRAASNG 116

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>Y996_SYNY3 (P73127) Hypothetical UPF0004 protein sll0996|
          Length = 451

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
 Frame = +3

Query: 195 YVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVK-NPSQSAMSTLISK 371
           ++ TFGC  N++DSE M+G L   G   T++P  ADL L NTC+++ N  Q   S L  +
Sbjct: 9   HIITFGCQMNKADSERMAGILENLGMTYTDDPNQADLVLYNTCSIRDNAEQKVYSYLGRQ 68

Query: 372 CK----TANKPLVVAGCVPQ--GSRDLKELEGISII-GVQQIDRVVEVVEETLKGHE 521
            K         LVVAGCV Q  G + L+ +  + ++ G Q  +R+ +++E+   G +
Sbjct: 69  AKRKQVEPELTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVWAGSQ 125

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>Y867_METJA (Q58277) Hypothetical UPF0004 protein MJ0867|
          Length = 427

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 31/109 (28%), Positives = 63/109 (57%)
 Frame = +3

Query: 192 IYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLISK 371
           +YV+ +GC  N +D+E +   L   G+ +    E AD+ +INTC V+  +++ M   I++
Sbjct: 14  VYVEGYGCVLNTADTEIIKNSLKKHGFEVVNNLEEADIAIINTCVVRLETENRMIYRINE 73

Query: 372 CKTANKPLVVAGCVPQGSRDLKELEGISIIGVQQIDRVVEVVEETLKGH 518
            K   K +VVAGC+P+  ++  +++G   I  ++  +  E+++  ++ H
Sbjct: 74  LKNLGKEVVVAGCLPKALKN--KVKGFLHIYPREAHKAGEILKNYVEKH 120

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>Y830_THEMA (Q9WZT7) Hypothetical UPF0004 protein TM0830|
          Length = 434

 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
 Frame = +3

Query: 186 QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEG-ADLWLINTCTVKNPSQSAMSTL 362
           +T+ ++TFGC  NQ +SEYM+ QL   GY +   P+G A  +++N+C V    +  +  L
Sbjct: 2   KTVRIETFGCKVNQYESEYMAEQLEKAGYVVL--PDGNAAYYIVNSCAVTKEVEKKVKRL 59

Query: 363 ISKCKTANK--PLVVAGCVPQGSRD-LKELEGISIIGVQQIDRVVE 491
           I   +  NK   +++ GC  Q S D  K L    ++G+ +   +V+
Sbjct: 60  IKSIRNRNKNAKIILTGCFAQLSPDEAKNLPVDMVLGIDEKKHIVD 105

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>Y284_AQUAE (O66638) Hypothetical UPF0004 protein aq_284|
          Length = 440

 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
 Frame = +3

Query: 183 TQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVK-NPSQSAMST 359
           ++  ++KTFGC  N +DSE + G L   GY  T+  E ADL ++NTCT++  P Q  +S 
Sbjct: 2   SKKFFIKTFGCQMNFNDSERIRGLLKTIGYEQTDNWEEADLIILNTCTIREKPDQKVLSH 61

Query: 360 L--ISKCKTANKP--LVVAGCVPQ 419
           L    K K  N    + VAGC+ Q
Sbjct: 62  LGEYKKIKEKNPKALIAVAGCLAQ 85

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>Y019_HAEIN (Q57163) Hypothetical UPF0004 protein HI0019|
          Length = 474

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
 Frame = +3

Query: 183 TQTIYVKTFGCSHNQSDSEYMSGQL-SAFGYAITEEPEGADLWLINTCTVKNPSQSAMST 359
           TQ +++KT+GC  N+ DS  M+  L S  G  +TE PE AD+ L+NTC+++  +Q  +  
Sbjct: 2   TQKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFH 61

Query: 360 LISKCK-----TANKPLVVAGCV--PQGSRDLKELEGISII-GVQQIDRVVEVVEETLKG 515
            + + K       N  + V GCV   +G         + II G Q + R+ E++ +   G
Sbjct: 62  QLGRWKELKKNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQIRGG 121

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>Y16R_MYCIO (Q49573) Hypothetical UPF0004 protein in 16S RNA 5'region|
          Length = 438

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
 Frame = +3

Query: 189 TIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLIS 368
           T  + T GC  N  +S  +   L   G         AD+++INTCTV N + +     I 
Sbjct: 9   TFAIHTLGCKVNLFESNSIKNDLIMNGLVEVPFDSKADVYIINTCTVTNKADAKSRLYIK 68

