ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8p22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY846823.1| Triticum aestivum ribosomal protein L13a mRNA, complete cds Length = 666 Score = 458 bits (231), Expect = e-126 Identities = 270/282 (95%), Gaps = 1/282 (0%) Strand = Plus / Plus Query: 1 atggtcattcccgacgcgctcaag-ttctgaggctgcagcctgggcacaggtactgcctn 59 |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 385 atggtcatccccgacgcgctcaaggttctgaggctgcagcctgggcacaggtactgcctc 444 Query: 60 ctgggccagctctccaaggaggtcggatggaactacgccgacaccatcagggagctggag 119 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 ctcggccagctctccaaggaggtcggatggaactacgccgacaccatcagggagctggag 504 Query: 120 gaaaagaggaaggagaaggccaaggtctcgtacgacaggagaaagcagctggcgaagctc 179 |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 505 gaaaagagaaaggagaaggccaaggtctcctacgacaggagaaagcaactggcgaagctc 564 Query: 180 cgcgtcaaggccgagaaggcagccgaggagaagttgggaactcagctggagatcctggcc 239 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct: 565 cgcgtcaaggccgagaaggcggccgaggagaagttgggaactcagctggagatcctagcc 624 Query: 240 ccgatcaaatactaagagagatcagagcttttgtgcgccatc 281 |||||||||||||||||||||| ||||||| |||||||||| Sbjct: 625 ccgatcaaatactaagagagattagagcttccgtgcgccatc 666
>ref|XM_469814.1| Oryza sativa (japonica cultivar-group), mRNA Length = 935 Score = 281 bits (142), Expect = 9e-73 Identities = 226/253 (89%), Gaps = 1/253 (0%) Strand = Plus / Plus Query: 1 atggtcattcccgacgcgctcaag-ttctgaggctgcagcctgggcacaggtactgcctn 59 |||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 440 atggtcatccccgacgcgctcaaggttctgaggctgcagcctgggcacaagtactgcctc 499 Query: 60 ctgggccagctctccaaggaggtcggatggaactacgccgacaccatcagggagctggag 119 || |||||||||||||||||||| || ||||||||| ||||||||||||||||| ||| Sbjct: 500 ctcggccagctctccaaggaggttggctggaactactatgacaccatcagggagcttgag 559 Query: 120 gaaaagaggaaggagaaggccaaggtctcgtacgacaggagaaagcagctggcgaagctc 179 || ||||||||||||||||||||||| | || |||||||| ||||| ||||||||||| Sbjct: 560 gagaagaggaaggagaaggccaaggttgcctatgacaggaggaagcaactggcgaagctg 619 Query: 180 cgcgtcaaggccgagaaggcagccgaggagaagttgggaactcagctggagatcctggcc 239 || |||||||| ||||||||||||||||||||| |||| ||||||||||||| || || Sbjct: 620 cgtgtcaaggctgagaaggcagccgaggagaagctgggtcctcagctggagattcttgct 679 Query: 240 ccgatcaaatact 252 ||||||||||||| Sbjct: 680 ccgatcaaatact 692 Score = 67.9 bits (34), Expect = 3e-08 Identities = 78/90 (86%), Gaps = 2/90 (2%) Strand = Plus / Plus Query: 355 taaacctttgttatgcatgc-agttctgctaccctcatttgaaattttctacttggtcaa 413 |||||| ||||||||||| | ||||||||||| | ||||||||||||||| | | | || Sbjct: 788 taaaccgttgttatgcatcccagttctgctactcctatttgaaattttctagtcgatgaa 847 Query: 414 ctgtttc-gtttatcaaatgtgtgcatttg 442 ||||||| |||| ||||||||||||||||| Sbjct: 848 ctgtttctgtttgtcaaatgtgtgcatttg 877
>dbj|AK106078.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A04, full insert sequence Length = 1048 Score = 281 bits (142), Expect = 9e-73 Identities = 226/253 (89%), Gaps = 1/253 (0%) Strand = Plus / Plus Query: 1 atggtcattcccgacgcgctcaag-ttctgaggctgcagcctgggcacaggtactgcctn 59 |||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 450 atggtcatccccgacgcgctcaaggttctgaggctgcagcctgggcacaagtactgcctc 509 Query: 60 ctgggccagctctccaaggaggtcggatggaactacgccgacaccatcagggagctggag 119 || |||||||||||||||||||| || ||||||||| ||||||||||||||||| ||| Sbjct: 510 ctcggccagctctccaaggaggttggctggaactactatgacaccatcagggagcttgag 569 Query: 120 gaaaagaggaaggagaaggccaaggtctcgtacgacaggagaaagcagctggcgaagctc 179 || ||||||||||||||||||||||| | || |||||||| ||||| ||||||||||| Sbjct: 570 gagaagaggaaggagaaggccaaggttgcctatgacaggaggaagcaactggcgaagctg 629 Query: 180 cgcgtcaaggccgagaaggcagccgaggagaagttgggaactcagctggagatcctggcc 239 || |||||||| ||||||||||||||||||||| |||| ||||||||||||| || || Sbjct: 630 cgtgtcaaggctgagaaggcagccgaggagaagctgggtcctcagctggagattcttgct 689 Query: 240 ccgatcaaatact 252 ||||||||||||| Sbjct: 690 ccgatcaaatact 702 Score = 67.9 bits (34), Expect = 3e-08 Identities = 78/90 (86%), Gaps = 2/90 (2%) Strand = Plus / Plus Query: 355 taaacctttgttatgcatgc-agttctgctaccctcatttgaaattttctacttggtcaa 413 |||||| ||||||||||| | ||||||||||| | ||||||||||||||| | | | || Sbjct: 798 taaaccgttgttatgcatcccagttctgctactcctatttgaaattttctagtcgatgaa 857 Query: 414 ctgtttc-gtttatcaaatgtgtgcatttg 442 ||||||| |||| ||||||||||||||||| Sbjct: 858 ctgtttctgtttgtcaaatgtgtgcatttg 887
>dbj|AK103893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150E09, full insert sequence Length = 943 Score = 281 bits (142), Expect = 9e-73 Identities = 226/253 (89%), Gaps = 1/253 (0%) Strand = Plus / Plus Query: 1 atggtcattcccgacgcgctcaag-ttctgaggctgcagcctgggcacaggtactgcctn 59 |||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 450 atggtcatccccgacgcgctcaaggttctgaggctgcagcctgggcacaagtactgcctc 509 Query: 60 ctgggccagctctccaaggaggtcggatggaactacgccgacaccatcagggagctggag 119 || |||||||||||||||||||| || ||||||||| ||||||||||||||||| ||| Sbjct: 510 ctcggccagctctccaaggaggttggctggaactactatgacaccatcagggagcttgag 569 Query: 120 gaaaagaggaaggagaaggccaaggtctcgtacgacaggagaaagcagctggcgaagctc 179 || ||||||||||||||||||||||| | || |||||||| ||||| ||||||||||| Sbjct: 570 gagaagaggaaggagaaggccaaggttgcctatgacaggaggaagcaactggcgaagctg 629 Query: 180 cgcgtcaaggccgagaaggcagccgaggagaagttgggaactcagctggagatcctggcc 239 || |||||||| ||||||||||||||||||||| |||| ||||||||||||| || || Sbjct: 630 cgtgtcaaggctgagaaggcagccgaggagaagctgggtcctcagctggagattcttgct 689 Query: 240 ccgatcaaatact 252 ||||||||||||| Sbjct: 690 ccgatcaaatact 702 Score = 67.9 bits (34), Expect = 3e-08 Identities = 78/90 (86%), Gaps = 2/90 (2%) Strand = Plus / Plus Query: 355 taaacctttgttatgcatgc-agttctgctaccctcatttgaaattttctacttggtcaa 413 |||||| ||||||||||| | ||||||||||| | ||||||||||||||| | | | || Sbjct: 798 taaaccgttgttatgcatcccagttctgctactcctatttgaaattttctagtcgatgaa 857 Query: 414 ctgtttc-gtttatcaaatgtgtgcatttg 442 ||||||| |||| ||||||||||||||||| Sbjct: 858 ctgtttctgtttgtcaaatgtgtgcatttg 887
>gb|BT016389.1| Zea mays clone Contig222 mRNA sequence Length = 880 Score = 202 bits (102), Expect = 7e-49 Identities = 197/229 (86%) Strand = Plus / Plus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 ||||||||||| |||||||| |||| ||||||||| || ||| ||||||| ||||||||| Sbjct: 450 gttctgaggctacagcctggacacaagtactgcctcctcggcgagctctctaaggaggtc 509 Query: 84 ggatggaactacgccgacaccatcagggagctggaggaaaagaggaaggagaaggccaag 143 || ||||||||| |||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 510 gggtggaactaccatgacaccatcagggaacttgaggagaagaggaaggagaaggccaag 569 Query: 144 gtctcgtacgacaggagaaagcagctggcgaagctccgcgtcaaggccgagaaggcagcc 203 || | ||||| |||| ||||| |||| ||||| || ||||||||||||||||||||| Sbjct: 570 gttgcctacgagaggaagaagcaattggccaagctgcgtgtcaaggccgagaaggcagcc 629 Query: 204 gaggagaagttgggaactcagctggagatcctggccccgatcaaatact 252 |||||||||||||| ||||| ||||||| || ||||| ||||| |||| Sbjct: 630 gaggagaagttggggtctcagttggagattcttgcccctatcaagtact 678
