ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472569.1| Oryza sativa (japonica cultivar-group), predic... 450 e-123
2dbj|AK101879.1| Oryza sativa (japonica cultivar-group) cDNA clon... 430 e-117
3emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4,... 206 5e-50
4emb|AL606626.3|OSJN00050 Oryza sativa genomic DNA, chromosome 4,... 206 5e-50
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 206 5e-50
6gb|BT013138.1| Lycopersicon esculentum clone 114440F, mRNA sequence 72 2e-09
7ref|NM_105867.2| Arabidopsis thaliana catalytic/ iron ion bindin... 62 2e-06
8gb|AF367274.1|AF367274 Arabidopsis thaliana At1g72090/F28P5_4 mR... 62 2e-06
9gb|BT002712.1| Arabidopsis thaliana At1g72090/F28P5_4 gene, comp... 62 2e-06
10ref|XM_590139.2| PREDICTED: Bos taurus similar to Troponin C-aki... 44 0.45
11ref|XM_418914.1| PREDICTED: Gallus gallus similar to CDK5 regula... 44 0.45
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.45
13ref|XM_001003747.1| PREDICTED: Mus musculus RIKEN cDNA 2010321M0... 44 0.45
14gb|BC024913.1| Mus musculus cDNA clone MGC:28004 IMAGE:3602181, ... 44 0.45
15dbj|AK169772.1| Mus musculus 2 days neonate thymus thymic cells ... 44 0.45
16dbj|AK168222.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-... 44 0.45
17dbj|AK035654.1| Mus musculus adult male urinary bladder cDNA, RI... 44 0.45
18dbj|AK032095.1| Mus musculus adult male medulla oblongata cDNA, ... 44 0.45
19dbj|AK086850.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 44 0.45
20dbj|AK050654.1| Mus musculus 2 days neonate thymus thymic cells ... 44 0.45
21dbj|AK041578.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 44 0.45
22ref|XM_396696.2| PREDICTED: Apis mellifera similar to GA19679-PA... 44 0.45
23dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
24ref|NM_175153.2| Mus musculus RIKEN cDNA 2010321M09 gene (201032... 44 0.45
25gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.45
26gb|AC122463.4| Mus musculus BAC clone RP24-296C19 from 9, comple... 44 0.45
27gb|AC146720.23| Medicago truncatula clone mth2-17n5, complete se... 42 1.8
28gb|AC009695.7| Homo sapiens chromosome 8, clone RP11-130C12, com... 42 1.8
29gb|AC022716.13| Homo sapiens chromosome 8, clone RP11-135I5, com... 42 1.8
30emb|BX072559.10| Zebrafish DNA sequence from clone CH211-272F15 ... 42 1.8
31gb|AC164094.5| Mus musculus BAC clone RP23-133F10 from chromosom... 40 7.1
32gb|AC146277.2| Pan troglodytes BAC clone CH251-17J20 from X, com... 40 7.1
33gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, co... 40 7.1
34gb|AC144386.2| Pan troglodytes BAC clone CH251-313C12 from X, co... 40 7.1
35gb|AC161216.4| Mus musculus chromosome 7, clone RP23-8K23, compl... 40 7.1
36gb|AC124563.4| Mus musculus BAC clone RP23-206B15 from chromosom... 40 7.1
37ref|XM_812477.1| Trypanosoma cruzi strain CL Brener tRNA modific... 40 7.1
38ref|XM_813979.1| Trypanosoma cruzi strain CL Brener tRNA modific... 40 7.1
39emb|Z68332.1|HSV775G11 Human DNA sequence from clone GHc-775G11 ... 40 7.1
40emb|AL590069.5| Human DNA sequence from clone RP11-353J17 on chr... 40 7.1
41gb|AC107980.8| Homo sapiens chromosome 15, clone CTD-3118D7, com... 40 7.1
42gb|AC160831.2| Xenopus tropicalis BAC clone ISB1-45G24 containin... 40 7.1
43gb|AE005987.1| Caulobacter crescentus CB15 section 313 of 359 of... 40 7.1
44dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
45gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, co... 40 7.1
46dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.1
47dbj|AP003044.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
48gb|AC131315.16| Mus musculus chromosome 7, clone RP24-535I10, co... 40 7.1
49gb|AC002062.1|F20P5 Sequence of BAC F20P5 from Arabidopsis thali... 40 7.1
50gb|DQ278076.1| Haliotis rubra clone Hrub4.G05 microsatellite seq... 40 7.1 
>ref|XM_472569.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1881

 Score =  450 bits (227), Expect = e-123
 Identities = 431/497 (86%), Gaps = 4/497 (0%)
 Strand = Plus / Plus