Query: 369 KCKTANKP--LVVAGCVPQGSRDLKELEGISI-IGVQQIDRVVEVVEETLKGHE 521
           +    NK   ++VAGC+ Q ++DL +   ISI IG +  + V +++ E LK  E
Sbjct: 69  RAHVQNKDAIIIVAGCMSQVNKDLMDKLKISIQIGNKYKNSVFDLINEYLKKRE 122

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>Y1001_PASMU (Q9L699) Hypothetical UPF0004 protein PM1001|
          Length = 474

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
 Frame = +3

Query: 183 TQTIYVKTFGCSHNQSDSEYMSGQL-SAFGYAITEEPEGADLWLINTCTVKNPSQSAMST 359
           TQ +++KT+GC  N+ DS  M+  L S  G  +TE PE AD+ L+NTC+++  +Q  +  
Sbjct: 2   TQKLHIKTWGCQMNEYDSSKMADLLNSTHGLELTEIPEEADVLLLNTCSIREKAQEKVFH 61

Query: 360 LISKCKTANK-----PLVVAGCV--PQGSRDLKELEGISII-GVQQIDRVVEVVEETLKG 515
            + + K   K      + V GCV   +G         + II G Q + R+ E++ +   G
Sbjct: 62  QLGRWKELKKHKPGLVIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMINQIRGG 121

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>Y426_BUCAP (Q8K9C2) Hypothetical UPF0004 protein BUsg426|
          Length = 439

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 9/116 (7%)
 Frame = +3

Query: 192 IYVKTFGCSHNQSDSEYMSGQLSAFG-YAITEEPEGADLWLINTCTVKNPSQSAMSTLIS 368
           IY+KT+GC  N+ DS  ++  L   G Y IT+E E AD+ ++NTC+++  +Q  +   + 
Sbjct: 4   IYIKTWGCQMNEYDSSMITVFLEKTGRYLITKEVEKADILILNTCSIREKAQEKVFHQLG 63

Query: 369 KCKTA--NKP---LVVAGCV--PQGSRDLKELEGISII-GVQQIDRVVEVVEETLK 512
           + K     KP   + V GCV   +G    K    + I+ G Q + ++ +++++  K
Sbjct: 64  RWKKLKNKKPDVIIAVGGCVATQEGKEIFKRANYVDIVFGTQTLHKLAQMIDKVEK 119

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>YMCB_BACSU (O31778) Hypothetical UPF0004 protein ymcB|
          Length = 509

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
 Frame = +3

Query: 195 YVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLISKC 374
           Y++T+GC  N+ D+E M+G   A GY  T   + A++ L+NTC ++  +++ +   +   
Sbjct: 69  YIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGHL 128

Query: 375 KTANKP-----LVVAGCVPQG----SRDLKELEGISII-GVQQIDRVVEVVEETLKGHE 521
           K   K      L V GC+ Q     +R LK+   + +I G   I R+ E++ E     E
Sbjct: 129 KALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187

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>Y441_BUCAI (P57516) Hypothetical UPF0004 protein BU441|
          Length = 439

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
 Frame = +3

Query: 192 IYVKTFGCSHNQSDSEYMSGQLSAFG-YAITEEPEGADLWLINTCTVKNPSQSAMSTLIS 368
           IY+KT+GC  N+ DS  +   L     Y++T+  E AD+ ++NTC+++  +Q  +   + 
Sbjct: 4   IYIKTWGCQMNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFHQLG 63

Query: 369 KCKTA--NKP---LVVAGCV--PQGSRDLKELEGISII-GVQQIDRVVEVVEETLK 512
           + K    N P   + V GCV   +G    K    + II G Q + R+ ++++E  K
Sbjct: 64  RWKKIKNNNPKVIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEVEK 119

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>YLEA_ECOLI (P0AEI1) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
 Frame = +3

Query: 183 TQTIYVKTFGCSHNQSDSEYMSGQLSA-FGYAITEEPEGADLWLINTCTVKNPSQSAMST 359
           T+ +++KT+GC  N+ DS  M+  L A  GY +T+  E AD+ L+NTC+++  +Q  +  
Sbjct: 2   TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 61