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 149 bits (75), Expect = 9e-33 Identities = 126/143 (88%) Strand = Plus / Plus Query: 110 ggagctggaggaaaagaggaaggagaaggccaaggtctcgtacgacaggagaaagcagct 169 |||||| ||||| ||||||||||||||||||||||| | || |||||||| ||||| || Sbjct: 30900981 ggagcttgaggagaagaggaaggagaaggccaaggttgcctatgacaggaggaagcaact 30901040 Query: 170 ggcgaagctccgcgtcaaggccgagaaggcagccgaggagaagttgggaactcagctgga 229 ||||||||| || |||||||| ||||||||||||||||||||| |||| |||||||||| Sbjct: 30901041 ggcgaagctgcgtgtcaaggctgagaaggcagccgaggagaagctgggtcctcagctgga 30901100 Query: 230 gatcctggccccgatcaaatact 252 ||| || || ||||||||||||| Sbjct: 30901101 gattcttgctccgatcaaatact 30901123 Score = 113 bits (57), Expect = 5e-22 Identities = 80/88 (90%) Strand = Plus / Plus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| Sbjct: 30900059 gttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggtt 30900118 Query: 84 ggatggaactacgccgacaccatcaggg 111 || ||||||||| ||||||||||||| Sbjct: 30900119 ggctggaactactatgacaccatcaggg 30900146 Score = 113 bits (57), Expect = 5e-22 Identities = 80/88 (90%) Strand = Plus / Minus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| Sbjct: 30886223 gttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggtt 30886164 Query: 84 ggatggaactacgccgacaccatcaggg 111 || ||||||||| ||||||||||||| Sbjct: 30886163 ggctggaactactatgacaccatcaggg 30886136 Score = 67.9 bits (34), Expect = 3e-08 Identities = 78/90 (86%), Gaps = 2/90 (2%) Strand = Plus / Plus Query: 355 taaacctttgttatgcatgc-agttctgctaccctcatttgaaattttctacttggtcaa 413 |||||| ||||||||||| | ||||||||||| | ||||||||||||||| | | | || Sbjct: 30901219 taaaccgttgttatgcatcccagttctgctactcctatttgaaattttctagtcgatgaa 30901278 Query: 414 ctgtttc-gtttatcaaatgtgtgcatttg 442 ||||||| |||| ||||||||||||||||| Sbjct: 30901279 ctgtttctgtttgtcaaatgtgtgcatttg 30901308 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 atggtcattcccgacgcgctcaagt 25 |||||||| |||||||||||||||| Sbjct: 30899943 atggtcatccccgacgcgctcaagt 30899967 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 atggtcattcccgacgcgctcaagt 25 |||||||| |||||||||||||||| Sbjct: 30886349 atggtcatccccgacgcgctcaagt 30886325
>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence, complete sequence Length = 122496 Score = 149 bits (75), Expect = 9e-33 Identities = 126/143 (88%) Strand = Plus / Minus Query: 110 ggagctggaggaaaagaggaaggagaaggccaaggtctcgtacgacaggagaaagcagct 169 |||||| ||||| ||||||||||||||||||||||| | || |||||||| ||||| || Sbjct: 42109 ggagcttgaggagaagaggaaggagaaggccaaggttgcctatgacaggaggaagcaact 42050 Query: 170 ggcgaagctccgcgtcaaggccgagaaggcagccgaggagaagttgggaactcagctgga 229 ||||||||| || |||||||| ||||||||||||||||||||| |||| |||||||||| Sbjct: 42049 ggcgaagctgcgtgtcaaggctgagaaggcagccgaggagaagctgggtcctcagctgga 41990 Query: 230 gatcctggccccgatcaaatact 252 ||| || || ||||||||||||| Sbjct: 41989 gattcttgctccgatcaaatact 41967 Score = 113 bits (57), Expect = 5e-22 Identities = 80/88 (90%) Strand = Plus / Plus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| Sbjct: 56867 gttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggtt 56926 Query: 84 ggatggaactacgccgacaccatcaggg 111 || ||||||||| ||||||||||||| Sbjct: 56927 ggctggaactactatgacaccatcaggg 56954 Score = 113 bits (57), Expect = 5e-22 Identities = 80/88 (90%) Strand = Plus / Minus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| Sbjct: 43031 gttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggtt 42972 Query: 84 ggatggaactacgccgacaccatcaggg 111 || ||||||||| ||||||||||||| Sbjct: 42971 ggctggaactactatgacaccatcaggg 42944 Score = 67.9 bits (34), Expect = 3e-08 Identities = 78/90 (86%), Gaps = 2/90 (2%) Strand = Plus / Minus Query: 355 taaacctttgttatgcatgc-agttctgctaccctcatttgaaattttctacttggtcaa 413 |||||| ||||||||||| | ||||||||||| | ||||||||||||||| | | | || Sbjct: 41871 taaaccgttgttatgcatcccagttctgctactcctatttgaaattttctagtcgatgaa 41812 Query: 414 ctgtttc-gtttatcaaatgtgtgcatttg 442 ||||||| |||| ||||||||||||||||| Sbjct: 41811 ctgtttctgtttgtcaaatgtgtgcatttg 41782 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 atggtcattcccgacgcgctcaagt 25 |||||||| |||||||||||||||| Sbjct: 56741 atggtcatccccgacgcgctcaagt 56765 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 atggtcattcccgacgcgctcaagt 25 |||||||| |||||||||||||||| Sbjct: 43147 atggtcatccccgacgcgctcaagt 43123
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 149 bits (75), Expect = 9e-33 Identities = 126/143 (88%) Strand = Plus / Plus Query: 110 ggagctggaggaaaagaggaaggagaaggccaaggtctcgtacgacaggagaaagcagct 169 |||||| ||||| ||||||||||||||||||||||| | || |||||||| ||||| || Sbjct: 30991504 ggagcttgaggagaagaggaaggagaaggccaaggttgcctatgacaggaggaagcaact 30991563 Query: 170 ggcgaagctccgcgtcaaggccgagaaggcagccgaggagaagttgggaactcagctgga 229 ||||||||| || |||||||| ||||||||||||||||||||| |||| |||||||||| Sbjct: 30991564 ggcgaagctgcgtgtcaaggctgagaaggcagccgaggagaagctgggtcctcagctgga 30991623 Query: 230 gatcctggccccgatcaaatact 252 ||| || || ||||||||||||| Sbjct: 30991624 gattcttgctccgatcaaatact 30991646 Score = 113 bits (57), Expect = 5e-22 Identities = 80/88 (90%) Strand = Plus / Plus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| Sbjct: 30990582 gttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggtt 30990641 Query: 84 ggatggaactacgccgacaccatcaggg 111 || ||||||||| ||||||||||||| Sbjct: 30990642 ggctggaactactatgacaccatcaggg 30990669 Score = 113 bits (57), Expect = 5e-22 Identities = 80/88 (90%) Strand = Plus / Minus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| Sbjct: 30976746 gttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggtt 30976687 Query: 84 ggatggaactacgccgacaccatcaggg 111 || ||||||||| ||||||||||||| Sbjct: 30976686 ggctggaactactatgacaccatcaggg 30976659 Score = 67.9 bits (34), Expect = 3e-08 Identities = 78/90 (86%), Gaps = 2/90 (2%) Strand = Plus / Plus Query: 355 taaacctttgttatgcatgc-agttctgctaccctcatttgaaattttctacttggtcaa 413 |||||| ||||||||||| | ||||||||||| | ||||||||||||||| | | | || Sbjct: 30991742 taaaccgttgttatgcatcccagttctgctactcctatttgaaattttctagtcgatgaa 30991801 Query: 414 ctgtttc-gtttatcaaatgtgtgcatttg 442 ||||||| |||| ||||||||||||||||| Sbjct: 30991802 ctgtttctgtttgtcaaatgtgtgcatttg 30991831 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 atggtcattcccgacgcgctcaagt 25 |||||||| |||||||||||||||| Sbjct: 30990466 atggtcatccccgacgcgctcaagt 30990490 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 atggtcattcccgacgcgctcaagt 25 |||||||| |||||||||||||||| Sbjct: 30976872 atggtcatccccgacgcgctcaagt 30976848
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 141 bits (71), Expect = 2e-30 Identities = 125/143 (87%) Strand = Plus / Plus Query: 110 ggagctggaggaaaagaggaaggagaaggccaaggtctcgtacgacaggagaaagcagct 169 |||||| ||||| ||||||||||||||||||||||| | || || ||||| ||||| || Sbjct: 70333 ggagcttgaggagaagaggaaggagaaggccaaggttgcctatgagaggaggaagcaact 70392 Query: 170 ggcgaagctccgcgtcaaggccgagaaggcagccgaggagaagttgggaactcagctgga 229 ||| ||||| || |||||||| |||||| |||||||||||||| ||||| |||||||||| Sbjct: 70393 ggccaagctgcgtgtcaaggctgagaagacagccgaggagaagctgggatctcagctgga 70452 Query: 230 gatcctggccccgatcaaatact 252 ||| || |||||||||||||||| Sbjct: 70453 gattcttgccccgatcaaatact 70475 Score = 113 bits (57), Expect = 5e-22 Identities = 80/88 (90%) Strand = Plus / Plus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 ||||||||||||||||||||||||| ||||||||| || ||| ||||||| ||||||||| Sbjct: 69467 gttctgaggctgcagcctgggcacaagtactgcctcctcggcgagctctctaaggaggtc 69526 Query: 84 ggatggaactacgccgacaccatcaggg 111 |||||||||||| ||||||||||||| Sbjct: 69527 ggatggaactaccatgacaccatcaggg 69554
>ref|XM_469811.1| Oryza sativa (japonica cultivar-group), mRNA Length = 947 Score = 135 bits (68), Expect = 1e-28 Identities = 101/111 (90%), Gaps = 1/111 (0%) Strand = Plus / Plus Query: 1 atggtcattcccgacgcgctcaag-ttctgaggctgcagcctgggcacaggtactgcctn 59 |||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 289 atggtcatccccgacgcgctcaaggttctgaggctgcagcctgggcacaagtactgcctc 348 Query: 60 ctgggccagctctccaaggaggtcggatggaactacgccgacaccatcagg 110 || |||||||||||||||||||| || ||||||||| |||||||||||| Sbjct: 349 ctcggccagctctccaaggaggttggctggaactactatgacaccatcagg 399
>dbj|AK066603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071H21, full insert sequence Length = 2212 Score = 129 bits (65), Expect = 8e-27 Identities = 89/96 (92%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 1 atggtcattcccgacgcgctcaag-ttctgaggctgcagcctgggcacaggtactgcctn 59 |||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 481 atggtcatccccgacgcgctcaaggttctgaggctgcagcctgggcacaagtactgcctc 540 Query: 60 ctgggccagctctccaaggaggtcggatggaactac 95 || |||||||||||||||||||| || ||||||||| Sbjct: 541 ctcggccagctctccaaggaggttggctggaactac 576