                                                                       
Query: 30  acatcgaggnacgtgctgggaccggccgggttttccggcggcggagcgcctcccgggctc 89
           ||||||||| |||||||||| ||||||||| |  |||||||||| ||| |||| ||||||
Sbjct: 14  acatcgagg-acgtgctggggccggccgggatcgccggcggcggggcggctccggggctc 72

                                                                       
Query: 90  cgcctacctctctccactgtcgccgtcaagcccaagcgc---aggccgtccaggctcgtg 146
           || || || ||| || | |||||||| |||||||||||    ||  |||||||| ||| |
Sbjct: 73  cgtctcccgctcgccgccgtcgccgtgaagcccaagcgtccgagatcgtccagggtcgcg 132

                                                                       
Query: 147 cagacgcagccccagccagatgcccggatcccaggcacgcagacgatatacgtcaagaca 206
           ||||| | ||| ||||| || ||||||||||| || |||||||||||||| || ||||| 
Sbjct: 133 cagacccggccgcagcccgaggcccggatccccgggacgcagacgatatatgtgaagacg 192

                                                                       
Query: 207 ttcgggtgctcacataaccagagtgacagtgagtacatgtcggggcagctctcggcgttt 266
           ||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct: 193 ttcgggtgctcgcataaccagagtgacagtgagtacatgtcagggcagctgtcagcgttt 252

                                                                       
Query: 267 ggatatgcaattactgaagagcctgaaggagctgatttgtggctaattaacacatgcact 326
           |||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 253 ggatatgcgatcactgaagagcccgaaggagcggatttgtggctaattaacacatgcact 312

                                                                       
Query: 327 gtgaaaaatccaagtcaatctgccatgtcaactctcatatcaaaatgcaagacggcaaac 386
           |||||||| |||||||| ||||||||| ||||||||||||| || |||||||  ||||||
Sbjct: 313 gtgaaaaacccaagtcagtctgccatgacaactctcatatcgaagtgcaagagtgcaaac 372

                                                                       
Query: 387 aagccactggttgtagctggctgtgtgccacaaggaagccgggatctgaaggagcttgaa 446
           |||||  ||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 373 aagcctttggttgtggctggatgtgtaccacaaggaagccgggatctgaaagagcttgaa 432

                                                                       
Query: 447 ggtattagtataataggagtgcagcagatagatcgggttgttgaagtagttgaggaaact 506
           ||||||||  | || |||||||| ||||| || || ||||||||||| ||||| ||||| 
Sbjct: 433 ggtattagcgttattggagtgcaacagattgaccgcgttgttgaagttgttgaagaaacc 492

                            
Query: 507 ttaaaagggcatgaggt 523
           |||||||| ||||||||
Sbjct: 493 ttaaaaggccatgaggt 509
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>dbj|AK101879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070J24, full
           insert sequence
          Length = 1961

 Score =  430 bits (217), Expect = e-117
 Identities = 421/487 (86%), Gaps = 4/487 (0%)
 Strand = Plus / Plus

                                                                       
Query: 40  acgtgctgggaccggccgggttttccggcggcggagcgcctcccgggctccgcctacctc 99
           |||||||||| ||||||||| |  |||||||||| ||| |||| |||||||| || || |
Sbjct: 9   acgtgctggggccggccgggatcgccggcggcggggcggctccggggctccgtctcccgc 68

                                                                       
Query: 100 tctccactgtcgccgtcaagcccaagcgc---aggccgtccaggctcgtgcagacgcagc 156
           || || | |||||||| |||||||||||    ||  || ||||| ||| |||||| | ||
Sbjct: 69  tcgccgccgtcgccgtgaagcccaagcgtccgagatcg-ccagggtcgcgcagacccggc 127

                                                                       
Query: 157 cccagccagatgcccggatcccaggcacgcagacgatatacgtcaagacattcgggtgct 216
           | ||||| || ||||||||||| || |||||||||||||| || ||||| ||||||||||
Sbjct: 128 cgcagcccgaggcccggatccccgggacgcagacgatatatgtgaagacgttcgggtgct 187

                                                                       
Query: 217 cacataaccagagtgacagtgagtacatgtcggggcagctctcggcgtttggatatgcaa 276
           | ||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |
Sbjct: 188 cgcataaccagagtgacagtgagtacatgtcagggcagctgtcagcgtttggatatgcga 247

                                                                       
Query: 277 ttactgaagagcctgaaggagctgatttgtggctaattaacacatgcactgtgaaaaatc 336
           | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 248 tcactgaagagcccgaaggagcggatttgtggctaattaacacatgcactgtgaaaaacc 307