Query: 360 LISK---CKTANKPLV--VAGCV--PQGSRDLKELEGISII-GVQQIDRVVEVV 497
            + +    K  N  L+  V GCV   +G    +    + II G Q + R+ E++
Sbjct: 62  QLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMI 115

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>YLEA_ECOL6 (P0AEI2) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
 Frame = +3

Query: 183 TQTIYVKTFGCSHNQSDSEYMSGQLSA-FGYAITEEPEGADLWLINTCTVKNPSQSAMST 359
           T+ +++KT+GC  N+ DS  M+  L A  GY +T+  E AD+ L+NTC+++  +Q  +  
Sbjct: 2   TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 61

Query: 360 LISK---CKTANKPLV--VAGCV--PQGSRDLKELEGISII-GVQQIDRVVEVV 497
            + +    K  N  L+  V GCV   +G    +    + II G Q + R+ E++
Sbjct: 62  QLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMI 115

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>YLEA_ECO57 (P0AEI3) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
 Frame = +3

Query: 183 TQTIYVKTFGCSHNQSDSEYMSGQLSA-FGYAITEEPEGADLWLINTCTVKNPSQSAMST 359
           T+ +++KT+GC  N+ DS  M+  L A  GY +T+  E AD+ L+NTC+++  +Q  +  
Sbjct: 2   TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 61

Query: 360 LISK---CKTANKPLV--VAGCV--PQGSRDLKELEGISII-GVQQIDRVVEVV 497
            + +    K  N  L+  V GCV   +G    +    + II G Q + R+ E++
Sbjct: 62  QLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMI 115

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>Y285_HELPY (P56130) Hypothetical UPF0004 protein HP0285|
          Length = 418

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 28/73 (38%), Positives = 42/73 (57%)
 Frame = +3

Query: 192 IYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLISK 371
           +Y KTFGC  N  D++ MS  L  F  + T E + AD+ +IN+CTV N + SA+ +   K
Sbjct: 4   VYFKTFGCRTNLFDTQVMSENLKDF--STTLEEQEADIIIINSCTVTNGADSAVRSYAKK 61

Query: 372 CKTANKPLVVAGC 410
               +K ++  GC
Sbjct: 62  MARLDKEVLFTGC 74

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>Y2752_MYCBO (P67086) Hypothetical UPF0004 protein Mb2752c|
          Length = 512

 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
 Frame = +3

Query: 162 PDARIPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPS 341
           P  R    +T  V+T+GC  N  DSE ++G L A GY    +   AD+ + NTC V+  +
Sbjct: 17  PPVRRAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENA 76

Query: 342 QSAMSTLISKC---KTANKPLVVA--GCVPQGSRD 431
            + +   +S     K AN  + +A  GC+ Q  RD
Sbjct: 77  DNRLYGNLSHLAPRKRANPDMQIAVGGCLAQKDRD 111

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>Y2733_MYCTU (P67085) Hypothetical UPF0004 protein Rv2733c/MT2803|
          Length = 512

 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
 Frame = +3

Query: 162 PDARIPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPS 341
           P  R    +T  V+T+GC  N  DSE ++G L A GY    +   AD+ + NTC V+  +
Sbjct: 17  PPVRRAPARTYQVRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENA 76

Query: 342 QSAMSTLISKC---KTANKPLVVA--GCVPQGSRD 431
            + +   +S     K AN  + +A  GC+ Q  RD
Sbjct: 77  DNRLYGNLSHLAPRKRANPDMQIAVGGCLAQKDRD 111

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>Y392_BUCBP (Q89AC2) Hypothetical UPF0004 protein bbp_392|
          Length = 445

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
 Frame = +3

Query: 192 IYVKTFGCSHNQSDSEYMSGQLSA-FGYAITEEPEGADLWLINTCTVKNPSQSAMSTLIS 368
           IY+KT+GC  N+ DS  ++  L    GY  T++P+ A++ ++NTC+++  +Q  +   + 
Sbjct: 6   IYIKTWGCQMNEYDSALITQILKQKHGYENTKDPKLANVLILNTCSIREKAQEKVFHQLG 65

Query: 369 -----KCKTANKPLVVAGCV--PQGSRDLKELEGISII-GVQQIDRVVEVVEETLK 512
                K K  N  + V GCV   +G    K    + II G Q +  +  +++E  K
Sbjct: 66  RWKKLKQKNPNLIIAVGGCVATQEGKNIYKRANYVDIIFGTQTLHYLPNMIQEVKK 121

