ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8p22 |
|---|---|
| Clone Library Name | barley_pub |
>RL13A_LUPLU (O49885) 60S ribosomal protein L13a| Length = 205 Score = 103 bits (257), Expect = 2e-22 Identities = 50/77 (64%), Positives = 59/77 (76%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +VLRLQ GH+YCLLGQLS EVGWNY DTI V Y+R+KQL KLRVKAE+ Sbjct: 129 KVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQV 188 Query: 201 AEEKLGTQLEILAPIKY 251 A+EKLG+QL+ILAP+KY Sbjct: 189 AQEKLGSQLDILAPVKY 205
>R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4| Length = 206 Score = 102 bits (255), Expect = 3e-22 Identities = 50/77 (64%), Positives = 58/77 (75%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +VLRLQ GH+YCLLG+LS EVGWN+ DTI V Y+R+KQL KLRVKAEK Sbjct: 130 KVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKV 189 Query: 201 AEEKLGTQLEILAPIKY 251 AEEKLG QL+ILAP+KY Sbjct: 190 AEEKLGAQLDILAPVKY 206
>R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3| Length = 206 Score = 100 bits (249), Expect = 2e-21 Identities = 47/77 (61%), Positives = 58/77 (75%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +VLRLQ GH+YCLLG+LS EVGWN+ DTI V Y+R+KQL KLR KAEK Sbjct: 130 KVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKV 189 Query: 201 AEEKLGTQLEILAPIKY 251 AEE+LG+QL++LAP+KY Sbjct: 190 AEERLGSQLDVLAPVKY 206
>R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1| Length = 206 Score = 100 bits (249), Expect = 2e-21 Identities = 47/77 (61%), Positives = 58/77 (75%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +VLRLQ GH+YCLLG+LS EVGWN+ DTI Y+R+KQL+KLR KAEK Sbjct: 130 KVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKV 189 Query: 201 AEEKLGTQLEILAPIKY 251 AEEKLG+QL++LAP+KY Sbjct: 190 AEEKLGSQLDVLAPVKY 206
>R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2| Length = 206 Score = 97.4 bits (241), Expect = 1e-20 Identities = 47/77 (61%), Positives = 56/77 (72%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +VLRLQ GH+YCLLG+LS EVGWN+ DTI Y+R+KQL KLR KAEK Sbjct: 130 KVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKV 189 Query: 201 AEEKLGTQLEILAPIKY 251 AEEKLG+QL++LA IKY Sbjct: 190 AEEKLGSQLDVLASIKY 206
>RL13A_PICMA (O65055) 60S ribosomal protein L13a| Length = 206 Score = 94.4 bits (233), Expect = 1e-19 Identities = 45/77 (58%), Positives = 58/77 (75%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +VLRLQPGH+YCLLG+LSKEVGW++ DTI VSY+RRKQLAKLR KA + Sbjct: 130 KVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVEL 189 Query: 201 AEEKLGTQLEILAPIKY 251 AE++L ++E+LA +KY Sbjct: 190 AEKQLAPEMELLASLKY 206
>RL13A_CAEEL (Q27389) 60S ribosomal protein L13a| Length = 202 Score = 56.2 bits (134), Expect = 3e-08 Identities = 25/82 (30%), Positives = 45/82 (54%) Frame = +3 Query: 6 HSRRAQVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRV 185 H+ A RLQP ++C++G+LS EVGW + D + ++++K++ KL V Sbjct: 120 HAPSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAV 179 Query: 186 KAEKAAEEKLGTQLEILAPIKY 251 +A+K A K+ +I+ + Y Sbjct: 180 QAKKNAAPKIAQYQKIIEALGY 201
>RL13A_CYAPA (P93099) 60S ribosomal protein L13a| Length = 200 Score = 55.5 bits (132), Expect = 6e-08 Identities = 25/64 (39%), Positives = 36/64 (56%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +VLRL+PG ++C+LG+L+ EVGW ++D + Y R+K L LR KA A Sbjct: 124 RVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVA 183 Query: 201 AEEK 212 K Sbjct: 184 VASK 187
>RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a| Length = 202 Score = 55.1 bits (131), Expect = 8e-08 Identities = 26/72 (36%), Positives = 41/72 (56%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +V+RL+P ++ LG+L+ EVGW Y + Y ++KQL +LR +AEK Sbjct: 124 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKN 183 Query: 201 AEEKLGTQLEIL 236 E+K+G E+L Sbjct: 184 IEKKIGKFTEVL 195
>RL16_NEUCR (Q9P720) 60S ribosomal protein L16| Length = 202 Score = 54.7 bits (130), Expect = 1e-07 Identities = 24/62 (38%), Positives = 37/62 (59%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +VLRLQPG ++C +G+LS EVGW Y D + Y+R+K A+ +A+K+ Sbjct: 127 RVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKS 186 Query: 201 AE 206 A+ Sbjct: 187 AK 188
>RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a| Length = 202 Score = 53.9 bits (128), Expect = 2e-07 Identities = 25/72 (34%), Positives = 40/72 (55%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +V+RL+P ++ LG+L+ EVGW Y + Y ++KQL +LR +AEK Sbjct: 124 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKN 183 Query: 201 AEEKLGTQLEIL 236 E+K+ E+L Sbjct: 184 VEKKIDKYTEVL 195
>RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly basic protein)| Length = 202 Score = 53.5 bits (127), Expect = 2e-07 Identities = 25/72 (34%), Positives = 40/72 (55%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +V+RL+P ++ LG+L+ EVGW Y + Y ++KQL +LR +AEK Sbjct: 124 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKN 183 Query: 201 AEEKLGTQLEIL 236 E+K+ E+L Sbjct: 184 VEKKIDKYTEVL 195
>RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a| Length = 202 Score = 52.4 bits (124), Expect = 5e-07 Identities = 24/72 (33%), Positives = 40/72 (55%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +V+RL+P ++ LG+L+ EVGW Y + Y ++KQL +LR +AEK Sbjct: 124 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKN 183 Query: 201 AEEKLGTQLEIL 236 E+K+ ++L Sbjct: 184 VEKKIDKYTQVL 195
>RL13A_RAT (P35427) 60S ribosomal protein L13a| Length = 202 Score = 52.0 bits (123), Expect = 7e-07 Identities = 25/72 (34%), Positives = 40/72 (55%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +V+RL+P ++ LG+L+ EVGW Y + Y ++KQL +LR +AEK Sbjct: 124 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKN 183 Query: 201 AEEKLGTQLEIL 236 E+K+ E+L Sbjct: 184 VEKKICKFTEVL 195
>RL13A_MOUSE (P19253) 60S ribosomal protein L13a (Transplantation antigen P198)| (Tum-P198 antigen) Length = 202 Score = 50.4 bits (119), Expect = 2e-06 Identities = 24/72 (33%), Positives = 40/72 (55%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +V+RL+P ++ LG+L+ EVGW Y + Y ++KQ+ +LR +AEK Sbjct: 124 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKN 183 Query: 201 AEEKLGTQLEIL 236 E+K+ E+L Sbjct: 184 VEKKICKFTEVL 195
>RL16A_SCHPO (O42848) 60S ribosomal protein L16-A| Length = 197 Score = 47.0 bits (110), Expect = 2e-05 Identities = 24/70 (34%), Positives = 36/70 (51%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +VLRL+PG +YC +G+LS EVGW Y+D + Y + K + ++ + KA Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFY-QAKLAKQKKIASAKA 184 Query: 201 AEEKLGTQLE 230 A G E Sbjct: 185 ASSVNGKLAE 194
>RL13A_DROME (Q9VNE9) 60S ribosomal protein L13A| Length = 205 Score = 46.6 bits (109), Expect = 3e-05 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAE-- 194 +VL L+ +YC +G+LS EVGW+Y D I V+ ++L KL VKA Sbjct: 127 RVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKAREN 186 Query: 195 --KAAE 206 KAAE Sbjct: 187 IAKAAE 192
