ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase ... 323 e-101
2RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase a... 306 7e-95
3RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase ... 307 2e-94
4RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase ... 313 1e-93
5RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase ... 310 1e-93
6RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase a... 303 3e-92
7RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase a... 302 3e-91
8RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase ... 303 4e-91
9RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase a... 300 6e-91
10RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase a... 303 2e-90
11RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase ... 298 5e-90
12RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase a... 300 1e-89
13RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase a... 296 3e-89
14RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase a... 291 6e-88
15RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase a... 288 8e-88
16RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase a... 271 4e-80
17RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase a... 217 1e-60
18RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase a... 218 4e-60
19PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteaso... 36 0.079
20CD48A_ARATH (P54609) Cell division control protein 48 homolog A ... 35 0.23
21PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Pro... 35 0.23
22PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (P... 35 0.23
23PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (P... 35 0.23
24RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase a... 34 0.30
25CD48B_ARATH (Q9ZPR1) Cell division control protein 48 homolog B ... 34 0.30
26CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E ... 34 0.39
27PEX6_PICAN (Q9UVU5) Peroxisomal biogenesis factor 6 (Peroxin-6) 34 0.39
28PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (P... 34 0.39
29PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog ... 33 0.67
30PRS6A_BRACM (O23894) 26S protease regulatory subunit 6A homolog ... 33 0.67
31PRS6A_ORYSA (P46465) 26S protease regulatory subunit 6A homolog ... 33 0.67
32PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4) 33 0.87
33PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteaso... 32 1.1
34TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER... 32 1.1
35TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER... 32 1.1
36TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (T... 32 1.1
37TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (T... 32 1.1
38RECA_IDILO (Q5QUB8) Protein recA (Recombinase A) 32 1.5
39PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteaso... 31 2.5
40MAGL2_HUMAN (Q9UJ55) MAGE-like protein 2 (Necdin-like protein 1)... 31 2.5
41CLPX_BIFLO (Q8G5R1) ATP-dependent Clp protease ATP-binding subun... 31 2.5
42FTSH_SHIFL (P0AAI4) Cell division protein ftsH (EC 3.4.24.-) 31 2.5
43FTSH_SALTY (P63343) Cell division protease ftsH (EC 3.4.24.-) 31 2.5
44FTSH_SALTI (P63344) Cell division protease ftsH (EC 3.4.24.-) 31 2.5
45FTSH_ECOLI (P0AAI3) Cell division protein ftsH (EC 3.4.24.-) 31 2.5
46FTSH_ECO57 (Q8X9L0) Cell division protease ftsH (EC 3.4.24.-) 31 2.5
47PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7 31 2.5
48TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase h... 31 2.5
49PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteaso... 31 2.5
50FILA_HUMAN (P20930) Filaggrin 31 3.3
51EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosin... 31 3.3
52MATK_ACOGR (Q9GHG8) Maturase K (Intron maturase) 31 3.3
53MATK_ACOCL (Q9GHG9) Maturase K (Intron maturase) 31 3.3
54EPHB6_HUMAN (O15197) Ephrin type-B receptor 6 precursor (Tyrosin... 31 3.3
55DTD_BURPS (Q63QX1) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) 31 3.3
56DTD_BURMA (Q62HB3) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) 31 3.3
57YMEL1_HUMAN (Q96TA2) ATP-dependent metalloprotease YME1L1 (EC 3.... 31 3.3
58YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3.... 31 3.3
59RECA_CHLTE (O52393) Protein recA (Recombinase A) 31 3.3
60PRS6A_ARATH (O04019) 26S protease regulatory subunit 6A homolog ... 30 4.3
61SCN1_LOLBL (Q05973) Sodium channel protein I, brain 30 4.3
62CP51_USTMA (P49602) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (... 30 4.3
63PEX6_PICPA (P33289) Peroxisomal biogenesis factor 6 (Peroxin-6) ... 30 4.3
64EPHB6_RAT (P0C0K7) Ephrin type-B receptor 6 precursor (Tyrosine-... 30 4.3
65EPHB6_MOUSE (O08644) Ephrin type-B receptor 6 precursor (Tyrosin... 30 4.3
66LU_HUMAN (P50895) Lutheran blood group glycoprotein precursor (B... 30 5.7
67CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 h... 30 5.7
68PNPT1_MOUSE (Q8K1R3) Polyribonucleotide nucleotidyltransferase 1... 30 5.7
69PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4 30 5.7
70AFG31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-) 30 5.7
71RECA_MYCGE (P47581) Protein recA (Recombinase A) 30 5.7
72PNPT1_PONPY (Q5RCW2) Polyribonucleotide nucleotidyltransferase 1... 30 7.4
73PNPT1_HUMAN (Q8TCS8) Polyribonucleotide nucleotidyltransferase 1... 30 7.4
74FTSH_RICPR (Q9ZEA2) Cell division protein ftsH homolog (EC 3.4.2... 30 7.4
75FTSH_RICCN (Q92JJ9) Cell division protein ftsH homolog (EC 3.4.2... 30 7.4
76FTSH_BACSU (P37476) Cell division protein ftsH homolog (EC 3.4.2... 30 7.4
77FTSH_BACPF (P94304) Cell division protein ftsH homolog (EC 3.4.2... 30 7.4
78TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (T... 30 7.4
79CIKS_HUMAN (O43734) Adapter protein CIKS (Connection to IKK and ... 30 7.4
80CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog 30 7.4
81CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Val... 29 9.7
82PRS7_XENLA (P46472) 26S protease regulatory subunit 7 (MSS1 prot... 29 9.7
83PRS7_RAT (Q63347) 26S protease regulatory subunit 7 (MSS1 protein) 29 9.7
84PRS7_MOUSE (P46471) 26S protease regulatory subunit 7 (MSS1 prot... 29 9.7
85PRS7_HUMAN (P35998) 26S protease regulatory subunit 7 (MSS1 prot... 29 9.7
86PEX6_DEBHA (Q6BS73) Peroxisomal biogenesis factor 6 (Peroxin-6) 29 9.7
87PTRA_SALTY (Q8ZMB5) Protease 3 precursor (EC 3.4.24.55) (Proteas... 29 9.7
88PTRA_SALTI (Q8Z418) Protease 3 precursor (EC 3.4.24.55) (Proteas... 29 9.7 
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  323 bits (829), Expect(2) = e-101
 Identities = 160/167 (95%), Positives = 160/167 (95%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           MGINPIM      LESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT
Sbjct: 172 MGINPIMMSA-GELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 230

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIADAPTNVQLPGMYNK ENPRVPIVVTGNDFSTLYAPLIRDGRM
Sbjct: 231 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRM 290

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA
Sbjct: 291 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 337



 Score = 66.6 bits (161), Expect(2) = e-101
 Identities = 32/37 (86%), Positives = 33/37 (89%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVYDDEVRKWVGSTGIENIGKRLVNSRD
Sbjct: 332 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRD 368
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>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  306 bits (785), Expect(2) = 7e-95
 Identities = 150/167 (89%), Positives = 157/167 (94%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           MGINPIM      LESGN GEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGT
Sbjct: 173 MGINPIMMSA-GELESGN-GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 230