>gb|BT017778.1| Zea mays clone EL01N0503C05.c mRNA sequence Length = 826 Score = 127 bits (64), Expect = 3e-26 Identities = 132/155 (85%) Strand = Plus / Plus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 |||||||||||||| || || |||| ||||||||| || || |||| || ||||||||| Sbjct: 439 gttctgaggctgcaaccaggacacaagtactgcctccttggggagctttctaaggaggtc 498 Query: 84 ggatggaactacgccgacaccatcagggagctggaggaaaagaggaaggagaaggccaag 143 |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct: 499 ggatggaactaccatgacaccatcagggagcttgaggagaagaggaaggagaaggctaag 558 Query: 144 gtctcgtacgacaggagaaagcagctggcgaagct 178 || | || || ||||| ||||||||||| ||||| Sbjct: 559 gtggcctatgagaggaggaagcagctggccaagct 593
>ref|XM_476399.1| Oryza sativa (japonica cultivar-group), mRNA Length = 859 Score = 119 bits (60), Expect = 8e-24 Identities = 113/131 (86%) Strand = Plus / Plus Query: 36 cagcctgggcacaggtactgcctnctgggccagctctccaaggaggtcggatggaactac 95 ||||| || |||| ||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 487 cagcccggccacaagtactgcctcctcggccagctctccaaggaggtcggctggaactac 546 Query: 96 gccgacaccatcagggagctggaggaaaagaggaaggagaaggccaaggtctcgtacgac 155 ||||||||||||||| ||||||| ||||| ||||||||||| ||||| | ||||| Sbjct: 547 cacgacaccatcagggaattggaggagaagagaaaggagaaggctaaggttgcatacgag 606 Query: 156 aggagaaagca 166 ||||| ||||| Sbjct: 607 aggaggaagca 617
>ref|XM_506141.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1567_G09.119 mRNA Length = 863 Score = 119 bits (60), Expect = 8e-24 Identities = 113/131 (86%) Strand = Plus / Plus Query: 36 cagcctgggcacaggtactgcctnctgggccagctctccaaggaggtcggatggaactac 95 ||||| || |||| ||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 491 cagcccggccacaagtactgcctcctcggccagctctccaaggaggtcggctggaactac 550 Query: 96 gccgacaccatcagggagctggaggaaaagaggaaggagaaggccaaggtctcgtacgac 155 ||||||||||||||| ||||||| ||||| ||||||||||| ||||| | ||||| Sbjct: 551 cacgacaccatcagggaattggaggagaagagaaaggagaaggctaaggttgcatacgag 610 Query: 156 aggagaaagca 166 ||||| ||||| Sbjct: 611 aggaggaagca 621
>dbj|AK103048.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117G12, full insert sequence Length = 859 Score = 119 bits (60), Expect = 8e-24 Identities = 113/131 (86%) Strand = Plus / Plus Query: 36 cagcctgggcacaggtactgcctnctgggccagctctccaaggaggtcggatggaactac 95 ||||| || |||| ||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 487 cagcccggccacaagtactgcctcctcggccagctctccaaggaggtcggctggaactac 546 Query: 96 gccgacaccatcagggagctggaggaaaagaggaaggagaaggccaaggtctcgtacgac 155 ||||||||||||||| ||||||| ||||| ||||||||||| ||||| | ||||| Sbjct: 547 cacgacaccatcagggaattggaggagaagagaaaggagaaggctaaggttgcatacgag 606 Query: 156 aggagaaagca 166 ||||| ||||| Sbjct: 607 aggaggaagca 617
>dbj|AK063806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G03, full insert sequence Length = 863 Score = 119 bits (60), Expect = 8e-24 Identities = 113/131 (86%) Strand = Plus / Plus Query: 36 cagcctgggcacaggtactgcctnctgggccagctctccaaggaggtcggatggaactac 95 ||||| || |||| ||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 491 cagcccggccacaagtactgcctcctcggccagctctccaaggaggtcggctggaactac 550 Query: 96 gccgacaccatcagggagctggaggaaaagaggaaggagaaggccaaggtctcgtacgac 155 ||||||||||||||| ||||||| ||||| ||||||||||| ||||| | ||||| Sbjct: 551 cacgacaccatcagggaattggaggagaagagaaaggagaaggctaaggttgcatacgag 610 Query: 156 aggagaaagca 166 ||||| ||||| Sbjct: 611 aggaggaagca 621
>gb|AY013245.2| Oryza sativa (japonica cultivar-group) chromosome 3 BAC 36I5, partial sequence Length = 65547 Score = 113 bits (57), Expect = 5e-22 Identities = 80/88 (90%) Strand = Plus / Plus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| Sbjct: 54893 gttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggtt 54952 Query: 84 ggatggaactacgccgacaccatcaggg 111 || ||||||||| ||||||||||||| Sbjct: 54953 ggctggaactactatgacaccatcaggg 54980 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 atggtcattcccgacgcgctcaagt 25 |||||||| |||||||||||||||| Sbjct: 54767 atggtcatccccgacgcgctcaagt 54791
>gb|AC146913.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0013C12 map near S6115, complete sequence Length = 123718 Score = 105 bits (53), Expect = 1e-19 Identities = 67/72 (93%) Strand = Plus / Plus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| Sbjct: 110359 gttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggtt 110418 Query: 84 ggatggaactac 95 || ||||||||| Sbjct: 110419 ggctggaactac 110430 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 atggtcattcccgacgcgctcaagt 25 |||||||| |||||||||||||||| Sbjct: 110234 atggtcatccccgacgcgctcaagt 110258
>gb|AC145327.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0095J10 map near S6115, complete sequence Length = 123717 Score = 105 bits (53), Expect = 1e-19 Identities = 67/72 (93%) Strand = Plus / Plus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| Sbjct: 14948 gttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggtt 15007 Query: 84 ggatggaactac 95 || ||||||||| Sbjct: 15008 ggctggaactac 15019 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 atggtcattcccgacgcgctcaagt 25 |||||||| |||||||||||||||| Sbjct: 14823 atggtcatccccgacgcgctcaagt 14847
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 105 bits (53), Expect = 1e-19 Identities = 67/72 (93%) Strand = Plus / Plus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| Sbjct: 12943023 gttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggtt 12943082 Query: 84 ggatggaactac 95 || ||||||||| Sbjct: 12943083 ggctggaactac 12943094 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 atggtcattcccgacgcgctcaagt 25 |||||||| |||||||||||||||| Sbjct: 12942898 atggtcatccccgacgcgctcaagt 12942922
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 105 bits (53), Expect = 1e-19 Identities = 67/72 (93%) Strand = Plus / Plus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| Sbjct: 13023230 gttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggtt 13023289 Query: 84 ggatggaactac 95 || ||||||||| Sbjct: 13023290 ggctggaactac 13023301 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 atggtcattcccgacgcgctcaagt 25 |||||||| |||||||||||||||| Sbjct: 13023105 atggtcatccccgacgcgctcaagt 13023129
>gb|AY109365.1| Zea mays CL4861_1 mRNA sequence Length = 1506 Score = 91.7 bits (46), Expect = 2e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 24 gttctgaggctgcagcctgggcacaggtactgcctnctgggccagctctccaaggaggtc 83 ||||||||||| |||||||| |||| ||||||||| || ||| ||||||| ||||||||| Sbjct: 938 gttctgaggctacagcctggacacaagtactgcctcctcggcgagctctctaaggaggtc 997 Query: 84 ggatggaactacgccgacaccatcaggga 112 || ||||||||| |||||||||||||| Sbjct: 998 gggtggaactaccatgacaccatcaggga 1026 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 169 tggcgaagctccgcgtcaaggccgagaaggcagccgaggagaagttgggaactcagctgg 228 |||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 1083 tggccaagctgcgtgtcaaggccgagaaggcagccgaggagaagttggggtctcagttgg 1142 Query: 229 agatcctggccccgatcaaatact 252 |||| || ||||| ||||| |||| Sbjct: 1143 agattcttgcccctatcaagtact 1166
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 89.7 bits (45), Expect = 7e-15 Identities = 68/76 (89%) Strand = Plus / Minus Query: 36 cagcctgggcacaggtactgcctnctgggccagctctccaaggaggtcggatggaactac 95 ||||| || |||| ||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 524199 cagcccggccacaagtactgcctcctcggccagctctccaaggaggtcggctggaactac 524140 Query: 96 gccgacaccatcaggg 111 |||||||||||||| Sbjct: 524139 cacgacaccatcaggg 524124 Score = 40.1 bits (20), Expect = 6.0 Identities = 44/52 (84%) Strand = Plus / Minus Query: 115 tggaggaaaagaggaaggagaaggccaaggtctcgtacgacaggagaaagca 166 ||||||| ||||| ||||||||||| ||||| | ||||| ||||| ||||| Sbjct: 523059 tggaggagaagagaaaggagaaggctaaggttgcatacgagaggaggaagca 523008
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 89.7 bits (45), Expect = 7e-15 Identities = 68/76 (89%) Strand = Plus / Minus Query: 36 cagcctgggcacaggtactgcctnctgggccagctctccaaggaggtcggatggaactac 95 ||||| || |||| ||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 126363 cagcccggccacaagtactgcctcctcggccagctctccaaggaggtcggctggaactac 126304 Query: 96 gccgacaccatcaggg 111 |||||||||||||| Sbjct: 126303 cacgacaccatcaggg 126288 Score = 40.1 bits (20), Expect = 6.0 Identities = 44/52 (84%) Strand = Plus / Minus Query: 115 tggaggaaaagaggaaggagaaggccaaggtctcgtacgacaggagaaagca 166 ||||||| ||||| ||||||||||| ||||| | ||||| ||||| ||||| Sbjct: 125223 tggaggagaagagaaaggagaaggctaaggttgcatacgagaggaggaagca 125172