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>Y285_HELPJ (Q9ZMF0) Hypothetical UPF0004 protein jhp_0270|
          Length = 418

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 27/73 (36%), Positives = 41/73 (56%)
 Frame = +3

Query: 192 IYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLISK 371
           +Y KTFGC  N  D++ M   L  F  + T E + AD+ +IN+CTV N + SA+ +   K
Sbjct: 4   VYFKTFGCRTNLFDTQVMGENLKDF--SATLEEQEADIIIINSCTVTNGTDSAVRSYARK 61

Query: 372 CKTANKPLVVAGC 410
               +K ++  GC
Sbjct: 62  MARLDKEVLFTGC 74

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>Y808_RICPR (Q9ZCE8) Hypothetical UPF0004 protein RP808|
          Length = 445

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
 Frame = +3

Query: 183 TQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVK-NPSQSAMST 359
           ++ +Y+KT+GC  N  DS  +   L  FGY  TE+ + AD+ ++NTC ++   ++   S 
Sbjct: 2   SKKLYIKTYGCQMNVYDSVKIQDLLYPFGYESTEDIKEADIIILNTCHIREKAAEKTYSE 61

Query: 360 L--ISKCKTANKP-------LVVAGCVPQ--GSRDLKELEGISI-IGVQQIDRVVEVVEE 503
           L  I K +   K        +VVAGCV Q  G         + I +G Q    + E++ +
Sbjct: 62  LGRIKKLQNTRKQEGLNPAIIVVAGCVAQAEGEEIFSRTPYVDIVVGPQSYYNLPELISK 121

Query: 504 TLKGHE 521
            ++ HE
Sbjct: 122 VVR-HE 126

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>Y849_AQUAE (O67016) Hypothetical UPF0004 protein aq_849|
          Length = 432

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 27/85 (31%), Positives = 45/85 (52%)
 Frame = +3

Query: 192 IYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLISK 371
           I V + GC+ N  DSE + G+L   G  +T  PE AD+ ++NTC    P++      I +
Sbjct: 3   IGVVSLGCAKNLVDSEILLGKLKGAGVELTPNPEEADVIIVNTCGFIEPAKLESIETILE 62

Query: 372 CKTANKPLVVAGCVPQGSRDLKELE 446
              + K ++V GC+ +  ++  E E
Sbjct: 63  FAESGKEVIVMGCLVERYKEELEKE 87

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>Y474_AQUAE (O66772) Hypothetical UPF0004 protein aq_474|
          Length = 410

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
 Frame = +3

Query: 201 KTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLISKCKT 380
           +T GC  NQ D++ +  +    GY +    + AD+++INTCTV      +    I + K 
Sbjct: 6   ETLGCRMNQFDTDLLKNKFIQKGYEVVSFEDMADVYVINTCTVTVGGDRSSRQAIYQAKR 65

Query: 381 AN-KPLVVA-GCV----PQGSRDLKELEGISIIGVQQIDRVVEVVEETLKGHE 521
            N K +VVA GC     PQ    LKE++   ++G      +++++EE L+  E
Sbjct: 66  RNPKAIVVATGCYAQVNPQELAKLKEVD--LVVGNTHKSELLKILEEYLERRE 116

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>Y989_MYCLE (Q49842) Hypothetical UPF0004 protein ML0989|
          Length = 517

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
 Frame = +3

Query: 165 DARIPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGY--AITEEPEG-ADLWLINTCTVKN 335
           DA    T+T  V+T+GC  N  DSE ++G L A GY  A  E   G AD+ + NTC V+ 
Sbjct: 11  DAATGSTRTYQVRTYGCQMNVHDSERLAGLLEAAGYQRAADEADVGDADVVVFNTCAVRE 70

Query: 336 PSQSAMSTLIS-----KCKTANKPLVVAGCVPQ 419
            + + +   +S     K    +  + V GC+ Q
Sbjct: 71  NADNRLYGNLSHLAPRKRNNPDMQIAVGGCLAQ 103

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>YQEV_BACSU (P54462) Hypothetical UPF0004 protein yqeV|
          Length = 451

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
 Frame = +3

Query: 189 TIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLIS 368
           T+   T GC  N  ++E +       GY   +  + AD+++INTCTV N        +I 
Sbjct: 3   TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62