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIAD PTNVQLPGMYNKE+NPRVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 231 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRM 290

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           EKFYWAPTRDDR+GVCKGIF+TDNV DE +VKIVD+FPGQSIDFFGA
Sbjct: 291 EKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGA 337



 Score = 60.8 bits (146), Expect(2) = 7e-95
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVYDDEVRKWV  TG+ENIGKRLVNSR+
Sbjct: 332 IDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSRE 368
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>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  307 bits (787), Expect(2) = 2e-94
 Identities = 151/167 (90%), Positives = 158/167 (94%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           MGINPIM      LESGN GEPAKLIRQRYREAAD+I KGKMCCLFINDLDAGAGRMGGT
Sbjct: 170 MGINPIMMSA-GELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGT 227

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 228 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 287

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           EKFYWAPTR+DRIGVCKGIF+TDNV DE+VV++VDTFPGQSIDFFGA
Sbjct: 288 EKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGA 334



 Score = 58.5 bits (140), Expect(2) = 2e-94
 Identities = 27/37 (72%), Positives = 30/37 (81%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVYDDEVRKWVG  G+ENI KRLVNSR+
Sbjct: 329 IDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSRE 365
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>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  313 bits (802), Expect(2) = 1e-93
 Identities = 151/167 (90%), Positives = 159/167 (95%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           MGINPIM      LESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGT
Sbjct: 182 MGINPIMMSA-GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 240

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIAD PTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           EKFYWAPTR+DRIGVCKGIF+TDNV+D+ +VK+VDTFPGQSIDFFGA
Sbjct: 301 EKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGA 347



 Score = 50.4 bits (119), Expect(2) = 1e-93
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVY DEVRKWV   G++ IGK+LVNS++
Sbjct: 342 IDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKE 378
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>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  310 bits (794), Expect(2) = 1e-93
 Identities = 150/167 (89%), Positives = 157/167 (94%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           MGINPIM      LESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGT
Sbjct: 182 MGINPIMMSA-GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 240

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIAD PTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           EKFYWAPTR+DRIGVCKGIF+TDNV +E +VK+VD FPGQSIDFFGA
Sbjct: 301 EKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGA 347



 Score = 53.1 bits (126), Expect(2) = 1e-93
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVYDDEVRKWV   G++ IGK+LVNS++
Sbjct: 342 IDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKE 378
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>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  303 bits (776), Expect(2) = 3e-92
 Identities = 147/167 (88%), Positives = 157/167 (94%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           MGINPIM      LESGNAGEPAKLIRQRYREAA++I+KG MCCLFINDLDAGAGRMGGT
Sbjct: 181 MGINPIMMSA-GELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGT 239

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIAD PTNVQLPGMYNK+EN RVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 240 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRM 299

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           EKFYWAPTR+DRIGVCKGIF+TDNV +E+VVKIVD+FPGQSIDFFGA
Sbjct: 300 EKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGA 346



 Score = 55.5 bits (132), Expect(2) = 3e-92
 Identities = 26/37 (70%), Positives = 30/37 (81%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVYDDEVRKWV  TGIE IG++L+NSRD
Sbjct: 341 IDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRD 377
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>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  302 bits (773), Expect(2) = 3e-91
 Identities = 146/167 (87%), Positives = 153/167 (91%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           MGINPIM      LESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGT
Sbjct: 182 MGINPIMMSA-GELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGT 240

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIAD PTNVQLPGMYNKEEN RVPI+ TGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRM 300

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           EKFYWAPTR+DRIGVCKGIF+TD + DE +V +VD FPGQSIDFFGA
Sbjct: 301 EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGA 347



 Score = 53.1 bits (126), Expect(2) = 3e-91
 Identities = 26/37 (70%), Positives = 30/37 (81%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVYDDEVRK+V S G+E IGKRLVNSR+
Sbjct: 342 IDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSRE 378
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>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  303 bits (775), Expect(2) = 4e-91
 Identities = 146/167 (87%), Positives = 157/167 (94%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           MGINPIM      LESGNAGEPAKLIRQRYREAA++I+KG +CCLFINDLDAGAGRMGGT
Sbjct: 186 MGINPIMMSA-GELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGT 244

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIAD PTNVQLPGMYNK+EN RVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 245 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRM 304

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           EKFYWAPTR+DRIGVCKGIF+TDNV +E+V+KIVDTFPGQSIDFFGA
Sbjct: 305 EKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGA 351



 Score = 52.0 bits (123), Expect(2) = 4e-91
 Identities = 25/37 (67%), Positives = 28/37 (75%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVYDDEVRKWV  TGIE IG +L+NS D
Sbjct: 346 IDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFD 382
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>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  300 bits (769), Expect(2) = 6e-91
 Identities = 146/167 (87%), Positives = 155/167 (92%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           MGI PIM      LESGNAGEPAKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMGGT
Sbjct: 178 MGITPIMMSA-GELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGT 236

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIAD PTNVQLPGMYNKE+NPRVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 237 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRM 296

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           EKFYWAPTR+DRIGVCKGIF+TD V +E VV++VDTFPGQSIDFFGA
Sbjct: 297 EKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGA 343



 Score = 53.9 bits (128), Expect(2) = 6e-91
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVYDDEVR+WV  TG+ENI ++LVNS++
Sbjct: 338 IDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKE 374
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>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  303 bits (775), Expect(2) = 2e-90
 Identities = 146/167 (87%), Positives = 155/167 (92%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           MGINPIM      LESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGR+GGT
Sbjct: 179 MGINPIMMSA-GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGT 237

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIAD PTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 238 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 297

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           +KFYWAPTR+DRIG+C GIF+TD V  E +VK+VDTFPGQSIDFFGA
Sbjct: 298 DKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGA 344



 Score = 49.7 bits (117), Expect(2) = 2e-90
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVYDDEVRKW    G+E IG+ LVNS++
Sbjct: 339 IDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKE 375
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>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  298 bits (764), Expect(2) = 5e-90
 Identities = 146/167 (87%), Positives = 153/167 (91%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           MGINPIM      LESGNAGEPAKLIRQRYREAA++I+KG MCCLFINDLDAGAGRMGGT
Sbjct: 186 MGINPIMMSA-GELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGT 244

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIAD PTNVQLPGMYNK+EN RVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 245 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRM 304

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           EKFYWAPTR+DRIGVC GIF+TDNV  E VVKIVD FPGQSIDFFGA
Sbjct: 305 EKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGA 351



 Score = 52.8 bits (125), Expect(2) = 5e-90
 Identities = 25/37 (67%), Positives = 28/37 (75%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVYDDEVRKWV  TGIE IG +L+NS D
Sbjct: 346 IDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFD 382
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>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  300 bits (767), Expect(2) = 1e-89
 Identities = 145/167 (86%), Positives = 153/167 (91%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           MGINPIM      LESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDLDAGAGR+GGT
Sbjct: 184 MGINPIMMSA-GELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGT 242

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIAD PTNVQLPGMYNKEEN RVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 243 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRM 302