>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1567_G09 Length = 121388 Score = 89.7 bits (45), Expect = 7e-15 Identities = 68/76 (89%) Strand = Plus / Minus Query: 36 cagcctgggcacaggtactgcctnctgggccagctctccaaggaggtcggatggaactac 95 ||||| || |||| ||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 78111 cagcccggccacaagtactgcctcctcggccagctctccaaggaggtcggctggaactac 78052 Query: 96 gccgacaccatcaggg 111 |||||||||||||| Sbjct: 78051 cacgacaccatcaggg 78036 Score = 40.1 bits (20), Expect = 6.0 Identities = 44/52 (84%) Strand = Plus / Minus Query: 115 tggaggaaaagaggaaggagaaggccaaggtctcgtacgacaggagaaagca 166 ||||||| ||||| ||||||||||| ||||| | ||||| ||||| ||||| Sbjct: 76971 tggaggagaagagaaaggagaaggctaaggttgcatacgagaggaggaagca 76920
>gb|AY498745.1| Capsicum annuum 60S ribosomal protein L13a (RpL13a) mRNA, complete cds Length = 797 Score = 61.9 bits (31), Expect = 2e-06 Identities = 95/115 (82%), Gaps = 1/115 (0%) Strand = Plus / Plus Query: 98 cgacaccatcagggagctggaggaaaagaggaaggagaaggccaaggtctcgtacgacag 157 |||||| |||| |||||| ||||| ||||| ||||||| ||| ||||| | || || || Sbjct: 531 cgacactatcaaggagctcgaggacaagagaaaggagagagcccaggtcacttatgagag 590 Query: 158 gagaaagcagctggcgaagctccgcgtcaaggccgagaaggcagccgaggagaag 212 ||||||||||||||| || ||| | || ||||| || ||||| |||||||||||| Sbjct: 591 gagaaagcagctggccaaactcagggttaaggctga-aaggctgccgaggagaag 644
>gb|DQ200397.1| Solanum tuberosum clone 070F10 60S ribosomal protein L13a-like protein mRNA, complete cds Length = 848 Score = 60.0 bits (30), Expect = 6e-06 Identities = 93/114 (81%) Strand = Plus / Plus Query: 99 gacaccatcagggagctggaggaaaagaggaaggagaaggccaaggtctcgtacgacagg 158 ||||| |||| |||||| ||| | ||||| ||||||| ||| |||| | ||||| ||| Sbjct: 505 gacactatcaaggagcttgagaacaagagaaaggagagagcccaggtagcatacgagagg 564 Query: 159 agaaagcagctggcgaagctccgcgtcaaggccgagaaggcagccgaggagaag 212 ||||||||| |||| || ||| | || |||||||||||||| || ||||||||| Sbjct: 565 agaaagcagttggccaaactcagggttaaggccgagaaggctgctgaggagaag 618
>ref|NM_124253.2| Arabidopsis thaliana structural constituent of ribosome AT5G48760 mRNA, complete cds Length = 834 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 98 cgacaccatcagggagctggaggaaaagaggaaggaga 135 ||||||||||| |||||||||| |||||||||||||| Sbjct: 501 cgacaccatcaaggagctggagacaaagaggaaggaga 538
>ref|XM_509965.1| PREDICTED: Pan troglodytes similar to ribosomal protein L13a; 60S ribosomal protein L13a; 23 kD highly basic protein (LOC452925), mRNA Length = 581 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||||||||||||||||||||| Sbjct: 387 ctggaggagaagaggaaggagaaggccaag 416
>ref|XM_526928.1| PREDICTED: Pan troglodytes integrin alpha 2 (LOC471550), mRNA Length = 3000 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||||||||||||||||||||| Sbjct: 2854 ctggaggagaagaggaaggagaaggccaag 2883
>ref|XM_514152.1| PREDICTED: Pan troglodytes similar to ribosomal protein L13a; 60S ribosomal protein L13a; 23 kD highly basic protein (LOC457684), mRNA Length = 663 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||||||||||||||||||||| Sbjct: 466 ctggaggagaagaggaaggagaaggccaag 495
>gb|AC125807.9| Homo sapiens 12 BAC RP11-253E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131995 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||||||||||||||||||||| Sbjct: 81677 ctggaggagaagaggaaggagaaggccaag 81648
>gb|DQ099054.1| Arachis stenosperma clone AS1RN3B12 microsatellite sequence Length = 758 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 78 gaggtcggatggaactacgccgacaccatcagggagctggaggaaaagaggaaggagaag 137 ||||| |||||||||||| ||| ||||||| ||||||||| | ||||| ||||||||| Sbjct: 230 gaggttggatggaactactacgataccatcactgagctggagaagaagagaaaggagaag 171 Query: 138 gc 139 || Sbjct: 170 gc 169
>gb|AY090359.1| Arabidopsis thaliana AT5g48760/K24G6_9 mRNA, complete cds Length = 677 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 98 cgacaccatcagggagctggaggaaaagaggaaggaga 135 ||||||||||| |||||||||| |||||||||||||| Sbjct: 494 cgacaccatcaaggagctggagacaaagaggaaggaga 531
>gb|AC020750.4| Homo sapiens chromosome 3 clone RP11-105H19 map 3p, complete sequence Length = 156933 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||||||||||||||||||||| Sbjct: 95013 ctggaggagaagaggaaggagaaggccaag 95042
>gb|AY088191.1| Arabidopsis thaliana clone 4275 mRNA, complete sequence Length = 814 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 98 cgacaccatcagggagctggaggaaaagaggaaggaga 135 ||||||||||| |||||||||| |||||||||||||| Sbjct: 494 cgacaccatcaaggagctggagacaaagaggaaggaga 531
>gb|AY122902.1| Arabidopsis thaliana At5g48760/K24G6_9 mRNA, complete cds Length = 621 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 98 cgacaccatcagggagctggaggaaaagaggaaggaga 135 ||||||||||| |||||||||| |||||||||||||| Sbjct: 465 cgacaccatcaaggagctggagacaaagaggaaggaga 502
>gb|AC083855.3| Homo sapiens chromosome 3 clone RP11-622I12 map 3p, complete sequence Length = 190861 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||||||||||||||||||||| Sbjct: 188756 ctggaggagaagaggaaggagaaggccaag 188727
>gb|AC003072.1|AC003072 Human BAC clone CTA-963H5 from 22q12.1-qter, complete sequence Length = 39401 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||||||||||||||||||||| Sbjct: 2109 ctggaggagaagaggaaggagaaggccaag 2080
>gb|U18488.1|STU18488 Salmo trutta transplantation antigen mRNA, partial cds Length = 621 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 115 tggaggaaaagaggaaggagaaggccaag 143 ||||||| ||||||||||||||||||||| Sbjct: 427 tggaggagaagaggaaggagaaggccaag 455
>dbj|AB049716.1| Pisum sativum ssa-6 mRNA for putative senescence-associated protein, complete cds Length = 918 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 78 gaggtcggatggaactacgccgacaccatcagggagctggaggaaaagaggaaggag 134 ||||| |||||||| ||| ||||||||||| |||| ||||| | |||||||||||| Sbjct: 438 gaggtgggatggaattactacgacaccatcaaggagttggagaagaagaggaaggag 494
>gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, complete sequence Length = 159182 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 316 aagtagtttggtaactctgtgtta 339 |||||||||||||||||||||||| Sbjct: 85817 aagtagtttggtaactctgtgtta 85840
>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete sequence Length = 176667 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 316 aagtagtttggtaactctgtgtta 339 |||||||||||||||||||||||| Sbjct: 144677 aagtagtttggtaactctgtgtta 144654
>gb|AC156572.3| Mus musculus BAC clone RP23-216C6 from chromosome 13, complete sequence Length = 208578 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 116 ggaggaaaagaggaaggagaagg 138 ||||||||||||||||||||||| Sbjct: 164530 ggaggaaaagaggaaggagaagg 164552
>gb|AC068898.8| Homo sapiens chromosome 10 clone RP11-534L6, complete sequence Length = 176188 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 114 ctggaggaaaagaggaaggagaaggcc 140 |||||||| |||||||||||||||||| Sbjct: 137660 ctggaggagaagaggaaggagaaggcc 137634
>gb|AC035139.11| Homo sapiens chromosome 10 clone RP11-563N6, complete sequence Length = 210472 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 114 ctggaggaaaagaggaaggagaaggcc 140 |||||||| |||||||||||||||||| Sbjct: 1543 ctggaggagaagaggaaggagaaggcc 1517
>gb|AC022533.10| Homo sapiens chromosome 10 clone RP11-230D19, complete sequence Length = 174569 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggcc 140 |||||||| |||||||||||||||||| Sbjct: 136015 ctggaggagaagaggaaggagaaggcc 136041
>gb|AC012346.9|AC012346 Homo sapiens chromosome , clone RP11-15N22, complete sequence Length = 164470 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 26 tctgaggctgcagcctgggcacaggta 52 |||||| |||||||||||||||||||| Sbjct: 12090 tctgagactgcagcctgggcacaggta 12064