Query: 369 KCKTANKP--LVVAGCVPQGS-RDLKELEGISI-IGVQQIDRVVEVVEE 503
           +    N    + V GC  Q S  ++  + G+ I +G Q  ++++  +++
Sbjct: 63  RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQ 111

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>Y3980_PSEAE (Q51470) Hypothetical UPF0004 protein PA3980|
          Length = 446

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
 Frame = +3

Query: 192 IYVKTFGCSHNQSDSEYMSGQLSAF-GYAITEEPEGADLWLINTCTVKNPSQSAMSTLIS 368
           ++++T GC  N+ DS  M+  L       +TE    AD+ L+NTC+++  +Q  + + + 
Sbjct: 5   LFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKAQEKVFSKLG 64

Query: 369 ---KCKTANKPLV--VAGCV--PQGSRDLKELEGISII-GVQQIDRVVEVVE 500
              + K  N  LV  V GCV   +G+   +    + ++ G Q + R+ E+++
Sbjct: 65  MWRELKQQNPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMID 116

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>CK5P1_RAT (Q9JLH6) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 586

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
 Frame = +3

Query: 120 PKRRPSRLVQTQPQP----DARIPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEE 287
           P+ +PS      P P    D  +   + +Y++T+GC  N +D+E     L   GY  T  
Sbjct: 71  PQEKPSSPEVEDPPPYLSGDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSN 130

Query: 288 PEGADLWLINTCTVKNPSQSAMSTLISKCK 377
            + AD+ L+ TC+++  ++  +   + + K
Sbjct: 131 LQEADVILLVTCSIREKAEQTIWNRLHQLK 160

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>YLIG_ECOLI (P0AEI4) Hypothetical UPF0004 protein yliG|
          Length = 441

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
 Frame = +3

Query: 204 TFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLISKCKTA 383
           + GC  N  DSE +  +L   GY +    + AD+ ++NTC   + +       I +    
Sbjct: 14  SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIGEALNE 73

Query: 384 NKPLVVAGCVPQGSRDLKEL--EGISIIGVQQIDRVVEVV 497
           N  ++V GC+      ++E+  + + I G    ++V+E V
Sbjct: 74  NGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHV 113

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>YLIG_ECO57 (P0AEI5) Hypothetical UPF0004 protein yliG|
          Length = 441

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
 Frame = +3

Query: 204 TFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLISKCKTA 383
           + GC  N  DSE +  +L   GY +    + AD+ ++NTC   + +       I +    
Sbjct: 14  SLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIGEALNE 73

Query: 384 NKPLVVAGCVPQGSRDLKEL--EGISIIGVQQIDRVVEVV 497
           N  ++V GC+      ++E+  + + I G    ++V+E V
Sbjct: 74  NGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHV 113

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>Y1571_PASMU (Q9CKN9) Hypothetical UPF0004 protein PM1571|
          Length = 446

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
 Frame = +3

Query: 204 TFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLISKCKTA 383
           + GC  N  DSE +  +L + GY I    E ADL ++NTC   + +       I +    
Sbjct: 12  SLGCPKNLVDSERILTELRSDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGEALEE 71

Query: 384 NKPLVVAGCVPQGSRDLKEL--EGISIIGVQQIDRVVEVVEE 503
           N  ++V GC+      ++E+  + + + G    + V++ V +
Sbjct: 72  NGKVIVTGCLGAKEDRIREVHPKVLEVTGPHSYEAVMQQVHK 113

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>CK5P1_CAEEL (Q09316) CDK5RAP1-like protein|
          Length = 547

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
 Frame = +3

Query: 186 QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM--ST 359
           +T+   T+GC  N SD E +   ++ +G+  +++ E AD+ L+ TC++++ ++  +    
Sbjct: 79  RTVCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRDGAEKKVWNQL 138

Query: 360 LISKCKTANKPLVVA--GCVPQGSR-DLKE 440
            + +  + NK  +V   GC+ +  R DL E
Sbjct: 139 KLIRSNSVNKGQIVGVLGCMAERVRHDLLE 168

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>CK5P1_MOUSE (Q8BTW8) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 588

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
 Frame = +3

Query: 120 PKRRPSRLVQTQPQP----DARIPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEE 287
           P+ +PS      P P    D  +   + +Y++T+GC  N +D+E     L   GY  T  
Sbjct: 73  PQEKPSSPEVEDPPPYLSGDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSN 132