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           EKFYWAPTRDDR+GVCKGIF+TD V +E + K+VDTFPGQSIDFFGA
Sbjct: 303 EKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGA 349



 Score = 50.1 bits (118), Expect(2) = 1e-89
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVYDDEVRKW+   G++  GK+LVNS++
Sbjct: 344 IDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKE 380
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>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  296 bits (758), Expect(2) = 3e-89
 Identities = 144/167 (86%), Positives = 155/167 (92%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           M I+PIM      LESGNAGEPAKLIRQRYREAAD+I+KGKMC LFINDLDAGAGR+GGT
Sbjct: 182 MRISPIMMSA-GELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGT 240

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIAD PTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           EKFYWAPTR+DRIGVC GIF++DNV+ E +VK+VDTFPGQSIDFFGA
Sbjct: 301 EKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGA 347



 Score = 52.4 bits (124), Expect(2) = 3e-89
 Identities = 22/37 (59%), Positives = 30/37 (81%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVYDDEVRKW+   G+++IGK+LVNS++
Sbjct: 342 IDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKE 378
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>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  291 bits (746), Expect(2) = 6e-88
 Identities = 141/167 (84%), Positives = 153/167 (91%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           MGINPIM      LESGNAGEPAKLIRQRYREA+D+IKKGKMC LFINDLDAGAGR+GGT
Sbjct: 186 MGINPIMMSA-GELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGT 244

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIAD PTNVQLPGMYNKE+N RVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 245 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRM 304

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           EKFYWAPTR+DRIGVCKGIF+TD V ++ +V++VD  PGQSIDFFGA
Sbjct: 305 EKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGA 351



 Score = 52.8 bits (125), Expect(2) = 6e-88
 Identities = 21/37 (56%), Positives = 30/37 (81%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVYDDEVRKW+   G++++GK+LVNS++
Sbjct: 346 IDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKE 382
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>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  288 bits (738), Expect(2) = 8e-88
 Identities = 141/167 (84%), Positives = 150/167 (89%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGT 201
           +GINPIM      LESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGGT
Sbjct: 180 LGINPIMMSA-GELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGT 238

Query: 202 TQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRM 381
           TQYTVNNQMVNATLMNIAD PTNVQLPGMYNK++N RVPI+VTGNDFSTLYAPLIRDGRM
Sbjct: 239 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRM 298

Query: 382 EKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           EKFYWAPTR+DRIGVC GIF+TD V  E VVK+VD FPGQSIDFFGA
Sbjct: 299 EKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGA 345



 Score = 55.5 bits (132), Expect(2) = 8e-88
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSRD 616
           + F   LRARVY DEVRKWV S G++N+GK+LVNS+D
Sbjct: 340 IDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKD 376
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>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  271 bits (693), Expect(2) = 4e-80
 Identities = 135/173 (78%), Positives = 145/173 (83%)
 Frame = +1

Query: 4   SLCSPXMGINPIMXECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGA 183
           +L    +GI PI+      LESGNAGEPAKLIR RYREA+D+IKKG+MC LFINDLDAGA
Sbjct: 149 ALAYKKLGIAPIVMSA-GELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGA 207

Query: 184 GRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPL 363
           GRMG TTQYTVNNQMVNATLMNIAD PTNVQLPG+Y  EE PRVPIV TGNDFSTLYAPL
Sbjct: 208 GRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPL 267

Query: 364 IRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           IRDGRMEK+YW PTR+DRIGVC GIFQ DNV    V  +VDTFPGQSIDFFGA
Sbjct: 268 IRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGA 320



 Score = 47.0 bits (110), Expect(2) = 4e-80
 Identities = 20/36 (55%), Positives = 28/36 (77%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNSR 613
           + F   LRARVYDD VR+W+  TG++ IG++LVN+R
Sbjct: 315 IDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNAR 350
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>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score =  217 bits (552), Expect(2) = 1e-60
 Identities = 107/155 (69%), Positives = 124/155 (80%), Gaps = 1/155 (0%)
 Frame = +1

Query: 61  LESGNAGEPAKLIRQRYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 237
           LES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR    TQYTVN Q+VNA
Sbjct: 66  LESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNA 125

Query: 238 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 417
           TLMNIAD PT+VQLPG Y+     RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P RD++
Sbjct: 126 TLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEK 185

Query: 418 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           +G+  GIF  D +S   V K+VD+FP QSIDFF A
Sbjct: 186 VGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSA 220



 Score = 36.6 bits (83), Expect(2) = 1e-60
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNS 610
           + F   LR+R+YD+++R ++   G EN+  R+VNS
Sbjct: 215 IDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNS 249
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>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score =  218 bits (556), Expect(2) = 4e-60
 Identities = 107/155 (69%), Positives = 124/155 (80%), Gaps = 1/155 (0%)
 Frame = +1

Query: 61  LESGNAGEPAKLIRQRYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 237
           LES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR    TQYTVN Q+VNA
Sbjct: 66  LESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNA 125

Query: 238 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 417
           TLMNIAD PT+VQLPG Y+     RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P RDD+
Sbjct: 126 TLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDK 185

Query: 418 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGA 522
           +G+  GIF  D +S   + ++VDTFP QSIDFF A
Sbjct: 186 VGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSA 220



 Score = 33.1 bits (74), Expect(2) = 4e-60
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 506 LTFSVLLRARVYDDEVRKWVGSTGIENIGKRLVNS 610
           + F   LR+R+YD ++R ++   G E I  R+VNS
Sbjct: 215 IDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNS 249
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>PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 407

 Score = 36.2 bits (82), Expect = 0.079
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 5/148 (3%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258
           GE AKL+R  ++ A    K+   C +FI+++DA A +   T   T  ++ V  TLM +  
Sbjct: 224 GEGAKLVRDVFKLA----KEKSPCIIFIDEIDAVASKR--TESLTGGDREVQRTLMQL-- 275

Query: 259 APTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKF--YWAPTRDDRIGVCK 432
                 L  M   +    V I+   N    L   ++R GR ++      P  D R+ + K
Sbjct: 276 ------LAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILK 329

Query: 433 GIFQTDN---VSDESVVKIVDTFPGQSI 507
              +  N   V    V KI +   G  +
Sbjct: 330 IHTEKMNLKGVDLREVAKIAENMVGADL 357
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>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)|
          Length = 809

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 13/153 (8%)
 Frame = +1

Query: 112 REAADMIKKGKMCCLFINDLDA-------GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 270
           RE  D  ++   C LF ++LD+       G+G  GG     V NQ++  T M+  +A   
Sbjct: 563 REIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLL--TEMDGMNAKKT 620

Query: 271 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYW--APTRDDRIGVCKGIFQ 444
           V + G  N+ +               + + L+R GR+++  +   P  D R+ + K   +
Sbjct: 621 VFIIGATNRPD--------------IIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALR 666