>gb|AC025519.10|AC025519 Homo sapiens, clone RP11-484J3, complete sequence Length = 171464 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Plus Query: 26 tctgaggctgcagcctgggcacaggta 52 |||||| |||||||||||||||||||| Sbjct: 14386 tctgagactgcagcctgggcacaggta 14412
>gb|AC161811.6| Mus musculus chromosome 5, clone RP23-456E9, complete sequence Length = 163565 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 116 ggaggaaaagaggaaggagaagg 138 ||||||||||||||||||||||| Sbjct: 6084 ggaggaaaagaggaaggagaagg 6106
>emb|CT030185.11| Mouse DNA sequence from clone RP23-204L16 on chromosome 13, complete sequence Length = 116416 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 116 ggaggaaaagaggaaggagaagg 138 ||||||||||||||||||||||| Sbjct: 68010 ggaggaaaagaggaaggagaagg 67988
>gb|AC138365.16| Mus musculus chromosome 5, clone RP23-262B5, complete sequence Length = 172631 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 116 ggaggaaaagaggaaggagaagg 138 ||||||||||||||||||||||| Sbjct: 122358 ggaggaaaagaggaaggagaagg 122336
>ref|XM_520729.1| PREDICTED: Pan troglodytes similar to ribosomal protein L13a; 60S ribosomal protein L13a; 23 kD highly basic protein (LOC465277), mRNA Length = 662 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| |||||||||||||| |||||| Sbjct: 485 ctggaggagaagaggaaggagaaagccaag 514
>ref|XM_508935.1| PREDICTED: Pan troglodytes similar to ribosomal protein L13a; 60S ribosomal protein L13a; 23 kD highly basic protein (LOC451757), mRNA Length = 690 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||||| ||||||||||||||| Sbjct: 394 ctggaggagaagagaaaggagaaggccaag 423
>gb|DQ216006.1| Taeniopygia guttata clone 0061P0024G09 ribosomal protein L13A-like mRNA, complete sequence Length = 786 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||| ||||||||||||||||| Sbjct: 470 ctggaggagaagcggaaggagaaggccaag 499
>gb|DQ216003.1| Taeniopygia guttata clone 0058P0045E08 ribosomal protein L13A-like mRNA, complete sequence Length = 801 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||| ||||||||||||||||| Sbjct: 499 ctggaggagaagcggaaggagaaggccaag 528
>gb|DQ216001.1| Taeniopygia guttata clone 0058P0049C02 ribosomal protein L13A-like mRNA, complete sequence Length = 801 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||| ||||||||||||||||| Sbjct: 499 ctggaggagaagcggaaggagaaggccaag 528
>ref|XM_526130.1| PREDICTED: Pan troglodytes similar to APG7 autophagy 7-like; ubiquitin activating enzyme E1-like protein (LOC470747), mRNA Length = 2091 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| |||||||| |||||||||||| Sbjct: 198 ctggaggagaagaggaatgagaaggccaag 169
>gb|AC167134.5| Mus musculus chromosome 1, clone RP23-59E7, complete sequence Length = 140039 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 117 gaggaaaagaggaaggagaagg 138 |||||||||||||||||||||| Sbjct: 36566 gaggaaaagaggaaggagaagg 36545
>ref|XM_533620.2| PREDICTED: Canis familiaris Ribosomal protein L13a (RPL13A), mRNA Length = 525 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||||||||| ||||||||||| Sbjct: 343 ctggaggagaagaggaagaagaaggccaag 372
>gb|BC043976.1| Xenopus laevis ribosomal protein L13a, mRNA (cDNA clone MGC:54018 IMAGE:5571546), complete cds Length = 819 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||||| ||||||||||||||| Sbjct: 555 ctggaggagaagagaaaggagaaggccaag 584
>gb|AC166831.3| Mus musculus BAC clone RP23-270P14 from chromosome 16, complete sequence Length = 230269 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 122 aaagaggaaggagaaggccaag 143 |||||||||||||||||||||| Sbjct: 45549 aaagaggaaggagaaggccaag 45570
>emb|AL391822.12| Human DNA sequence from clone RP11-494K3 on chromosome 1 Contains the 3' end of the gene for neurofascin (NFASC) and a ribosomal protein L13a (RPL13A) pseudogene, complete sequence Length = 115292 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||||||||||| ||| ||||||||| Sbjct: 35836 ctggaggaaaagaggagggaaaaggccaag 35865
>emb|AJ843089.1| Platichthys flesus mRNA for 60S ribosomal protein L13A (rpl13A gene) Length = 686 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||||| ||||||||||||||| Sbjct: 493 ctggaggagaagagaaaggagaaggccaag 522
>gb|BC067891.1| Homo sapiens cDNA clone MGC:87657 IMAGE:5271409, complete cds Length = 1488 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| |||||||||||||| |||||| Sbjct: 402 ctggaggagaagaggaaggagaaagccaag 431
>gb|AC092768.6| Homo sapiens chromosome 11, clone RP11-1149L18, complete sequence Length = 146364 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| |||||||||||||| |||||| Sbjct: 2946 ctggaggagaagaggaaggagaaagccaag 2917
>gb|BC103039.1| Bos taurus cDNA clone MGC:128198 IMAGE:7984430, complete cds Length = 679 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||||| ||||||||||||||| Sbjct: 489 ctggaggagaagagaaaggagaaggccaag 518
>gb|AC084878.12| Homo sapiens 12q BAC RP11-101K23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 135060 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| |||||||||||||||| |||| Sbjct: 77810 ctggaggagaagaggaaggagaaggtcaag 77781
>gb|AC098935.2| Homo sapiens chromosome 1 clone RP11-564A8, complete sequence Length = 192565 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||| ||||||||||||||||| Sbjct: 60112 ctggaggagaagtggaaggagaaggccaag 60141
>gb|AC074250.6| Homo sapiens BAC clone RP11-622A1 from 4, complete sequence Length = 199331 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||||||||| ||||||||| ||||| Sbjct: 37374 ctggaggaaaagagaaaggagaagaccaag 37403
>ref|XM_936627.1| PREDICTED: Homo sapiens similar to ribosomal protein L13a (LOC647572), mRNA Length = 1466 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| |||||||||||||| |||||| Sbjct: 401 ctggaggagaagaggaaggagaaagccaag 430
>ref|XM_928691.1| PREDICTED: Homo sapiens similar to ribosomal protein L13a (LOC645683), mRNA Length = 1466 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| |||||||||||||| |||||| Sbjct: 401 ctggaggagaagaggaaggagaaagccaag 430
>gb|BC105558.1| Bos taurus cDNA clone IMAGE:8120112, with apparent retained intron Length = 2007 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||||| ||||||||||||||| Sbjct: 1274 ctggaggagaagagaaaggagaaggccaag 1303
>gb|AC129776.3| Mus musculus BAC clone RP23-197A15 from chromosome 16, complete sequence Length = 219345 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 122 aaagaggaaggagaaggccaag 143 |||||||||||||||||||||| Sbjct: 1413 aaagaggaaggagaaggccaag 1434
>ref|NG_002538.1| Homo sapiens ribosomal protein L13a pseudogene 2 (RPL13AP2) on chromosome 14 Length = 773 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 118 aggaaaagaggaaggagaaggccaag 143 |||| ||||||||||||||||||||| Sbjct: 505 aggagaagaggaaggagaaggccaag 530
>gb|AC018523.9|AC018523 Homo sapiens chromosome , clone RP11-140L24, complete sequence Length = 166507 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| |||||||||||||| |||||| Sbjct: 162328 ctggaggagaagaggaaggagaaagccaag 162299
>gb|AC107675.13| Mus musculus chromosome 1, clone RP24-471N7, complete sequence Length = 127374 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 117 gaggaaaagaggaaggagaagg 138 |||||||||||||||||||||| Sbjct: 43693 gaggaaaagaggaaggagaagg 43714
>emb|AL157792.3|CNS01RG7 Human chromosome 14 DNA sequence BAC R-388M7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 194760 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 118 aggaaaagaggaaggagaaggccaag 143 |||| ||||||||||||||||||||| Sbjct: 115365 aggagaagaggaaggagaaggccaag 115340
>emb|AL355773.4|CNS05TCO Human chromosome 14 DNA sequence BAC R-813I20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 216647 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| |||||||||||||| |||||| Sbjct: 124984 ctggaggagaagaggaaggagaaagccaag 124955
>emb|X56933.1|BTAPAS B.taurus mRNA, alternative polyadenylation signals Length = 1101 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaag 143 |||||||| ||||| ||||||||||||||| Sbjct: 464 ctggaggagaagagaaaggagaaggccaag 493