Query: 288 PEGADLWLINTCTVKNPSQSAMSTLISKCK 377
            + AD+ L+ TC+++  ++  +   + + K
Sbjct: 133 LQEADVILLVTCSIREKAEQTIWNRLHQLK 162

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>CK5P1_ARATH (Q8H0V1) CDK5RAP1-like protein|
          Length = 640

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
 Frame = +3

Query: 165 DARIPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGY-AITEEPEGADLWLINTCTVKNPS 341
           D+ I     IY +T+GC  N +D E +   +   GY  +  +PE A++  +NTC ++  +
Sbjct: 122 DSDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCAIRENA 181

Query: 342 QS----------------AMSTLISKCKTANKP-LVVAGCVPQGSRDLKELEGISIIGV- 467
           +                  ++    + K+   P +VV GC+ +  +D K L+   ++ V 
Sbjct: 182 EQRVWQRLNYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKD-KILDSDKMVDVV 240

Query: 468 ------QQIDRVVEVVEETLKG 515
                 + + R++E V+   KG
Sbjct: 241 CGPDAYRDLPRLLEEVDYGQKG 262

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>CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein|
          Length = 583

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
 Frame = +3

Query: 192 IYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSA------- 350
           ++ + +GC  N +D+E +   L   GY   +EPE AD+ ++ TC V++ ++         
Sbjct: 94  VHFEVYGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNRLKH 153

Query: 351 MSTLISKCKTANKP--LVVAGCVPQ 419
           +  + +K  T   P  L + GC+ +
Sbjct: 154 LRAMKNKRSTRRHPLQLTLLGCMAE 178

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>CK5P1_HUMAN (Q96SZ6) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 601

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = +3

Query: 111 AVKPKRRPSRLVQTQP---QPDARIPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAIT 281
           A  P+ + S  V+  P     D  +   + +Y++T+GC  N +D+E     L   GY  T
Sbjct: 72  ASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRT 131

Query: 282 EEPEGADLWLINTCTVKNPSQSAMSTLISKCK 377
              + AD+ L+ TC+++  ++  +   + + K
Sbjct: 132 SNLQEADVILLVTCSIREKAEQTIWNRLHQLK 163

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>Y754_TREPA (O83735) Hypothetical UPF0004 protein TP0754|
          Length = 456

 Score = 37.7 bits (86), Expect = 0.019
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = +3

Query: 189 TIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMSTLIS 368
           T + +T+GC  N ++S  +   L A G+    + +  D+ +INTC+V+  +++ +   + 
Sbjct: 2   TYFFETYGCQMNVAESASVEQLLLARGWTKAVDAQTCDVLIINTCSVRITAETRVFGRLG 61

Query: 369 KCKTANKP----LVVAGCVPQGSRD 431
              +  K     +++ GC+ Q   D
Sbjct: 62  LFSSLKKKRAFFIILMGCMAQRLHD 86

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>Y477_CHLPN (Q9Z874) Hypothetical UPF0004 protein|
           CPn_0477/CP0277/CPj0477/CpB0496
          Length = 421

 Score = 37.0 bits (84), Expect = 0.033
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
 Frame = +3

Query: 189 TIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPE-GADLWLINTCTVKNPSQS----AM 353
           T  +   GC  NQ + +    QL+  GY    + E  ADL +INTC V   ++S    A+
Sbjct: 9   TFKLVCLGCRVNQYEVQAYRDQLTILGYQEVLDSEIPADLCIINTCAVTASAESSGRHAV 68

Query: 354 STLISKCKTANKPLVVAGCVPQGSRD 431
             L  +  TA+  +VV GC+ +  ++
Sbjct: 69  RQLCRQNPTAH--IVVTGCLGESDKE 92

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>Y1247_ARCFU (O29021) Hypothetical UPF0004 protein AF1247|
          Length = 405

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 20/77 (25%), Positives = 40/77 (51%)
 Frame = +3

Query: 291 EGADLWLINTCTVKNPSQSAMSTLISKCKTANKPLVVAGCVPQGSRDLKELEGISIIGVQ 470
           E A++ +IN+C V + ++  +   +   K   K +V+AGC+ + S++   +   S +   
Sbjct: 15  EDAEVVIINSCGVIDFTERKIIRRMLDLKREGKKVVLAGCLTRISKEALSVAD-SALSPD 73