                                                                       
Query: 337 caagtcaatctgccatgtcaactctcatatcaaaatgcaagacggcaaacaagccactgg 396
           ||||||| ||||||||| ||||||||||||| || |||||||  |||||||||||  |||
Sbjct: 308 caagtcagtctgccatgacaactctcatatcgaagtgcaagagtgcaaacaagcctttgg 367

                                                                       
Query: 397 ttgtagctggctgtgtgccacaaggaagccgggatctgaaggagcttgaaggtattagta 456
           |||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||  
Sbjct: 368 ttgtggctggatgtgtaccacaaggaagccgggatctgaaagagcttgaaggtattagcg 427

                                                                       
Query: 457 taataggagtgcagcagatagatcgggttgttgaagtagttgaggaaactttaaaagggc 516
           | || |||||||| ||||| || || ||||||||||| ||||| ||||| |||||||| |
Sbjct: 428 ttattggagtgcaacagattgaccgcgttgttgaagttgttgaagaaaccttaaaaggcc 487

                  
Query: 517 atgaggt 523
           |||||||
Sbjct: 488 atgaggt 494
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>emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13,
             complete sequence
          Length = 127952

 Score =  206 bits (104), Expect = 5e-50
 Identities = 179/204 (87%)
 Strand = Plus / Minus

                                                                         
Query: 320   atgcactgtgaaaaatccaagtcaatctgccatgtcaactctcatatcaaaatgcaagac 379
             ||||||||||||||| |||||||| ||||||||| ||||||||||||| || ||||||| 
Sbjct: 37139 atgcactgtgaaaaacccaagtcagtctgccatgacaactctcatatcgaagtgcaagag 37080

                                                                         
Query: 380   ggcaaacaagccactggttgtagctggctgtgtgccacaaggaagccgggatctgaagga 439
              |||||||||||  ||||||| ||||| ||||| ||||||||||||||||||||||| ||
Sbjct: 37079 tgcaaacaagcctttggttgtggctggatgtgtaccacaaggaagccgggatctgaaaga 37020

                                                                         
Query: 440   gcttgaaggtattagtataataggagtgcagcagatagatcgggttgttgaagtagttga 499
             |||||||||||||||  | || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 37019 gcttgaaggtattagcgttattggagtgcaacagattgaccgcgttgttgaagttgttga 36960

                                     
Query: 500   ggaaactttaaaagggcatgaggt 523
              ||||| |||||||| ||||||||
Sbjct: 36959 agaaaccttaaaaggccatgaggt 36936



 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                         
Query: 225   cagagtgacagtgagtacatgtcggggcagctctcggcgtttggatatgcaattactgaa 284
             ||||||||||||||||||||||| |||||||| || |||||||||||||| || ||||||
Sbjct: 37553 cagagtgacagtgagtacatgtcagggcagctgtcagcgtttggatatgcgatcactgaa 37494

                                                
Query: 285   gagcctgaaggagctgatttgtggctaattaacac 319
             ||||| |||||||| ||||||||||||||||||||
Sbjct: 37493 gagcccgaaggagcggatttgtggctaattaacac 37459



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 132/162 (81%), Gaps = 4/162 (2%)
 Strand = Plus / Minus

                                                                         
Query: 30    acatcgaggnacgtgctgggaccggccgggttttccggcggcggagcgcctcccgggctc 89
             ||||||||| |||||||||| ||||||||| |  |||||||||| ||| |||| ||||||
Sbjct: 38110 acatcgagg-acgtgctggggccggccgggatcgccggcggcggggcggctccggggctc 38052

                                                                         
Query: 90    cgcctacctctctccactgtcgccgtcaagcccaagcg---caggccgtccaggctcgtg 146
             || || || ||| || | |||||||| |||||||||||    ||  |||||||| ||| |
Sbjct: 38051 cgtctcccgctcgccgccgtcgccgtgaagcccaagcgtccgagatcgtccagggtcgcg 37992

                                                       
Query: 147   cagacgcagccccagccagatgcccggatcccaggcacgcag 188
             ||||| | ||| ||||| || ||||||||||| || ||||||
Sbjct: 37991 cagacccggccgcagcccgaggcccggatccccgggacgcag 37950



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 185   gcagacgatatacgtcaagacattcgggtgctcacataaccag 227
             |||||||||||| || ||||| ||||||||||| |||||||||
Sbjct: 37861 gcagacgatatatgtgaagacgttcgggtgctcgcataaccag 37819
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>emb|AL606626.3|OSJN00050 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088K19,
              complete sequence
          Length = 156002

 Score =  206 bits (104), Expect = 5e-50
 Identities = 179/204 (87%)
 Strand = Plus / Minus