Query: 445 TDNVSDE----SVVKIVDTFPGQSIDFFGASAC 531
              ++ +    ++ K    F G  I      AC
Sbjct: 667 KSPIAKDVDIGALAKYTQGFSGADITEICQRAC 699
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>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMN 249
           G+  KL+R+ +R A +         +FI+++DA      GT +Y  N+   + +  T++ 
Sbjct: 261 GDGPKLVRELFRVAEEHAPS----IVFIDEIDAI-----GTKRYDSNSGGEREIQRTMLE 311

Query: 250 IADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVC 429
           + +     QL G  ++ +   V +++  N   TL   LIR GR+++    P  D++    
Sbjct: 312 LLN-----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK--TK 361

Query: 430 KGIFQ--------TDNVSDESVVKIVDTFPGQSI 507
           K IFQ         D+V+ + ++   D   G  I
Sbjct: 362 KRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADI 395
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>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMN 249
           G+  KL+R+ +R A +         +FI+++DA      GT +Y  N+   + +  T++ 
Sbjct: 261 GDGPKLVRELFRVAEEHAPS----IVFIDEIDAI-----GTKRYDSNSGGEREIQRTMLE 311

Query: 250 IADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVC 429
           + +     QL G  ++ +   V +++  N   TL   LIR GR+++    P  D++    
Sbjct: 312 LLN-----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK--TK 361

Query: 430 KGIFQ--------TDNVSDESVVKIVDTFPGQSI 507
           K IFQ         D+V+ + ++   D   G  I
Sbjct: 362 KRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADI 395
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>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMN 249
           G+  KL+R+ +R A +         +FI+++DA      GT +Y  N+   + +  T++ 
Sbjct: 261 GDGPKLVRELFRVAEEHAPS----IVFIDEIDAI-----GTKRYDSNSGGEREIQRTMLE 311

Query: 250 IADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVC 429
           + +     QL G  ++ +   V +++  N   TL   LIR GR+++    P  D++    
Sbjct: 312 LLN-----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK--TK 361

Query: 430 KGIFQ--------TDNVSDESVVKIVDTFPGQSI 507
           K IFQ         D+V+ + ++   D   G  I
Sbjct: 362 KRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADI 395
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>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +1

Query: 478 IVDTFPGQSIDFFGA 522
           +VDTFPGQSIDFFGA
Sbjct: 1   LVDTFPGQSIDFFGA 15
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>CD48B_ARATH (Q9ZPR1) Cell division control protein 48 homolog B (AtCDC48b)|
          Length = 603

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
 Frame = +1

Query: 73  NAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 252
           +AGE  K++R+ + EA+      K   +FI+++D    R     +  V       TLM+ 
Sbjct: 96  HAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD- 154

Query: 253 ADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKF--YWAPTRDDRIGV 426
           ++ P++            PRV +V + N    +   L R GR +       P  +DR+ +
Sbjct: 155 SNKPSS----------SAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKI 204
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>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)|
           (Transitional endoplasmic reticulum ATPase E)
          Length = 810

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 6/146 (4%)
 Frame = +1

Query: 112 REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 291
           RE  D  ++   C LF ++LD+ A + G +                 AD   N  L  M 
Sbjct: 563 REIFDKARQSAPCVLFFDELDSIATQRGNSA----------GDAGGAADRVLNQLLTEMD 612

Query: 292 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYW--APTRDDRIGVCKGIFQTDNVSDE 465
                  V I+   N    + + L+R GR+++  +   P  D R+ + K   +   V+ +
Sbjct: 613 GMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKD 672

Query: 466 ----SVVKIVDTFPGQSIDFFGASAC 531
               ++ K    F G  I      AC
Sbjct: 673 VDVTALAKYTQGFSGADITEICQRAC 698
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>PEX6_PICAN (Q9UVU5) Peroxisomal biogenesis factor 6 (Peroxin-6)|
          Length = 1135

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 6/152 (3%)
 Frame = +1

Query: 79   GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258
            GE    +R+ +++A D     K C +F ++LD+ A + G        NQ  +  +M+   
Sbjct: 888  GESEANVRRVFQKARD----AKPCVIFFDELDSVAPKRG--------NQGDSGGVMDRIV 935

Query: 259  APTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYW---APTRDDRIGVC 429
            +    +L GM   E    V +V   N    L   L+R GR +K  +   A T + +  + 
Sbjct: 936  SQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEKQAKII 995

Query: 430  KGI---FQTDNVSDESVVKIVDTFPGQSIDFF 516
            + +   FQ D   D   +     F     DF+
Sbjct: 996  QALTRKFQLDPSVDLGRIAETCPFTYTGADFY 1027
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>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 11/154 (7%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMN 249
           G+  KL+R+ +R A    ++     +FI+++DA      GT +Y  N+   + +  T++ 
Sbjct: 261 GDGPKLVRELFRVA----EEHGPSIVFIDEIDAI-----GTKRYDSNSGGEREIQRTMLE 311

Query: 250 IADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVC 429
           + +     QL G  ++ +   V +++  N   TL   LIR GR+++    P  D++    
Sbjct: 312 LLN-----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK--TK 361

Query: 430 KGIFQ--------TDNVSDESVVKIVDTFPGQSI 507
           K IFQ         D+V+ + ++   D   G  I
Sbjct: 362 KRIFQIHTSRMTLADDVTLDELIMAKDDLSGADI 395
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>PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1)
           (LEMA-1)
          Length = 423

 Score = 33.1 bits (74), Expect = 0.67
 Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 255
           G+ AKL+R    +A  + K+   C +FI+++DA G  R          ++ V  T++ + 
Sbjct: 246 GDGAKLVR----DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVS---GDREVQRTMLELL 298

Query: 256 DAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK--FYWAPTRDDRIGVC 429
           +     QL G      + R+ ++   N    L   L+R GR+++   +  PT + R  + 
Sbjct: 299 N-----QLDGF---SSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARIL 350

Query: 430 KGIFQTDNVSD----ESVVKIVDTFPGQSI 507
           +   +  NV+     E + +  D F G  +
Sbjct: 351 QIHSRKMNVNPDVNFEELARSTDDFNGAQL 380
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>PRS6A_BRACM (O23894) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 424

 Score = 33.1 bits (74), Expect = 0.67
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 255
           G+ AKL+R    +A  + K+   C +FI+++DA G  R          ++ V  T++ + 
Sbjct: 247 GDGAKLVR----DAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVS---GDREVQRTMLELL 299

Query: 256 DAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK--FYWAPTRDDRIGVC 429
           +     QL G  + E   R+ ++   N    L   L+R GR+++   +  PT + R  + 
Sbjct: 300 N-----QLDGFSSDE---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARIL 351

Query: 430 KGIFQTDN----VSDESVVKIVDTFPGQSI 507
           +   +  N    V+ E + +  D F G  +
Sbjct: 352 QIHSRKMNVHPDVNFEELARSTDDFNGAQL 381
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>PRS6A_ORYSA (P46465) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 429

 Score = 33.1 bits (74), Expect = 0.67
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 255
           G+ AKL+R    +A  + K+   C +FI+++DA G  R          ++ V  T++ + 
Sbjct: 252 GDGAKLVR----DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVS---GDREVQRTMLELL 304