Query: 471 QIDRVVEVVEETLKGHE 521
            +D VV+ V   L G +
Sbjct: 74  NLDMVVDAVYSALNGRK 90

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>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 140 PGRPALGLDGDSGER*AEPGRRSAAGKPGR 51
           PGRP   ++G  G+R   PG    AG+PGR
Sbjct: 625 PGRPGQAINGKDGDR-GSPGAPGEAGRPGR 653

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>TRPA_HAEIN (P43759) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 268

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
 Frame = +3

Query: 168 ARIPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQS 347
           A+  G Q +++    C  N  +        ++ GY       G         + +N + +
Sbjct: 143 AKKHGIQPVFI----CPPNADEKTIQGVAKNSEGYTYLVSRAGVT-------SAENQAHA 191

Query: 348 A-MSTLISKCKTANKPLVVAGCVPQGSRDLKELEGISIIGVQQIDRVVEVVEETLKGHE 521
           A + TL+ K K  N P ++ G        +KE   +   G       V+++E  L  HE
Sbjct: 192 ANLDTLVEKLKAHNAPPILQGFGIAQPEQVKEALSLGTAGAISGSATVKIIERNLDNHE 250

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>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor|
          Length = 689

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 140 PGRPALGLDGDSGER*AEPGRRSAAGKPG 54
           PGRP   ++G  G+R   PG    AG+PG
Sbjct: 626 PGRPGQAINGKDGDR-GSPGAPGEAGRPG 653

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>Y269_TREPA (O83293) Hypothetical UPF0004 protein TP0269|
          Length = 482

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +3

Query: 189 TIYVKTFGCSHNQSDSEYMSGQLSAFGYAI---TEEPEGADLWLINTCTVKNPSQSAMST 359
           ++ ++T GC  N  +SE ++      G+A+           L +INTCTV + ++     
Sbjct: 3   SVRIETLGCRLNHVESESLAALFLQEGFAVCRGNTSTAPVVLCVINTCTVTSKAEQKARR 62

Query: 360 LI 365
           L+
Sbjct: 63  LV 64

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>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor|
          Length = 1691

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 140 PGRPAL-GLDGDSGER*AEPGRRSAAGKPGRSQHV 39
           PG+P + G  GD G+   +PG+    G PGR   V
Sbjct: 643 PGQPGIPGPKGDPGQTITQPGKPGLPGNPGRHGEV 677

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>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor|
          Length = 1685

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 140 PGRPAL-GLDGDSGER*AEPGRRSAAGKPGRSQHV 39
           PG+P + G  GD G+   +PG+    G PGR   V
Sbjct: 643 PGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDV 677

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>MUG2_MOUSE (P28666) Murinoglobulin-2 precursor (MuG2)|
          Length = 1451

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
 Frame = +3

Query: 141  LVQTQPQPDARIPGTQTIYVKTFGCSHNQSDSEY---MSGQLSAFGYAI------TEEPE 293
            L+Q  P PD  IPG  TI V   GC + Q+   Y   +  Q SAF   +         P+
Sbjct: 1276 LLQQVPLPD--IPGDYTISVSGEGCVYAQTTLRYNMHLEKQQSAFALRVQTVPLTCNNPK 1333

Query: 294  GADLWLINTCTVKNPSQSAMSTLISKCKTANKPLVVAGCVP--QGSRDLKELEGIS 455
            G + + I+       S+ A + +I+  K      +++G +P     + L+ LE IS
Sbjct: 1334 GHNSFQISLEISYTGSRPASNMVIADVK------MLSGFIPLKPTVKKLERLEHIS 1383

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>MES4_CAEEL (Q9NH52) Probable histone methyltransferase mes-4 (Maternal-effect|
           sterile protein 4)
          Length = 898

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 315 NTCTVKNPSQSAMSTLISKCKTANKPLVVAGCVPQGSRDL 434
           N+C + +  QSA    I++C    +   +  C P G RDL
Sbjct: 209 NSCNLDHHKQSAYVGDIAECALCLRAFHLTSCYPSGGRDL 248

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>RDC1_HUMAN (P25106) G-protein coupled receptor RDC1 homolog (Chemokine orphan|
           receptor 1) (G-protein coupled receptor 159)
          Length = 362