                                                                          
Query: 320    atgcactgtgaaaaatccaagtcaatctgccatgtcaactctcatatcaaaatgcaagac 379
              ||||||||||||||| |||||||| ||||||||| ||||||||||||| || ||||||| 
Sbjct: 124686 atgcactgtgaaaaacccaagtcagtctgccatgacaactctcatatcgaagtgcaagag 124627

                                                                          
Query: 380    ggcaaacaagccactggttgtagctggctgtgtgccacaaggaagccgggatctgaagga 439
               |||||||||||  ||||||| ||||| ||||| ||||||||||||||||||||||| ||
Sbjct: 124626 tgcaaacaagcctttggttgtggctggatgtgtaccacaaggaagccgggatctgaaaga 124567

                                                                          
Query: 440    gcttgaaggtattagtataataggagtgcagcagatagatcgggttgttgaagtagttga 499
              |||||||||||||||  | || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 124566 gcttgaaggtattagcgttattggagtgcaacagattgaccgcgttgttgaagttgttga 124507

                                      
Query: 500    ggaaactttaaaagggcatgaggt 523
               ||||| |||||||| ||||||||
Sbjct: 124506 agaaaccttaaaaggccatgaggt 124483



 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                          
Query: 225    cagagtgacagtgagtacatgtcggggcagctctcggcgtttggatatgcaattactgaa 284
              ||||||||||||||||||||||| |||||||| || |||||||||||||| || ||||||
Sbjct: 125100 cagagtgacagtgagtacatgtcagggcagctgtcagcgtttggatatgcgatcactgaa 125041

                                                 
Query: 285    gagcctgaaggagctgatttgtggctaattaacac 319
              ||||| |||||||| ||||||||||||||||||||
Sbjct: 125040 gagcccgaaggagcggatttgtggctaattaacac 125006



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 132/162 (81%), Gaps = 4/162 (2%)
 Strand = Plus / Minus

                                                                          
Query: 30     acatcgaggnacgtgctgggaccggccgggttttccggcggcggagcgcctcccgggctc 89
              ||||||||| |||||||||| ||||||||| |  |||||||||| ||| |||| ||||||
Sbjct: 125657 acatcgagg-acgtgctggggccggccgggatcgccggcggcggggcggctccggggctc 125599

                                                                          
Query: 90     cgcctacctctctccactgtcgccgtcaagcccaagcg---caggccgtccaggctcgtg 146
              || || || ||| || | |||||||| |||||||||||    ||  |||||||| ||| |
Sbjct: 125598 cgtctcccgctcgccgccgtcgccgtgaagcccaagcgtccgagatcgtccagggtcgcg 125539

                                                        
Query: 147    cagacgcagccccagccagatgcccggatcccaggcacgcag 188
              ||||| | ||| ||||| || ||||||||||| || ||||||
Sbjct: 125538 cagacccggccgcagcccgaggcccggatccccgggacgcag 125497



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 185    gcagacgatatacgtcaagacattcgggtgctcacataaccag 227
              |||||||||||| || ||||| ||||||||||| |||||||||
Sbjct: 125408 gcagacgatatatgtgaagacgttcgggtgctcgcataaccag 125366
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  206 bits (104), Expect = 5e-50
 Identities = 179/204 (87%)
 Strand = Plus / Minus

                                                                            
Query: 320      atgcactgtgaaaaatccaagtcaatctgccatgtcaactctcatatcaaaatgcaagac 379
                ||||||||||||||| |||||||| ||||||||| ||||||||||||| || ||||||| 
Sbjct: 21602597 atgcactgtgaaaaacccaagtcagtctgccatgacaactctcatatcgaagtgcaagag 21602538

                                                                            
Query: 380      ggcaaacaagccactggttgtagctggctgtgtgccacaaggaagccgggatctgaagga 439
                 |||||||||||  ||||||| ||||| ||||| ||||||||||||||||||||||| ||
Sbjct: 21602537 tgcaaacaagcctttggttgtggctggatgtgtaccacaaggaagccgggatctgaaaga 21602478

                                                                            
Query: 440      gcttgaaggtattagtataataggagtgcagcagatagatcgggttgttgaagtagttga 499
                |||||||||||||||  | || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 21602477 gcttgaaggtattagcgttattggagtgcaacagattgaccgcgttgttgaagttgttga 21602418

                                        
Query: 500      ggaaactttaaaagggcatgaggt 523
                 ||||| |||||||| ||||||||
Sbjct: 21602417 agaaaccttaaaaggccatgaggt 21602394



 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                            
Query: 225      cagagtgacagtgagtacatgtcggggcagctctcggcgtttggatatgcaattactgaa 284
                ||||||||||||||||||||||| |||||||| || |||||||||||||| || ||||||
Sbjct: 21603011 cagagtgacagtgagtacatgtcagggcagctgtcagcgtttggatatgcgatcactgaa 21602952