Query: 256 DAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           +     QL G  + E   R+ ++   N    L   L+R GR+++
Sbjct: 305 N-----QLDGFSSDE---RIKVIAATNRADILDPALMRSGRLDR 340
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>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)|
          Length = 439

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMN 249
           G+  KL+R+ +R A +         +FI+++DA      GT +Y  N+   + +  T++ 
Sbjct: 260 GDGPKLVRELFRVAEEHAPS----IVFIDEIDAV-----GTKRYDSNSGGEREIQRTMLE 310

Query: 250 IADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 417
           + +     QL G  ++ +   V +++  N   TL   LIR GR+++    P  D++
Sbjct: 311 LLN-----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 358
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>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258
           GE A+L+R+ ++ A    K+     +FI++LDA A R   T   T  ++ V  T+M +  
Sbjct: 217 GEGARLVREVFQLA----KEKAPSIIFIDELDAIAARR--TNSDTSGDREVQRTMMQLL- 269

Query: 259 APTNVQLPGMYNKEENPRVPIVVTG--NDFSTLYAPLIRDGRMEKFYWA--PTRDDRIGV 426
                +L G      +PR  + V G  N    L   ++R GR ++      PT + RI +
Sbjct: 270 ----AELDGF-----DPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQI 320

Query: 427 CK 432
            K
Sbjct: 321 FK 322
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>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 6/146 (4%)
 Frame = +1

Query: 112 REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 291
           RE  D  ++   C LF ++LD+ A   GG                  AD   N  L  M 
Sbjct: 559 REIFDKARQAAPCVLFFDELDSIAKARGGNI----------GDGGGAADRVINQILTEMD 608

Query: 292 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSD- 462
                  V I+   N    +   ++R GR+++  + P  D+  R+ + K   +   V+  
Sbjct: 609 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 668

Query: 463 ---ESVVKIVDTFPGQSIDFFGASAC 531
              E + K+ + F G  +      AC
Sbjct: 669 VDLEFLAKMTNGFSGADLTEICQRAC 694
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>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 6/146 (4%)
 Frame = +1

Query: 112 REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 291
           RE  D  ++   C LF ++LD+ A   GG                  AD   N  L  M 
Sbjct: 559 REIFDKARQAAPCVLFFDELDSIAKARGGNI----------GDGGGAADRVINQILTEMD 608

Query: 292 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSD- 462
                  V I+   N    +   ++R GR+++  + P  D+  R+ + K   +   V+  
Sbjct: 609 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 668

Query: 463 ---ESVVKIVDTFPGQSIDFFGASAC 531
              E + K+ + F G  +      AC
Sbjct: 669 VDLEFLAKMTNGFSGADLTEICQRAC 694
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>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 6/146 (4%)
 Frame = +1

Query: 112 REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 291
           RE  D  ++   C LF ++LD+ A   GG                  AD   N  L  M 
Sbjct: 559 REIFDKARQAAPCVLFFDELDSIAKARGGNI----------GDGGGAADRVINQILTEMD 608

Query: 292 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSD- 462
                  V I+   N    +   ++R GR+++  + P  D+  R+ + K   +   V+  
Sbjct: 609 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 668

Query: 463 ---ESVVKIVDTFPGQSIDFFGASAC 531
              E + K+ + F G  +      AC
Sbjct: 669 VDLEFLAKMTNGFSGADLTEICQRAC 694
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>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 6/146 (4%)
 Frame = +1

Query: 112 REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 291
           RE  D  ++   C LF ++LD+ A   GG                  AD   N  L  M 
Sbjct: 559 REIFDKARQAAPCVLFFDELDSIAKARGGNI----------GDGGGAADRVINQILTEMD 608

Query: 292 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSD- 462
                  V I+   N    +   ++R GR+++  + P  D+  R+ + K   +   V+  
Sbjct: 609 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 668

Query: 463 ---ESVVKIVDTFPGQSIDFFGASAC 531
              E + K+ + F G  +      AC
Sbjct: 669 VDLEFLAKMTNGFSGADLTEICQRAC 694
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>RECA_IDILO (Q5QUB8) Protein recA (Recombinase A)|
          Length = 372

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 46  ECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYT 213
           E    +   + G  A+L+ Q  R+    IKK    C+FIN +    G M G  + T
Sbjct: 153 EIEGEMGDSHVGLQARLMSQALRKLTSNIKKSNTMCIFINQIRMKIGVMFGNPETT 208
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>PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 420

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 29/108 (26%), Positives = 53/108 (49%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258
           G+ +KL+R+ +    +M +K     +FI++LD+ A R    T  T  ++ V  TLM +  
Sbjct: 235 GDGSKLVREIF----EMARKKAPSIIFIDELDSIAARRLNET--TGADREVQRTLMQLL- 287

Query: 259 APTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAP 402
                ++ G ++K +N R  I+   N    L   ++R GR ++    P
Sbjct: 288 ----AEMDG-FDKRKNIR--IIAATNRPDVLDPAILRPGRFDRLVHVP 328
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>MAGL2_HUMAN (Q9UJ55) MAGE-like protein 2 (Necdin-like protein 1) (Protein nM15)|
          Length = 529

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
 Frame = -2

Query: 424 HRYGRHGWEPSRTSPYDHHGSEEXXXXXXXXXXXRWAHGGSPPCCTCQGAARWWGHR--R 251
           H    H W+  R  P+++    +            W H  +P     +G + W G    R
Sbjct: 181 HTLAFHDWQGPR--PWENLNLSDWEVQSPIQVSGDWEHPNTP-----RGLSGWEGPSTSR 233

Query: 250 CSSGWRSPSGC*RCTAWFRPS 188
             SGW  PS     +AW  PS
Sbjct: 234 ILSGWEGPSASWALSAWEGPS 254
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>CLPX_BIFLO (Q8G5R1) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 472

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
 Frame = +1

Query: 22  MGINPIMXECRXXLESGNAGEPAKLIRQRYREAAD-MIKKGKMCCLFINDLDAGAGRMGG 198
           M +  ++ +     E+G  G+  + + QR  +AAD  + + +   ++I+++D  A + G 
Sbjct: 171 MNVPFVITDATTLTEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGE 230

Query: 199 TTQYT--VNNQMVNATLMNIADAP-TNVQLPGMYNKEE 303
            T  T  V+ + V   L+ I +    +V L G    +E
Sbjct: 231 NTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKE 268
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>FTSH_SHIFL (P0AAI4) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +1

Query: 106 RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 270
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 271 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
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>FTSH_SALTY (P63343) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +1

Query: 106 RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 270
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 271 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
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>FTSH_SALTI (P63344) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +1

Query: 106 RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 270
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 271 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
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>FTSH_ECOLI (P0AAI3) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +1

Query: 106 RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 270
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 271 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
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>FTSH_ECO57 (Q8X9L0) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +1

Query: 106 RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 270
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 271 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
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>PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7|
          Length = 435

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 25/103 (24%), Positives = 49/103 (47%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258
           GE A+++R+ +    +M +  K C +F +++DA  G      Q   N   V  T++ + +
Sbjct: 253 GEGARMVRELF----EMARTKKACLIFFDEIDAVGGARFDDGQGGDNE--VQRTMLELIN 306