>gb|AY650304.1| Macaca fascicularis ribosomal protein L13A mRNA, partial cds Length = 462 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 115 tggaggaaaagaggaaggagaaggccaag 143 ||||||| |||||||||||||| |||||| Sbjct: 338 tggaggagaagaggaaggagaaagccaag 366
>ref|NM_111591.2| Arabidopsis thaliana structural constituent of ribosome AT3G07110 transcript variant AT3G07110.1 mRNA, complete cds Length = 881 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 81 gtcggatggaactacgccgacaccatcagggagctggaggaaaagaggaagga 133 ||||| |||||| || ||||||||||| |||||||||| | ||||| ||||| Sbjct: 512 gtcgggtggaaccactacgacaccatcaaggagctggagaacaagagaaagga 564
>ref|NM_001016486.2| Xenopus tropicalis hypothetical protein LOC549240 (LOC549240), mRNA Length = 771 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 115 tggaggaaaagaggaaggagaaggccaag 143 ||||||| ||||| ||||||||||||||| Sbjct: 556 tggaggagaagagaaaggagaaggccaag 584
>ref|XM_418218.1| PREDICTED: Gallus gallus similar to chromosome 19 open reading frame 21 (LOC420097), mRNA Length = 2960 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 110 ggagctggaggaaaagaggaaggag 134 |||||||||||| |||||||||||| Sbjct: 558 ggagctggaggacaagaggaaggag 582
>gb|AC006043.1| Homo sapiens BAC clone RP11-538D15 from 7, complete sequence Length = 189036 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 115133 aagaggaaggagaaggccaag 115153
>ref|XM_673595.1| Plasmodium berghei strain ANKA hypothetical protein (PB000517.00.0) partial mRNA Length = 6858 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 375 agttctgctaccctcatttgaaatt 399 |||| |||||||||||||||||||| Sbjct: 990 agttgtgctaccctcatttgaaatt 966
>emb|BX000688.11| Human DNA sequence from clone DAQB-36F16 on chromosome 6 Contains the GPR53P pseudogene for G protein-coupled receptor 53, the OR2I1P pseudogene for olfactory receptor, family 2, subfamily I, member 1, the UBD gene for ubiquitin D, the OR2H5P pseudogene for olfactory receptor, family 2, subfamily H, member 5, the RPL13AP pseudogene for ribosomal protein L13a, the OR2H2 gene for olfactory receptor, family 2, subfamily H, member 2, the GABBR1 gene for gamma-aminobutyric acid (GABA) B receptor, 1, and 3 CpG islands, complete sequence Length = 102684 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 50579 aagaggaaggagaaggccaag 50599
>emb|AL662826.11| Human DNA sequence from clone XXbac-101I20 on chromosome 6 contains a MAS1 oncogene pseudogene, a olfactory receptor, family 2, subfamily I, member 1 pseudogene (OR2I1P, HS6M1-14P), the UBD gene for ubiquitin D (FAT10), a olfactory receptor, family 2, subfamily H, member 5 pseudogene (OR2H5P, HS6M1-13P), a 60S ribosomal protein L13A (RPL13A) pseudogene, the OR2H2 gene for olfactory receptor, family 2, subfamily H, member 2 (HS6M1-12), the GABBR1 gene for gamma-aminobutryic acid (GABA) B receptor, 1 (GPRC3A, GABABR1), the 5' end of the MOG gene for myelin oligodendrocyte protein and three CpG islands, complete sequence Length = 145431 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 57000 aagaggaaggagaaggccaag 57020
>emb|AL645936.5| Human DNA sequence from clone XXbac-126D10 on chromosome 6 contains the OR2H2 gene for olfactory receptor, family 2, subfamily H, member 2, the OR2I1P and OR2H5P pseudogenes for olfactory receptor, family 2, subfamily I, member 1 and subfamily H, member 5, the UBD gene for ubiquitin D, a 60S ribosomal protein L13A (RPL13A) pseudogene, the GABBR1 gene for gamma-aminobutyric acid (GABA) B receptor, 1, a SMT3 suppressor of mif two 3 homolog 1 (SMT3H1) pseudogene, the MOG gene for myelin oligodendrocyte glycoprotein, the gene for a novel KRAB box-containing C2H2 type zinc finger protein and four CpG islands, complete sequence Length = 155874 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 33872 aagaggaaggagaaggccaag 33892
>emb|AL109827.8|HSJ309K20 Human DNA sequence from clone RP1-309K20 on chromosome 20 Contains the 5' end of the FER1L4 gene for fer-1-like 4 (C. elegans), the C20orf124 gene for chromosome 20 open reading frame 124, the SPAG4 gene for sperm associated antigen 4, the CPNE1 gene for copine I, the RBM12 gene for RNA binding motif protein 12, the 3' end of the NIFS gene for nitrogen fixation 1 (S. cerevisiae) and four CpG islands, complete sequence Length = 98599 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 aggaaaagaggaaggagaagg 138 ||||||||||||||||||||| Sbjct: 86576 aggaaaagaggaaggagaagg 86556
>emb|CR759766.5| Human DNA sequence from clone DAMA-BMC177C8 on chromosome 6, complete sequence Length = 127280 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 28898 aagaggaaggagaaggccaag 28918
>emb|AL645748.9| Mouse DNA sequence from clone RP23-241E24 on chromosome 13 Contains a CpG island, complete sequence Length = 58318 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 108 agggagctggaggaaaagaggaagg 132 ||||| ||||||||||||||||||| Sbjct: 6214 agggacctggaggaaaagaggaagg 6190
>emb|CR759870.6| Human DNA sequence from clone DADB-225M10 on chromosome 6, complete sequence Length = 57743 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 5724 aagaggaaggagaaggccaag 5744
>emb|CR788300.6| Human DNA sequence from clone DAAP-188P13 on chromosome 6, complete sequence Length = 78908 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 54283 aagaggaaggagaaggccaag 54303
>gb|AC161626.6| Pan troglodytes BAC clone CH251-114C24 from chromosome unknown, complete sequence Length = 167136 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 aggaaaagaggaaggagaagg 138 ||||||||||||||||||||| Sbjct: 139886 aggaaaagaggaaggagaagg 139866
>gb|AY114589.1| Arabidopsis thaliana putative 60S ribosomal protein L13A (At3g07110) mRNA, complete cds Length = 667 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 81 gtcggatggaactacgccgacaccatcagggagctggaggaaaagaggaagga 133 ||||| |||||| || ||||||||||| |||||||||| | ||||| ||||| Sbjct: 448 gtcgggtggaaccactacgacaccatcaaggagctggagaacaagagaaagga 500
>gb|DP000062.1| Sus scrofa target 117 genomic scaffold Length = 605739 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 206943 aagaggaaggagaaggccaag 206963
>ref|NM_203308.1| Homo sapiens ribosomal protein L13A-like (MGC34774), mRNA Length = 1848 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 1076 aagaggaaggagaaggccaag 1096
>gb|AY062793.1| Arabidopsis thaliana putative 60S ribosomal protein L13A (At3g07110; T1B9.24) mRNA, complete cds Length = 811 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 81 gtcggatggaactacgccgacaccatcagggagctggaggaaaagaggaagga 133 ||||| |||||| || ||||||||||| |||||||||| | ||||| ||||| Sbjct: 511 gtcgggtggaaccactacgacaccatcaaggagctggagaacaagagaaagga 563
>gb|AC006137.3|AC006137 Homo sapiens clone SCb-254N2 (UWGC:rg254N02) from 6p21, complete sequence Length = 129806 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 74324 aagaggaaggagaaggccaag 74304
>emb|BX927223.9| Human DNA sequence from clone DAMA-380P17 on chromosome 6, complete sequence Length = 83649 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 76900 aagaggaaggagaaggccaag 76920
>gb|AY057551.1| Arabidopsis thaliana AT3g07110/T1B9_24 mRNA, complete cds Length = 831 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 81 gtcggatggaactacgccgacaccatcagggagctggaggaaaagaggaagga 133 ||||| |||||| || ||||||||||| |||||||||| | ||||| ||||| Sbjct: 511 gtcgggtggaaccactacgacaccatcaaggagctggagaacaagagaaagga 563
>dbj|AB168305.1| Macaca fascicularis testis cDNA clone: QtsA-11103, similar to human ribosomal protein L13a (RPL13A), mRNA, RefSeq: NM_012423.2 Length = 680 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 115 tggaggaaaagaggaaggagaaggccaag 143 ||||||| |||||||||||||| |||||| Sbjct: 489 tggaggagaagaggaaggagaaagccaag 517
>gb|AC091989.3| Homo sapiens chromosome 5 clone RP11-76H13, complete sequence Length = 168575 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 ggaggaaaagaggaaggagaa 136 ||||||||||||||||||||| Sbjct: 89262 ggaggaaaagaggaaggagaa 89242