>RL16B_SCHPO (O42991) 60S ribosomal protein L16-B| Length = 197 Score = 45.8 bits (107), Expect = 5e-05 Identities = 24/70 (34%), Positives = 38/70 (54%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +VLRL+PG +YC +G+LS EVGW Y D + +RRK + +A+ A Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLE-----------ERRKVKSAAFYQAKLA 174 Query: 201 AEEKLGTQLE 230 ++K+ + E Sbjct: 175 KQKKIASAKE 184
>RL16A_YEAST (P26784) 60S ribosomal protein L16-A (L13A) (RP22)| Length = 198 Score = 45.4 bits (106), Expect = 6e-05 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAE-K 197 +VLRL+PG +Y LG+LS VGW Y D + Y +++ K A Sbjct: 124 RVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANAT 183 Query: 198 AAEEKLGTQLEIL 236 AAE + QL L Sbjct: 184 AAESDVAKQLAAL 196
>RL16B_YEAST (P26785) 60S ribosomal protein L16-B (YL15) (RP23)| Length = 197 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/63 (34%), Positives = 30/63 (47%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +VLRL+PG +Y LG+LS VGW Y D + Y +++ K A A Sbjct: 123 RVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAA 182 Query: 201 AEE 209 A E Sbjct: 183 ASE 185
>RL13A_SALTR (Q91487) 60S ribosomal protein L13a (Transplantation antigen P198| homolog) (Fragment) Length = 189 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/72 (29%), Positives = 35/72 (48%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTIXXXXXXXXXXXXVSYDRRKQLAKLRVKAEKA 200 +++RL+P ++ LLG+L+ EVGW Y + Y ++K + KL AEK Sbjct: 111 KIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKN 170 Query: 201 AEEKLGTQLEIL 236 E + +L Sbjct: 171 VESTISKYTAVL 182
>RL16C_SCHPO (O43004) 60S ribosomal protein L16-C| Length = 197 Score = 41.2 bits (95), Expect = 0.001 Identities = 15/29 (51%), Positives = 22/29 (75%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTI 107 +VLRL+P +YC +G+LS EVGW Y + + Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIV 154
>RL13A_SPOFR (Q962U0) 60S ribosomal protein L13A| Length = 204 Score = 39.7 bits (91), Expect = 0.003 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTI 107 +V L+PG +YC +G+LS EVGW Y D + Sbjct: 127 RVFCLKPGRKYCHVGRLSHEVGWKYRDVV 155
>RL13A_CHOPR (Q8MUR4) 60S ribosomal protein L13A| Length = 204 Score = 38.1 bits (87), Expect = 0.010 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +3 Query: 21 QVLRLQPGHRYCLLGQLSKEVGWNYADTI 107 +V L+PG +YC +G+LS EVGW Y + + Sbjct: 127 RVFCLKPGRKYCHVGRLSHEVGWKYREVV 155
>CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor| Length = 677 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%) Frame = +2 Query: 164 AAGEAPRQGREGSRGEVGNSA--GDPGP 241 A GE +QG++G +G+VG S G PGP Sbjct: 198 ALGEPGQQGKQGPKGDVGVSGEQGVPGP 225
>SLU7_KLULA (Q6CK06) Pre-mRNA-splicing factor SLU7| Length = 341 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +2 Query: 182 RQGREGSRGEVGNSAGDPGPDQILREIRAFVRHQFW 289 R+G G+RG G S G PG ++ I F++++ W Sbjct: 2 RRGNSGARGNRGGSRGKPGQNE---HIPNFIKNKPW 34
>SFTPD_BOVIN (P35246) Pulmonary surfactant-associated protein D precursor (SP-D)| (PSP-D) Length = 369 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/24 (58%), Positives = 15/24 (62%) Frame = +2 Query: 170 GEAPRQGREGSRGEVGNSAGDPGP 241 G R GREG RGE G+ G PGP Sbjct: 49 GRDGRDGREGPRGEKGD-PGSPGP 71 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,838,921 Number of Sequences: 219361 Number of extensions: 785096 Number of successful extensions: 2222 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2138 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2220 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