Query: 259 APTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
                QL G    +    + +++  N   TL   L+R GR+++
Sbjct: 307 -----QLDGF---DPRGNIKVLMATNRPDTLDPALMRPGRLDR 341
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>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1|
           (p97/CDC48 homolog 1)
          Length = 809

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
 Frame = +1

Query: 112 REAADMIKKGKMCCLFINDLDA-------GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 270
           R+  D  +    C LF ++LD+       GAG  GG     V NQ++  T M+  +A  N
Sbjct: 566 RDVFDKARAAAPCVLFFDELDSIAKARGGGAGGDGGGASDRVINQVL--TEMDGMNAKKN 623

Query: 271 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPL 363
           V + G  N+ +     ++  G     +Y PL
Sbjct: 624 VFIIGATNRPDIIDPAVLRPGRLDQLIYIPL 654
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>PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 421

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 29/108 (26%), Positives = 53/108 (49%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258
           G+ +KL+R+ +    +M +K     +FI++LD+ A R    T  T  ++ V  TLM +  
Sbjct: 235 GDGSKLVREIF----EMARKKAPSIIFIDELDSIAARRLNET--TGADREVQRTLMQLL- 287

Query: 259 APTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAP 402
                ++ G ++K +N R  I+   N    L   ++R GR ++    P
Sbjct: 288 ----AEMDG-FDKRKNIR--IIAATNRPDVLDPAILRPGRFDRLVHVP 328
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>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +3

Query: 174  RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPHQRAAPWHVQQG 299
            RW G   RNH  +   Q  DG RHP  H   R  H  +A    Q G
Sbjct: 3554 RWSGSASRNHRGSAQEQSRDGSRHPTSHHEDRAGHGHSAESSRQSG 3599



 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +3

Query: 174  RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPHQRAAPWHVQQG 299
            RW G   RNH  +   Q  DG RHP  H+  R  H  +A    Q G
Sbjct: 2906 RWSGSASRNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSG 2951



 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +3

Query: 174  RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPHQRAAPWHVQQG 299
            RW G   RNH  +   Q  DG RHP  H+  R  H  +A    Q G
Sbjct: 2582 RWSGSASRNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSG 2627



 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +3

Query: 174  RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPHQRAAPWHVQQG 299
            RW G   RNH  +   Q  DG RHP  H   R  H  +A    Q G
Sbjct: 1933 RWSGSASRNHLGSAWEQSRDGSRHPGSHHEDRAGHGHSADSSRQSG 1978



 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
 Frame = +3

Query: 174 RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPHQRAA 278
           RW G   RNH  +   Q  DG RHP  H   R  H  +A
Sbjct: 636 RWSGSASRNHHGSAQEQSRDGSRHPRSHHEDRAGHGHSA 674
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>EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6)
          Length = 1005

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -2

Query: 310 GGSPPCCTCQGAARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 185
           GGSPP   C G  +W    G  RC  G++   G   C A  R  Y
Sbjct: 262 GGSPPRLHCNGEGKWMVAVGGCRCQPGYQPARGDKACQACPRGLY 306
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>MATK_ACOGR (Q9GHG8) Maturase K (Intron maturase)|
          Length = 511

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
 Frame = -3

Query: 144 LTLLDHVCSLTVPLPDEL--------GWLSSVPTLQLLPALXHDGVDAHXWRT 10
           L+ L+HV  + +P P  L        GW+  VP+L LL    H   + H W +
Sbjct: 144 LSHLNHVSDILIPYPIHLEILVQVLQGWIQDVPSLHLLRFFLH---EFHNWNS 193
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>MATK_ACOCL (Q9GHG9) Maturase K (Intron maturase)|
          Length = 511

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
 Frame = -3

Query: 144 LTLLDHVCSLTVPLPDEL--------GWLSSVPTLQLLPALXHDGVDAHXWRT 10
           L+ L+HV  + +P P  L        GW+  VP+L LL    H   + H W +
Sbjct: 144 LSHLNHVSDILIPYPIHLEILVQVLQGWIQDVPSLHLLRFFLH---EFHNWNS 193
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>EPHB6_HUMAN (O15197) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6) (HEP)
          Length = 1006

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -2

Query: 310 GGSPPCCTCQGAARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 185
           GGSPP   C G  +W    G  RC  G++   G   C A  R  Y
Sbjct: 263 GGSPPRLHCNGEGKWMVAVGGCRCQPGYQPARGDKACQACPRGLY 307
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>DTD_BURPS (Q63QX1) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)|
          Length = 152

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
 Frame = +1

Query: 139 GKMCCLFINDLDAGAGRMGG---TTQYTV---NNQMVNATLMNIADAPTNVQLPGMYNKE 300
           GKM  L +++LD GAGR GG    +Q+T+    N  +  +    A      +L   + + 
Sbjct: 60  GKMN-LPVSNLD-GAGRAGGLLLVSQFTLAADTNSGLRPSFTPAAPPDEGERLFDYFVRR 117

Query: 301 ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTR 408
              R PIV TG   + +   L+ DG +   +W  TR
Sbjct: 118 ARERHPIVATGEFGADMQVSLVNDGPVT--FWLQTR 151
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>DTD_BURMA (Q62HB3) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)|
          Length = 152

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
 Frame = +1

Query: 139 GKMCCLFINDLDAGAGRMGG---TTQYTV---NNQMVNATLMNIADAPTNVQLPGMYNKE 300
           GKM  L +++LD GAGR GG    +Q+T+    N  +  +    A      +L   + + 
Sbjct: 60  GKMN-LPVSNLD-GAGRAGGLLLVSQFTLAADTNSGLRPSFTPAAPPDEGERLFDYFVRR 117

Query: 301 ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTR 408
              R PIV TG   + +   L+ DG +   +W  TR
Sbjct: 118 ARERHPIVATGEFGADMQVSLVNDGPVT--FWLQTR 151
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>YMEL1_HUMAN (Q96TA2) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1) (Meg-4) (Presenilin-associated metalloprotease)
           (PAMP)
          Length = 773

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 30/111 (27%), Positives = 43/111 (38%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258
           G  A  IR  +REA    K    C +FI++LD+  G+   +  +  + Q +N  L     
Sbjct: 414 GVGASRIRNLFREA----KANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAE--- 466

Query: 259 APTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRD 411
                    M   + N  V I+   N    L   LIR GR +     P  D
Sbjct: 467 ---------MDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPD 508
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>YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1)
          Length = 715

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 30/111 (27%), Positives = 43/111 (38%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258
           G  A  IR  +REA    K    C +FI++LD+  G+   +  +  + Q +N  L     
Sbjct: 356 GVGASRIRNLFREA----KANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAE--- 408

Query: 259 APTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRD 411
                    M   + N  V I+   N    L   LIR GR +     P  D
Sbjct: 409 ---------MDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPD 450
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>RECA_CHLTE (O52393) Protein recA (Recombinase A)|
          Length = 346