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
 Frame = -3

Query: 491 FNNPIYLLHSYYTNTFKLLQIPASLWHTASYNQW----LVCRLAF*YES*HGRLTWIFHS 324
           ++   Y+L+    + + +L IP  +     +NQW    L C++     S     + IF  
Sbjct: 77  YDTHCYILNLAIADLWVVLTIPVWVVSLVQHNQWPMGELTCKVTHLIFS-INLFSSIFFL 135

Query: 323 ACVN*PQISSFRLFSNCISKRRELPRHVLTV 231
            C++  +  S   F+N  S R+++ R V+ +
Sbjct: 136 TCMSVDRYLSITYFTNTPSSRKKMVRRVVCI 166

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>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor|
          Length = 1775

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 137 GRPAL-GLDGDSGER*AEPGRRSAAGKPG 54
           G P L GL G+ G++  EPGR  A G+PG
Sbjct: 358 GEPGLNGLPGNPGQK-GEPGRAGATGEPG 385

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>Y421_HAEIN (P43996) Hypothetical protein HI0421|
          Length = 54

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 381 ANKPLVVAGCVPQGSRDLKELEGISIIGVQQIDRV 485
           AN+P+  AG +  G+  L    GIS+IG+   D+V
Sbjct: 20  ANRPIKTAGILGYGTPLLIRSFGISVIGIDNADKV 54

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>KCNN1_HUMAN (Q92952) Small conductance calcium-activated potassium channel|
           protein 1 (SK1)
          Length = 561

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
 Frame = -3

Query: 173 PGIWLGLRLHEPGRPALGL--------DGDSGER*AEPGRRSAAGKPGRSQH 42
           PG+ + +   EP RP+ G         D D  +   E GR+ A+GKP    H
Sbjct: 58  PGLQVVVAKSEPARPSPGSPRGQPQDQDDDEDDEEDEAGRQRASGKPSNVGH 109

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>THIE2_STRR6 (P66921) Probable thiamine-phosphate pyrophosphorylase 2 (EC|
           2.5.1.3) (TMP pyrophosphorylase 2) (TMP-PPase 2)
           (Thiamine-phosphate synthase 2)
          Length = 210

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +3

Query: 273 AITEEPEGADLW----LINTCTVKNPSQSAMSTLISKCKTANKPLVVAGCVPQGSRDLKE 440
           A+  E  GAD      +  T T +N   + +STL + C+T   P+V  G +   S ++ +
Sbjct: 116 ALEAEKSGADYLGTGAIFPTTTKENAPITLISTLKTICQTVAIPVVAIGGLT--SENIDQ 173

Query: 441 LEGISIIGV 467
           L G  I GV
Sbjct: 174 LMGTGIAGV 182

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>THIE2_STRPN (P66920) Probable thiamine-phosphate pyrophosphorylase 2 (EC|
           2.5.1.3) (TMP pyrophosphorylase 2) (TMP-PPase 2)
           (Thiamine-phosphate synthase 2)
          Length = 210

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +3

Query: 273 AITEEPEGADLW----LINTCTVKNPSQSAMSTLISKCKTANKPLVVAGCVPQGSRDLKE 440
           A+  E  GAD      +  T T +N   + +STL + C+T   P+V  G +   S ++ +
Sbjct: 116 ALEAEKSGADYLGTGAIFPTTTKENAPITLISTLKTICQTVAIPVVAIGGLT--SENIDQ 173

Query: 441 LEGISIIGV 467
           L G  I GV
Sbjct: 174 LMGTGIAGV 182

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>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 140 PG-RPALGLDGDSGER*AEPGRRSAAGKPGR 51
           PG R A G+ G  GE+  EPG R   G PGR
Sbjct: 642 PGERGAAGIPGGKGEK-GEPGLRGEIGNPGR 671

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>ANKR5_MOUSE (Q9D2J7) Ankyrin repeat domain-containing protein 5|
          Length = 775

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 316 LISHKSAPSGSSVIAYPNAESCPDMYSLSLWLCEHPNVLTYIVCVPGIRASGWG 155
           LI+      G S +   +  +  DM S  L L  HP+V  ++ C P +RA+  G
Sbjct: 39  LINFTEPIDGLSALHLASISNDTDMVSFLLKLGAHPDVQDHMGCTPTMRAAELG 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,079,641
Number of Sequences: 219361
Number of extensions: 1289961
Number of successful extensions: 4172
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 3981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4156
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result