                                                   
Query: 285      gagcctgaaggagctgatttgtggctaattaacac 319
                ||||| |||||||| ||||||||||||||||||||
Sbjct: 21602951 gagcccgaaggagcggatttgtggctaattaacac 21602917



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 132/162 (81%), Gaps = 4/162 (2%)
 Strand = Plus / Minus

                                                                            
Query: 30       acatcgaggnacgtgctgggaccggccgggttttccggcggcggagcgcctcccgggctc 89
                ||||||||| |||||||||| ||||||||| |  |||||||||| ||| |||| ||||||
Sbjct: 21603568 acatcgagg-acgtgctggggccggccgggatcgccggcggcggggcggctccggggctc 21603510

                                                                            
Query: 90       cgcctacctctctccactgtcgccgtcaagcccaagcg---caggccgtccaggctcgtg 146
                || || || ||| || | |||||||| |||||||||||    ||  |||||||| ||| |
Sbjct: 21603509 cgtctcccgctcgccgccgtcgccgtgaagcccaagcgtccgagatcgtccagggtcgcg 21603450

                                                          
Query: 147      cagacgcagccccagccagatgcccggatcccaggcacgcag 188
                ||||| | ||| ||||| || ||||||||||| || ||||||
Sbjct: 21603449 cagacccggccgcagcccgaggcccggatccccgggacgcag 21603408



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                           
Query: 185      gcagacgatatacgtcaagacattcgggtgctcacataaccag 227
                |||||||||||| || ||||| ||||||||||| |||||||||
Sbjct: 21603319 gcagacgatatatgtgaagacgttcgggtgctcgcataaccag 21603277
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>gb|BT013138.1| Lycopersicon esculentum clone 114440F, mRNA sequence
          Length = 2084

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 114/140 (81%)
 Strand = Plus / Plus

                                                                       
Query: 381 gcaaacaagccactggttgtagctggctgtgtgccacaaggaagccgggatctgaaggag 440
           ||||| |||||| |||| ||||| || ||||| || |||||||||||  ||||||| |||
Sbjct: 407 gcaaaaaagccattggtagtagcaggttgtgttcctcaaggaagccgtaatctgaaagag 466

                                                                       
Query: 441 cttgaaggtattagtataataggagtgcagcagatagatcgggttgttgaagtagttgag 500
           || |||||  |||||||| ||||||| |||||||| || || || ||||| || || || 
Sbjct: 467 ctggaaggagttagtatagtaggagttcagcagattgaccgtgtggttgaggttgtggaa 526

                               
Query: 501 gaaactttaaaagggcatga 520
           || ||||| ||||| |||||
Sbjct: 527 gagactttgaaaggtcatga 546



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 180 ggcacgcagacgatatacgtcaagacattcgggtgctcacataaccagagtga 232
           ||||| ||||| || ||| ||||||||||||| || || ||||| ||||||||
Sbjct: 206 ggcactcagactatttacatcaagacattcggatgttctcataatcagagtga 258
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>ref|NM_105867.2| Arabidopsis thaliana catalytic/ iron ion binding AT1G72090 mRNA,
           complete cds
          Length = 1976

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 124/155 (80%)
 Strand = Plus / Plus

                                                                       
Query: 177 ccaggcacgcagacgatatacgtcaagacattcgggtgctcacataaccagagtgacagt 236
           ||||| || |||||||||||| ||||||| || || || || ||||| |||||||| |||
Sbjct: 223 ccaggaactcagacgatatacatcaagacgtttggatgttctcataatcagagtgatagt 282

                                                                       
Query: 237 gagtacatgtcggggcagctctcggcgtttggatatgcaattactgaagagcctgaagga 296
           ||||| ||| | || ||||| || || ||||| |||||  | || ||||  || || | |
Sbjct: 283 gagtatatggctggtcagctttctgcatttggctatgcgttgacagaagtcccggaggaa 342

                                              
Query: 297 gctgatttgtggctaattaacacatgcactgtgaa 331
           |||||||| ||||| |||||||| || ||||||||
Sbjct: 343 gctgatttatggctcattaacacctgtactgtgaa 377
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>gb|AF367274.1|AF367274 Arabidopsis thaliana At1g72090/F28P5_4 mRNA, complete cds
          Length = 1977

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 124/155 (80%)
 Strand = Plus / Plus

                                                                       
Query: 177 ccaggcacgcagacgatatacgtcaagacattcgggtgctcacataaccagagtgacagt 236
           ||||| || |||||||||||| ||||||| || || || || ||||| |||||||| |||
Sbjct: 223 ccaggaactcagacgatatacatcaagacgtttggatgttctcataatcagagtgatagt 282