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 225
           G  A+L+ Q  R+    I K    CLFIN L    G M G+ + T   +
Sbjct: 178 GLQARLMSQALRKLTGAISKSSSVCLFINQLRDKIGVMYGSPETTTGGK 226
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>PRS6A_ARATH (O04019) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 419

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 255
           G+ AKL+R  +  A    K+   C +FI+++DA G  R          ++ V  T++ + 
Sbjct: 242 GDGAKLVRDAFLLA----KEKSPCIIFIDEIDAIGTKRFDSEVS---GDREVQRTMLELL 294

Query: 256 DAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           +     QL G      + R+ ++   N    L   L+R GR+++
Sbjct: 295 N-----QLDGF---SSDDRIKVIAATNRADILDPALMRSGRLDR 330
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>SCN1_LOLBL (Q05973) Sodium channel protein I, brain|
          Length = 1522

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 19/80 (23%), Positives = 38/80 (47%)
 Frame = -1

Query: 311 RGFSSLLYMPGSCTLVGASAMFIRVAFTIWLLTVYCVVPPILPAPASRSLMKRQHILPFL 132
           R   +L  +PG  T+V A    +R+  ++ +L ++C+            +  +  +  F 
Sbjct: 152 RALRTLSIIPGLKTMVNALLRALRMLISVLILILFCLW-----------IFSQAGVQLF- 199

Query: 131 IMSAASRYRCLMSLAGSPAF 72
               A R++C++ + GSPAF
Sbjct: 200 --GGALRHKCVLQIHGSPAF 217
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>CP51_USTMA (P49602) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (P450-LIA1)|
           (Sterol 14-alpha demethylase) (Lanosterol 14-alpha
           demethylase) (P450-14DM)
          Length = 561

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 168 IVDEEAAHLTLLDHVCSLTVPLPDELGWLSSVPTLQLLPAL 46
           +    +A  +LLD + +LT PL D   W+ ++  L LLP L
Sbjct: 2   VASSSSATASLLDQLFALT-PLADSSAWIKTITVLVLLPLL 41
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>PEX6_PICPA (P33289) Peroxisomal biogenesis factor 6 (Peroxin-6) (Peroxisome|
            biosynthesis protein PAS5)
          Length = 1165

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 28/111 (25%), Positives = 47/111 (42%)
 Frame = +1

Query: 79   GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258
            GE    +R+ ++ A D     K C +F ++LD+ A + G        NQ  +  +M+   
Sbjct: 894  GESEANVRKVFQRARD----AKPCVVFFDELDSVAPKRG--------NQGDSEGVMDRIV 941

Query: 259  APTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRD 411
            +    +L GM   +    V +V   N    L   L+R GR +K  +    D
Sbjct: 942  SQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSD 992
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>EPHB6_RAT (P0C0K7) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6)
          Length = 1013

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = -2

Query: 310 GGSPPCCTCQGAARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 185
           GGSPP   C G  RW    G  RC  G +   G   C A    SY
Sbjct: 272 GGSPPRLHCNGEGRWMVAVGGCRCQPGHQPARGDKLCQACPEGSY 316
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>EPHB6_MOUSE (O08644) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6) (MEP)
          Length = 1014

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = -2

Query: 310 GGSPPCCTCQGAARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 185
           GGSPP   C G  RW    G  RC  G +   G   C A    SY
Sbjct: 273 GGSPPRLHCNGEGRWMVAVGGCRCQPGHQPARGDKLCQACPEGSY 317
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>LU_HUMAN (P50895) Lutheran blood group glycoprotein precursor (B-CAM cell|
           surface glycoprotein) (Auberger B antigen) (F8/G253
           antigen)
          Length = 628

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 108 PLPDELGWLSSVPTLQLLPALXHDGV 31
           P+P   GW+SS  TL++  AL  DG+
Sbjct: 495 PIPGRQGWVSSSLTLKVTSALSRDGI 520
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>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D|
           (AtCDC48d) (Transitional endoplasmic reticulum ATPase D)
          Length = 815

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 6/146 (4%)
 Frame = +1

Query: 112 REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 291
           RE  D  ++   C LF ++LD+ A + G +                 AD   N  L  M 
Sbjct: 564 REIFDKARQSAPCVLFFDELDSIATQRGNSV----------GDAGGAADRVLNQLLTEMD 613

Query: 292 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSDE 465
                  V I+   N    +   L+R GR+++  + P  D+  R  + K   +   V+ +
Sbjct: 614 GMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKD 673

Query: 466 ----SVVKIVDTFPGQSIDFFGASAC 531
               ++ K    F G  I      +C
Sbjct: 674 VDLRALAKYTQGFSGADITEICQRSC 699
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>PNPT1_MOUSE (Q8K1R3) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -3

Query: 474 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 340
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAI-QQASVAKKE 584

Query: 339 IV 334
           I+
Sbjct: 585 IL 586
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>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4|
          Length = 443

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMN 249
           G+  K++R+ +R A    ++     +FI+++DA      GT +Y  N+   + +  T++ 
Sbjct: 264 GDGPKMVRELFRVA----EENAPSIVFIDEIDAV-----GTKRYDSNSGGEREIQRTMLE 314

Query: 250 IADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 417
           + +     QL G  ++ +   V +++  N   +L   LIR GR+++    P  D++
Sbjct: 315 LLN-----QLDGFDSRGD---VKVLMATNRIESLDPALIRPGRIDRKIEFPLPDEK 362
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>AFG31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-)|
          Length = 663

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
 Frame = +1

Query: 106 RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQY--TVNNQMVNATLMNIADAP 264
           R R+   M +K   C LFI+++DA     G G +GG ++   T+N  +V    M+  ++ 
Sbjct: 254 RVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVE---MDGFNSS 310

Query: 265 TNV 273
           TNV
Sbjct: 311 TNV 313
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>RECA_MYCGE (P47581) Protein recA (Recombinase A)|
          Length = 340

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +1

Query: 46  ECRXXLESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 225
           E    +E    G  A+++ +  R    ++   K C LFIN L    G M G  + T   +
Sbjct: 155 ELEGTIEEQTIGLHARMMSKGLRRIQSILPDSKTCVLFINQLREKPGVMFGNNEVTTGGK 214
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>PNPT1_PONPY (Q5RCW2) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1)
          Length = 783

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -3

Query: 474 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 340
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAI-QQASVAKKE 584

Query: 339 IV 334
           I+
Sbjct: 585 IL 586
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>PNPT1_HUMAN (Q8TCS8) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -3

Query: 474 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 340
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAI-QQASVAKKE 584

Query: 339 IV 334
           I+
Sbjct: 585 IL 586
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>FTSH_RICPR (Q9ZEA2) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +1

Query: 106 RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 270
           R R+  +  K+   C +FI+++DA     G G  GG  +     Q +N  L         
Sbjct: 235 RVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDE---REQTLNQML--------- 282

Query: 271 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           V++ G    E N  V I+   N    L   L+R GR ++
Sbjct: 283 VEMDGF---EANEGVVIIAATNRPDVLDRALLRPGRFDR 318
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>FTSH_RICCN (Q92JJ9) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +1