>gb|AF325041.2|AF325041 Arabidopsis thaliana AT3g07110 (AT3g07110/T1B9_24) mRNA, complete cds Length = 829 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 81 gtcggatggaactacgccgacaccatcagggagctggaggaaaagaggaagga 133 ||||| |||||| || ||||||||||| |||||||||| | ||||| ||||| Sbjct: 511 gtcgggtggaaccactacgacaccatcaaggagctggagaacaagagaaagga 563
>gb|AC148698.1| Macaca mulatta Major Histocompatibility Complex BAC MMU268P23, complete sequence Length = 185838 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 9122 aagaggaaggagaaggccaag 9142
>gb|AC148689.1| Macaca mulatta Major Histocompatibility Complex BAC MMU222I18, complete sequence Length = 174202 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 106184 aagaggaaggagaaggccaag 106204
>emb|BX822336.1|CNS0A5ZO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB2ZC08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 788 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 81 gtcggatggaactacgccgacaccatcagggagctggaggaaaagaggaagga 133 ||||| |||||| || ||||||||||| |||||||||| | ||||| ||||| Sbjct: 495 gtcgggtggaaccactacgacaccatcaaggagctggagaacaagagaaagga 547
>emb|BX824368.1|CNS0A5OL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH43ZE05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 800 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 81 gtcggatggaactacgccgacaccatcagggagctggaggaaaagaggaagga 133 ||||| |||||| || ||||||||||| |||||||||| | ||||| ||||| Sbjct: 489 gtcgggtggaaccactacgacaccatcaaggagctggagaacaagagaaagga 541
>emb|BX822519.1|CNS0A5UA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB45ZA10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 781 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 81 gtcggatggaactacgccgacaccatcagggagctggaggaaaagaggaagga 133 ||||| |||||| || ||||||||||| |||||||||| | ||||| ||||| Sbjct: 473 gtcgggtggaaccactacgacaccatcaaggagctggagaacaagagaaagga 525
>emb|BX822098.1|CNS0A5TD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB12ZA04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 660 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 81 gtcggatggaactacgccgacaccatcagggagctggaggaaaagaggaagga 133 ||||| |||||| || ||||||||||| |||||||||| | ||||| ||||| Sbjct: 363 gtcgggtggaaccactacgacaccatcaaggagctggagaacaagagaaagga 415
>gb|AY855164.1| Callithrix jacchus RPGR mRNA, partial cds Length = 1818 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 aggaaaagaggaaggagaagg 138 ||||||||||||||||||||| Sbjct: 534 aggaaaagaggaaggagaagg 554
>gb|BC027852.1| Homo sapiens ribosomal protein L13A-like, mRNA (cDNA clone MGC:34774 IMAGE:5207622), complete cds Length = 1848 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 1076 aagaggaaggagaaggccaag 1096
>emb|BX842691.5| Zebrafish DNA sequence from clone DKEY-239I20 in linkage group 20, complete sequence Length = 92189 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 31 ggctgcagcctgggcacaggtactg 55 |||||||||||| |||||||||||| Sbjct: 37637 ggctgcagcctgagcacaggtactg 37613
>emb|BX255937.13| Zebrafish DNA sequence from clone CH211-191D7 in linkage group 20, complete sequence Length = 165726 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 31 ggctgcagcctgggcacaggtactg 55 |||||||||||| |||||||||||| Sbjct: 114256 ggctgcagcctgagcacaggtactg 114280
>emb|CR760846.2| Xenopus tropicalis finished cDNA, clone TTpA004d22 Length = 771 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 115 tggaggaaaagaggaaggagaaggccaag 143 ||||||| ||||| ||||||||||||||| Sbjct: 556 tggaggagaagagaaaggagaaggccaag 584
>emb|AL031983.2|HS271M21 Human DNA sequence from clone RP1-271M21 on chromosome 6p21.31-22.2 Contains a MAS1 oncogene pseudogene, the OR2H2 gene for olfactory receptor 2H2, olfactory receptor 2I1 and 2H5 pseudogenes OR2I1P and OR2H5P, the gene for diubiquitin, an RPL13A (60S Ribosomal Protein L13A) pseudogene, the GABBR1 gene for gamma-aminobutyric acid (GABA) B receptor 1 and an SMT3H1 or SMT3H2 (SMT3 (suppressor of mif two 3, yeast) homolog) pseudogene and three CpG islands, complete sequence Length = 134292 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 aagaggaaggagaaggccaag 143 ||||||||||||||||||||| Sbjct: 79280 aagaggaaggagaaggccaag 79300
>gb|AC099743.3| Papio anubis clone RP41-450I16, complete sequence Length = 115022 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gaggaaaagaggaaggagaa 136 |||||||||||||||||||| Sbjct: 71030 gaggaaaagaggaaggagaa 71049
>gb|AC115061.20| Mus musculus chromosome 1, clone RP24-399G3, complete sequence Length = 203058 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 tggaggaaaagaggaaggag 134 |||||||||||||||||||| Sbjct: 159867 tggaggaaaagaggaaggag 159848
>gb|AC126115.5| Rattus norvegicus 4 BAC CH230-213L22 (Children's Hospital Oakland Research Institute) complete sequence Length = 214442 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aggaaaagaggaaggagaag 137 |||||||||||||||||||| Sbjct: 190650 aggaaaagaggaaggagaag 190669
>gb|AY168655.3| Porella platyphylla tRNA-Lys (trnK) gene, intron; chloroplast Length = 2117 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 accatcagggagctggagga 121 |||||||||||||||||||| Sbjct: 530 accatcagggagctggagga 549
>gb|BC052385.1| Mus musculus chromodomain helicase DNA binding protein 1-like, mRNA (cDNA clone MGC:57944 IMAGE:5703859), complete cds Length = 3018 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 tggaggaaaagaggaaggagaagg 138 ||||||| |||||||||||||||| Sbjct: 1991 tggaggagaagaggaaggagaagg 2014
>ref|XM_952952.1| Neurospora crassa OR74A hypothetical protein (NCU06939.1) partial mRNA Length = 1905 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 acaccatcagggagctggag 119 |||||||||||||||||||| Sbjct: 1388 acaccatcagggagctggag 1407
>ref|XM_327224.1| Neurospora crassa OR74A hypothetical protein (NCU06939.1) partial mRNA Length = 1905 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 acaccatcagggagctggag 119 |||||||||||||||||||| Sbjct: 1388 acaccatcagggagctggag 1407
>ref|NM_026539.1| Mus musculus chromodomain helicase DNA binding protein 1-like (Chd1l), mRNA Length = 2991 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 tggaggaaaagaggaaggagaagg 138 ||||||| |||||||||||||||| Sbjct: 2009 tggaggagaagaggaaggagaagg 2032
>gb|AC146171.2| Pan troglodytes BAC clone RP43-24K1 from 7, complete sequence Length = 131575 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gaggaaaagaggaaggagaa 136 |||||||||||||||||||| Sbjct: 90391 gaggaaaagaggaaggagaa 90410
>gb|AC119166.16| Mus musculus chromosome 1, clone RP24-393L8, complete sequence Length = 163121 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 aagttctgaggctgcagcct 41 |||||||||||||||||||| Sbjct: 71063 aagttctgaggctgcagcct 71082
>ref|XR_002787.1| PREDICTED: Mus musculus similar to ribosomal protein L13a (LOC624863), mRNA Length = 632 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaaggt 145 |||||||| || ||||||||||||||||||| Sbjct: 486 ctggaggagaaacggaaggagaaggccaaggt 517
>ref|XR_004732.1| PREDICTED: Mus musculus similar to ribosomal protein L13a (LOC624863), mRNA Length = 632 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaaggccaaggt 145 |||||||| || ||||||||||||||||||| Sbjct: 486 ctggaggagaaacggaaggagaaggccaaggt 517
>gb|AC146025.2| Pan troglodytes BAC clone RP43-119E9 from 7, complete sequence Length = 156630 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 gaggaaaagaggaaggagaa 136 |||||||||||||||||||| Sbjct: 5650 gaggaaaagaggaaggagaa 5631
>ref|XM_568754.1| Cryptococcus neoformans var. neoformans JEC21 exonuclease (CNB00080) partial mRNA Length = 3126 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 agaggaaggagaaggccaag 143 |||||||||||||||||||| Sbjct: 2099 agaggaaggagaaggccaag 2118
>gb|AC130541.4| Mus musculus BAC clone RP24-124P9 from chromosome 3, complete sequence Length = 191814 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 tggaggaaaagaggaaggagaagg 138 ||||||| |||||||||||||||| Sbjct: 25583 tggaggagaagaggaaggagaagg 25560