                                                                       
Query: 237 gagtacatgtcggggcagctctcggcgtttggatatgcaattactgaagagcctgaagga 296
           ||||| ||| | || ||||| || || ||||| |||||  | || ||||  || || | |
Sbjct: 283 gagtatatggctggtcagctttctgcatttggctatgcgttgacagaagtcccggaggaa 342

                                              
Query: 297 gctgatttgtggctaattaacacatgcactgtgaa 331
           |||||||| ||||| |||||||| || ||||||||
Sbjct: 343 gctgatttatggctcattaacacctgtactgtgaa 377
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>gb|BT002712.1| Arabidopsis thaliana At1g72090/F28P5_4 gene, complete cds
          Length = 1806

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 124/155 (80%)
 Strand = Plus / Plus

                                                                       
Query: 177 ccaggcacgcagacgatatacgtcaagacattcgggtgctcacataaccagagtgacagt 236
           ||||| || |||||||||||| ||||||| || || || || ||||| |||||||| |||
Sbjct: 181 ccaggaactcagacgatatacatcaagacgtttggatgttctcataatcagagtgatagt 240

                                                                       
Query: 237 gagtacatgtcggggcagctctcggcgtttggatatgcaattactgaagagcctgaagga 296
           ||||| ||| | || ||||| || || ||||| |||||  | || ||||  || || | |
Sbjct: 241 gagtatatggctggtcagctttctgcatttggctatgcgttgacagaagtcccggaggaa 300

                                              
Query: 297 gctgatttgtggctaattaacacatgcactgtgaa 331
           |||||||| ||||| |||||||| || ||||||||
Sbjct: 301 gctgatttatggctcattaacacctgtactgtgaa 335
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>ref|XM_590139.2| PREDICTED: Bos taurus similar to Troponin C-akin-1 protein
           (LOC512596), mRNA
          Length = 883

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 239 gtacatgtcggggcagctctcg 260
           ||||||||||||||||||||||
Sbjct: 364 gtacatgtcggggcagctctcg 343
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>ref|XM_418914.1| PREDICTED: Gallus gallus similar to CDK5 regulatory subunit
           associated protein 1-like 1 (LOC420823), mRNA
          Length = 2193

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 453 agtataataggagtgcagcagatagatcgggttgttgaagtagttgaggaaact 506
           ||||| ||||| || |||||||||||||| || || ||||| || |||||||||
Sbjct: 551 agtattataggggttcagcagatagatcgtgtagtagaagttgtggaggaaact 604
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 93      ctacctctctccactgtcgccg 114
               ||||||||||||||||||||||
Sbjct: 6305587 ctacctctctccactgtcgccg 6305608
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>ref|XM_001003747.1| PREDICTED: Mus musculus RIKEN cDNA 2010321M09 gene (2010321M09Rik),
           mRNA
          Length = 2827

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 393 ctggttgtagctggctgtgtgc 414
           ||||||||||||||||||||||
Sbjct: 420 ctggttgtagctggctgtgtgc 441
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>gb|BC024913.1| Mus musculus cDNA clone MGC:28004 IMAGE:3602181, complete cds
          Length = 2814

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 393 ctggttgtagctggctgtgtgc 414
           ||||||||||||||||||||||
Sbjct: 325 ctggttgtagctggctgtgtgc 346
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>dbj|AK169772.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430021H13
           product:Similar to hypothetical protein DKFZp564O1664
           (Hypothetical integrin A), full insert sequence
          Length = 2515

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 393 ctggttgtagctggctgtgtgc 414
           ||||||||||||||||||||||
Sbjct: 380 ctggttgtagctggctgtgtgc 401
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>dbj|AK168222.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched
           library, clone:I730069E04 product:Similar to
           hypothetical protein DKFZp564O1664 (Hypothetical
           integrin A), full insert sequence
          Length = 2467

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 393 ctggttgtagctggctgtgtgc 414
           ||||||||||||||||||||||
Sbjct: 323 ctggttgtagctggctgtgtgc 344
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>dbj|AK035654.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
           enriched library, clone:9530081M07 product:hypothetical
           Integrin A (or I) domain structure containing protein,
           full insert sequence
          Length = 2562

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 393 ctggttgtagctggctgtgtgc 414
           ||||||||||||||||||||||
Sbjct: 348 ctggttgtagctggctgtgtgc 369
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>dbj|AK032095.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330583L10 product:hypothetical
           Integrin A (or I) domain structure containing protein,
           full insert sequence
          Length = 2839