Query: 106 RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 270
           R R+  +  K+   C +FI+++DA     G G  GG  +     Q +N  L         
Sbjct: 235 RVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDE---REQTLNQML--------- 282

Query: 271 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           V++ G    E N  V I+   N    L   L+R GR ++
Sbjct: 283 VEMDGF---EANEGVVIIAATNRPDVLDRALLRPGRFDR 318
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>FTSH_BACSU (P37476) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +1

Query: 106 RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 270
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 241 RVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQLL--------- 288

Query: 271 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           V++ G      N  + I+   N    L   L+R GR ++
Sbjct: 289 VEMDGF---SANEGIIIIAATNRADILDPALLRPGRFDR 324
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>FTSH_BACPF (P94304) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 679

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +1

Query: 106 RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 270
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 246 RVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQLL--------- 293

Query: 271 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           V++ G      N  + I+   N    L   L+R GR ++
Sbjct: 294 VEMDGF---SANEGIIIIAATNRADILDPALLRPGRFDR 329
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>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit)
          Length = 805

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 6/146 (4%)
 Frame = +1

Query: 112 REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 291
           RE  D  ++   C LF ++LD+ A   GG                  AD   N  L  M 
Sbjct: 560 REIFDKARQAAPCVLFFDELDSIAKARGGNI----------GDGGGAADRVINQILTEMD 609

Query: 292 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQ----TDN 453
                  V I+   N    +   ++R GR+++  + P  D+  R+ + K   +      +
Sbjct: 610 GMSIKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMAILKANLRKSPVAKD 669

Query: 454 VSDESVVKIVDTFPGQSIDFFGASAC 531
           V  + + K+ + F G  +      AC
Sbjct: 670 VDVDFLAKMTNGFSGADLTEICQRAC 695
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>CIKS_HUMAN (O43734) Adapter protein CIKS (Connection to IKK and SAPK/JNK)|
           (TRAF3-interacting protein 2) (Nuclear factor NF-kappa-B
           activator 1) (ACT1)
          Length = 574

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 602 PASCQCSRFR*SRPTCAPHRRTPEHAEAPKKSMDCPGKV 486
           PA   CS     R    PH + P  A AP +S++CP ++
Sbjct: 336 PAQRDCSFPGLPRHQDQPHHQPPNRAGAPGESLECPAEL 374
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>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog|
          Length = 805

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 24/101 (23%), Positives = 40/101 (39%)
 Frame = +1

Query: 112 REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 291
           RE  D  ++   C LF ++LD+ A + G +          +      AD   N  L  M 
Sbjct: 564 REIFDKARQSAPCVLFFDELDSIATQRGSS----------SGDAGGAADRVLNQLLTEMD 613

Query: 292 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD 414
                  V I+   N    +   L+R GR+++  + P  D+
Sbjct: 614 GMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDE 654
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>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing|
           protein homolog) (VCP)
          Length = 807

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 24/101 (23%), Positives = 39/101 (38%)
 Frame = +1

Query: 112 REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 291
           RE  D  ++   C LF ++LD+ A + G +                 AD   N  L  M 
Sbjct: 564 REIFDKARQSAPCVLFFDELDSIATQRGSSV----------GDAGGAADRVLNQLLTEMD 613

Query: 292 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD 414
                  V I+   N    +   L+R GR+++  + P  D+
Sbjct: 614 GMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDE 654
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>PRS7_XENLA (P46472) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 433

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGR-----MGGTTQYTVNNQMVNATL 243
           GE A+++R+ +    +M +  K C +F +++DA  G       GG  +       V  T+
Sbjct: 251 GEGARMVRELF----EMARTKKACLIFFDEIDAIGGARFDDGAGGDNE-------VQRTM 299

Query: 244 MNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           + + +     QL G    +    + +++  N   TL   L+R GR+++
Sbjct: 300 LELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALMRPGRLDR 339
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>PRS7_RAT (Q63347) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGR-----MGGTTQYTVNNQMVNATL 243
           GE A+++R+ +    +M +  K C +F +++DA  G       GG  +       V  T+
Sbjct: 250 GEGARMVRELF----EMARTKKACLIFFDEIDAIGGARFDDGAGGDNE-------VQRTM 298

Query: 244 MNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           + + +     QL G    +    + +++  N   TL   L+R GR+++
Sbjct: 299 LELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALMRPGRLDR 338
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>PRS7_MOUSE (P46471) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGR-----MGGTTQYTVNNQMVNATL 243
           GE A+++R+ +    +M +  K C +F +++DA  G       GG  +       V  T+
Sbjct: 250 GEGARMVRELF----EMARTKKACLIFFDEIDAIGGARFDDGAGGDNE-------VQRTM 298

Query: 244 MNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           + + +     QL G    +    + +++  N   TL   L+R GR+++
Sbjct: 299 LELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALMRPGRLDR 338
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>PRS7_HUMAN (P35998) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
 Frame = +1

Query: 79  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGR-----MGGTTQYTVNNQMVNATL 243
           GE A+++R+ +    +M +  K C +F +++DA  G       GG  +       V  T+
Sbjct: 250 GEGARMVRELF----EMARTKKACLIFFDEIDAIGGARFDDGAGGDNE-------VQRTM 298

Query: 244 MNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 387
           + + +     QL G    +    + +++  N   TL   L+R GR+++
Sbjct: 299 LELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALMRPGRLDR 338
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>PEX6_DEBHA (Q6BS73) Peroxisomal biogenesis factor 6 (Peroxin-6)|
          Length = 1198

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
 Frame = +1

Query: 79   GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258
            GE    +R+ +++A D     K C +F ++LD+ A + G        NQ  +  +M+   
Sbjct: 914  GESEANVRRVFQKARD----AKPCVIFFDELDSVAPKRG--------NQGDSGGVMDRIV 961

Query: 259  APTNVQLPGMYNKEENPRVPIVVTG--NDFSTLYAPLIRDGRMEKFYWAPTRD 411
            +    +L GM    E     + V G  N    L   L+R GR +K  +    D
Sbjct: 962  SQLLAELDGMSGGAEGGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISD 1014
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>PTRA_SALTY (Q8ZMB5) Protease 3 precursor (EC 3.4.24.55) (Protease III)|
           (Pitrilysin) (Protease pi)
          Length = 962

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 444 LEDTLADTDTVVTGGSPVELLHTTITDQRSVERREIV 334
           +E   AD+D +V G S V  +  T+TD+    R E+V
Sbjct: 333 VEGISADSDPIVNGNSGVFAISATLTDKGLANRDEVV 369
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>PTRA_SALTI (Q8Z418) Protease 3 precursor (EC 3.4.24.55) (Protease III)|
           (Pitrilysin) (Protease pi)
          Length = 962

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 444 LEDTLADTDTVVTGGSPVELLHTTITDQRSVERREIV 334
           +E   AD+D +V G S V  +  T+TD+    R E+V
Sbjct: 333 VEGISADSDPIVNGNSGVFAISATLTDKGLANRDEVV 369


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,870,591
Number of Sequences: 219361
Number of extensions: 1993594
Number of successful extensions: 6183
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 5875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6174
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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