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 393 ctggttgtagctggctgtgtgc 414
           ||||||||||||||||||||||
Sbjct: 635 ctggttgtagctggctgtgtgc 656
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>dbj|AK086850.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
           library, clone:E030004K23 product:hypothetical protein,
           full insert sequence
          Length = 1561

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 393 ctggttgtagctggctgtgtgc 414
           ||||||||||||||||||||||
Sbjct: 333 ctggttgtagctggctgtgtgc 354
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>dbj|AK050654.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:C920029N22
           product:hypothetical protein, full insert sequence
          Length = 1800

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 393 ctggttgtagctggctgtgtgc 414
           ||||||||||||||||||||||
Sbjct: 627 ctggttgtagctggctgtgtgc 648
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>dbj|AK041578.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630022D24 product:Hypothetical integrin
           A homolog [Mus musculus], full insert sequence
          Length = 1266

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 393 ctggttgtagctggctgtgtgc 414
           ||||||||||||||||||||||
Sbjct: 336 ctggttgtagctggctgtgtgc 357
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>ref|XM_396696.2| PREDICTED: Apis mellifera similar to GA19679-PA (LOC413250),
           partial mRNA
          Length = 1002

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 453 agtataataggagtgcagcagatagatcgggttgttgaagtagttgaggaaactttaaaa 512
           ||||| ||||| ||||| || || ||||| || ||||||||||| || |||||| |||||
Sbjct: 666 agtatgataggcgtgcaacaaatcgatcgtgtggttgaagtagtcgaagaaactctaaaa 725

             
Query: 513 gg 514
           ||
Sbjct: 726 gg 727
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 93      ctacctctctccactgtcgccg 114
               ||||||||||||||||||||||
Sbjct: 6304800 ctacctctctccactgtcgccg 6304821
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>ref|NM_175153.2| Mus musculus RIKEN cDNA 2010321M09 gene (2010321M09Rik), mRNA
          Length = 2839

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 393 ctggttgtagctggctgtgtgc 414
           ||||||||||||||||||||||
Sbjct: 635 ctggttgtagctggctgtgtgc 656
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>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024O21,
              complete sequence
          Length = 155651

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 93     ctacctctctccactgtcgccg 114
              ||||||||||||||||||||||
Sbjct: 118795 ctacctctctccactgtcgccg 118816
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>gb|AC122463.4| Mus musculus BAC clone RP24-296C19 from 9, complete sequence
          Length = 162528

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 393   ctggttgtagctggctgtgtgc 414
             ||||||||||||||||||||||
Sbjct: 19416 ctggttgtagctggctgtgtgc 19437
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>gb|AC146720.23| Medicago truncatula clone mth2-17n5, complete sequence
          Length = 126477

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 494   agttgaggaaactttaaaagg 514
             |||||||||||||||||||||
Sbjct: 54828 agttgaggaaactttaaaagg 54848
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>gb|AC009695.7| Homo sapiens chromosome 8, clone RP11-130C12, complete sequence
          Length = 144328

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 495  gttgaggaaactttaaaaggg 515
            |||||||||||||||||||||
Sbjct: 2738 gttgaggaaactttaaaaggg 2758
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>gb|AC022716.13| Homo sapiens chromosome 8, clone RP11-135I5, complete sequence
          Length = 163495

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 495   gttgaggaaactttaaaaggg 515
             |||||||||||||||||||||
Sbjct: 18393 gttgaggaaactttaaaaggg 18373
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>emb|BX072559.10| Zebrafish DNA sequence from clone CH211-272F15 in linkage group 20,
             complete sequence
          Length = 156196

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 315   aacacatgcactgtgaaaaat 335
             |||||||||||||||||||||
Sbjct: 39696 aacacatgcactgtgaaaaat 39676
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>gb|AC164094.5| Mus musculus BAC clone RP23-133F10 from chromosome 6, complete sequence
          Length = 216271

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    gaagagcctgaaggagctga 301
              ||||||||||||||||||||
Sbjct: 190313 gaagagcctgaaggagctga 190332
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>gb|AC146277.2| Pan troglodytes BAC clone CH251-17J20 from X, complete sequence
          Length = 160219

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 503    aactttaaaagggcatgagg 522
              ||||||||||||||||||||
Sbjct: 151279 aactttaaaagggcatgagg 151298
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>gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, complete sequence
          Length = 180335

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 503   aactttaaaagggcatgagg 522
             ||||||||||||||||||||
Sbjct: 46854 aactttaaaagggcatgagg 46835
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>gb|AC144386.2| Pan troglodytes BAC clone CH251-313C12 from X, complete sequence
          Length = 202661

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 503    aactttaaaagggcatgagg 522
              ||||||||||||||||||||
Sbjct: 141609 aactttaaaagggcatgagg 141590
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>gb|AC161216.4| Mus musculus chromosome 7, clone RP23-8K23, complete sequence
          Length = 228889

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   cacatgcactgtgaaaaatc 336
             ||||||||||||||||||||
Sbjct: 84023 cacatgcactgtgaaaaatc 84042
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>gb|AC124563.4| Mus musculus BAC clone RP23-206B15 from chromosome 6, complete sequence
          Length = 210092

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 282    gaagagcctgaaggagctga 301
              ||||||||||||||||||||
Sbjct: 166937 gaagagcctgaaggagctga 166918
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>ref|XM_812477.1| Trypanosoma cruzi strain CL Brener tRNA modification enzyme
           (Tc00.1047053511511.20) partial mRNA
          Length = 1593

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 387 aagccactggttgtagctggctgtgtgccaca 418
           |||||||| ||||| ||||| |||||||||||
Sbjct: 346 aagccacttgttgtcgctggatgtgtgccaca 377
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>ref|XM_813979.1| Trypanosoma cruzi strain CL Brener tRNA modification enzyme
           (Tc00.1047053506941.20) partial mRNA
          Length = 1593

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 387 aagccactggttgtagctggctgtgtgccaca 418
           |||||||| ||||| ||||| |||||||||||
Sbjct: 346 aagccacttgttgtcgctggatgtgtgccaca 377
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>emb|Z68332.1|HSV775G11 Human DNA sequence from clone GHc-775G11 on chromosome X, complete
            sequence
          Length = 26568

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 503  aactttaaaagggcatgagg 522
            ||||||||||||||||||||
Sbjct: 7875 aactttaaaagggcatgagg 7894
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>emb|AL590069.5| Human DNA sequence from clone RP11-353J17 on chromosome X, complete
             sequence
          Length = 158828

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 503   aactttaaaagggcatgagg 522
             ||||||||||||||||||||
Sbjct: 83040 aactttaaaagggcatgagg 83021
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>gb|AC107980.8| Homo sapiens chromosome 15, clone CTD-3118D7, complete sequence
          Length = 141868

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   gctaattaacacatgcactg 327
             ||||||||||||||||||||
Sbjct: 98790 gctaattaacacatgcactg 98771
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>gb|AC160831.2| Xenopus tropicalis BAC clone ISB1-45G24 containing the 3' end of the
            MYT1 gene, complete sequence
          Length = 79158

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 428  ggatctgaaggagcttgaag 447
            ||||||||||||||||||||
Sbjct: 1848 ggatctgaaggagcttgaag 1829
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>gb|AE005987.1| Caulobacter crescentus CB15 section 313 of 359 of the complete genome
          Length = 10029

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   cgggttttccggcggcggag 75
            ||||||||||||||||||||
Sbjct: 1234 cgggttttccggcggcggag 1215
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 493     tagttgaggaaactttaaaa 512
               ||||||||||||||||||||
Sbjct: 9390612 tagttgaggaaactttaaaa 9390593
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>gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, complete sequence
          Length = 143516

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   gtagctggctgtgtgccaca 418
             ||||||||||||||||||||
Sbjct: 55030 gtagctggctgtgtgccaca 55049
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 140     gctcgtgcagacgcagccccagcc 163
               |||||||||||||||||| |||||
Sbjct: 6170772 gctcgtgcagacgcagccgcagcc 6170795
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>dbj|AP003044.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0038C05
          Length = 152941

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 493    tagttgaggaaactttaaaa 512
              ||||||||||||||||||||
Sbjct: 119022 tagttgaggaaactttaaaa 119003
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>gb|AC131315.16| Mus musculus chromosome 7, clone RP24-535I10, complete sequence
          Length = 213958

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    cacatgcactgtgaaaaatc 336
              ||||||||||||||||||||
Sbjct: 154770 cacatgcactgtgaaaaatc 154751
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>gb|AC002062.1|F20P5 Sequence of BAC F20P5 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 114505

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 489  gaagtagttgaggaaactttaaaa 512
            |||||||||||| |||||||||||
Sbjct: 2335 gaagtagttgagcaaactttaaaa 2358
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>gb|DQ278076.1| Haliotis rubra clone Hrub4.G05 microsatellite sequence
          Length = 340

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 485 tgttgaagtagttgaggaaa 504
           ||||||||||||||||||||
Sbjct: 46  tgttgaagtagttgaggaaa 27


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,108,559
Number of Sequences: 3902068
Number of extensions: 4108559
Number of successful extensions: 74312
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74113
Number of HSP's gapped (non-prelim): 199
length of query: 523
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 500
effective length of database: 17,143,297,704
effective search space: 8571648852000
effective search space used: 8571648852000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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