>gb|AC134901.4| Mus musculus BAC clone RP23-287E23 from chromosome 18, complete sequence Length = 188224 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 ggaaaagaggaaggagaagg 138 |||||||||||||||||||| Sbjct: 141019 ggaaaagaggaaggagaagg 141000
>gb|AC122213.4| Mus musculus BAC clone RP23-104C8 from chromosome 18, complete sequence Length = 188125 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 ggaaaagaggaaggagaagg 138 |||||||||||||||||||| Sbjct: 5806 ggaaaagaggaaggagaagg 5787
>gb|BC020486.1| Mus musculus chromodomain helicase DNA binding protein 1-like, mRNA (cDNA clone IMAGE:3708149) Length = 1179 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 tggaggaaaagaggaaggagaagg 138 ||||||| |||||||||||||||| Sbjct: 179 tggaggagaagaggaaggagaagg 202
>gb|AC099668.2| Homo sapiens chromosome 3 clone RP11-901L6, complete sequence Length = 242222 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 accatcagggagctggagga 121 |||||||||||||||||||| Sbjct: 238097 accatcagggagctggagga 238116
>gb|AC131652.2| Mus musculus BAC clone RP23-216A20 from 16, complete sequence Length = 184989 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 agctggaggaaaagaggaag 131 |||||||||||||||||||| Sbjct: 16627 agctggaggaaaagaggaag 16646
>gb|AC121768.2| Mus musculus BAC clone RP23-339H16 from 15, complete sequence Length = 199607 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 ggaggaaaagaggaaggagaaggc 139 |||||| ||||||||||||||||| Sbjct: 61017 ggaggagaagaggaaggagaaggc 60994
>emb|CR727990.2|CNS0GONW Tetraodon nigroviridis full-length cDNA Length = 1347 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 ctggaggaaaagaggaaggagaag 137 ||||||||| |||||||||||||| Sbjct: 221 ctggaggaagagaggaaggagaag 244
>gb|AC112926.7| Mus musculus chromosome 3, clone RP23-215M7, complete sequence Length = 222106 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 cagggagctggaggaaaaga 126 |||||||||||||||||||| Sbjct: 52065 cagggagctggaggaaaaga 52046
>emb|Z93096.1|HS390B3 Human DNA sequence from clone CTA-390B3 on chromosome 22q12-13, complete sequence Length = 92510 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 acaccatcagggagctggag 119 |||||||||||||||||||| Sbjct: 3808 acaccatcagggagctggag 3789
>ref|XM_504032.1| Yarrowia lipolytica CLIB122, YALI0E16665g predicted mRNA Length = 762 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 aggccgagaaggcagccgaggaga 210 ||||||||||||||||| |||||| Sbjct: 551 aggccgagaaggcagccaaggaga 574
>gb|BC057567.1| Mus musculus chromodomain helicase DNA binding protein 1-like, mRNA (cDNA clone MGC:66868 IMAGE:6415898), complete cds Length = 3037 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 tggaggaaaagaggaaggagaagg 138 ||||||| |||||||||||||||| Sbjct: 2020 tggaggagaagaggaaggagaagg 2043
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 agaggaaggagaaggccaag 143 |||||||||||||||||||| Sbjct: 20786 agaggaaggagaaggccaag 20767
>gb|AC104452.2| Homo sapiens chromosome 3 clone RP11-949J7, complete sequence Length = 186563 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 accatcagggagctggagga 121 |||||||||||||||||||| Sbjct: 69281 accatcagggagctggagga 69300
>gb|AC183545.2| Pan troglodytes BAC clone CH251-233G24 from chromosome 19, complete sequence Length = 151627 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 gggagctggaggaaaagaggaagg 132 ||||||||||||||||||| |||| Sbjct: 5187 gggagctggaggaaaagagcaagg 5164
>gb|AC104232.5| Homo sapiens chromosome 8, clone RP11-1D12, complete sequence Length = 148933 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 tttctacttggtcaactgtt 418 |||||||||||||||||||| Sbjct: 119736 tttctacttggtcaactgtt 119755
>ref|NM_079920.2| Drosophila melanogaster gomdanji CG6727-RA (gom), mRNA Length = 1286 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 ggaaggagaaggccaaggtc 146 |||||||||||||||||||| Sbjct: 932 ggaaggagaaggccaaggtc 951
>gb|AC098839.3| Genomic sequence for Mus musculus, clone RP23-469C2, complete sequence Length = 192470 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 aggctgcagcctgggcacag 49 |||||||||||||||||||| Sbjct: 69349 aggctgcagcctgggcacag 69368
>gb|AC010265.5| Homo sapiens chromosome 5 clone CTC-470E21, complete sequence Length = 126619 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 gaaaagaggaaggagaaggc 139 |||||||||||||||||||| Sbjct: 126413 gaaaagaggaaggagaaggc 126394
>gb|AC104126.2| Homo sapiens chromosome 5 clone RP11-526F3, complete sequence Length = 187914 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 gaaaagaggaaggagaaggc 139 |||||||||||||||||||| Sbjct: 145983 gaaaagaggaaggagaaggc 146002
>dbj|AK165656.1| Mus musculus kidney CCL-142 RAG cDNA, RIKEN full-length enriched library, clone:G430108O15 product:chromodomain helicase DNA binding protein 1-like, full insert sequence Length = 2716 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 tggaggaaaagaggaaggagaagg 138 ||||||| |||||||||||||||| Sbjct: 2034 tggaggagaagaggaaggagaagg 2057
>gb|AC060766.8| Homo sapiens chromosome 17, clone RP11-686D22, complete sequence Length = 169675 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 agctggaggaaaagaggaag 131 |||||||||||||||||||| Sbjct: 72763 agctggaggaaaagaggaag 72744
>gb|AC099019.1| Drosophila melanogaster, chromosome 2R, region 58C-58D, BAC clone BACR02O12, complete sequence Length = 171594 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 ggaaggagaaggccaaggtc 146 |||||||||||||||||||| Sbjct: 105341 ggaaggagaaggccaaggtc 105322
>gb|AC073850.4| Homo sapiens BAC clone RP11-697H17 from 7, complete sequence Length = 183846 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 gaggaaaagaggaaggagaa 136 |||||||||||||||||||| Sbjct: 84804 gaggaaaagaggaaggagaa 84785
>gb|AC182810.1| Gasterosteus aculeatus clone VMRC28-119K03, complete sequence Length = 131913 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ggaggaaaagaggaaggaga 135 |||||||||||||||||||| Sbjct: 85826 ggaggaaaagaggaaggaga 85845
>gb|AC121357.14| Mus musculus chromosome 15, clone RP23-56D7, complete sequence Length = 177867 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 114 ctggaggaaaagaggaaggagaaggccaaggt 145 |||||||| || ||||||||||||||||||| Sbjct: 124074 ctggaggagaaacggaaggagaaggccaaggt 124043
>gb|S48758.1| cyclin B [goldfish, oocytes, mRNA, 1425 nt] Length = 1425 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 tcagttttgggaaacctctg 299 |||||||||||||||||||| Sbjct: 796 tcagttttgggaaacctctg 815
>gb|AC154231.2| Mus musculus BAC clone RP24-339I11 from chromosome 13, complete sequence Length = 141075 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ggaggaaaagaggaaggaga 135 |||||||||||||||||||| Sbjct: 128495 ggaggaaaagaggaaggaga 128514
>gb|BC066506.1| Danio rerio tropomyosin 1 (alpha), mRNA (cDNA clone MGC:77009 IMAGE:6805687), complete cds Length = 1719 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 aggccgagaaggcagccgaggaga 210 ||||||||||||||||||| |||| Sbjct: 418 aggccgagaaggcagccgatgaga 441
>gb|BC045504.1| Danio rerio tropomyosin 1 (alpha), mRNA (cDNA clone MGC:55951 IMAGE:3819329), complete cds Length = 1217 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 aggccgagaaggcagccgaggaga 210 ||||||||||||||||||| |||| Sbjct: 413 aggccgagaaggcagccgatgaga 436
>dbj|AK014473.1| Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched library, clone:4432404A22 product:CDNA FLJ10480 FIS, CLONE NT2RP2000126, WEAKLY SIMILAR TO POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L (FRAGMENT) homolog [Homo sapiens], full insert sequence Length = 2991 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 tggaggaaaagaggaaggagaagg 138 ||||||| |||||||||||||||| Sbjct: 2009 tggaggagaagaggaaggagaagg 2032
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 tggaggaaaagaggaaggag 134 |||||||||||||||||||| Sbjct: 11624124 tggaggaaaagaggaaggag 11624105
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aggaaaagaggaaggagaag 137 |||||||||||||||||||| Sbjct: 198325 aggaaaagaggaaggagaag 198344
>gb|AC147097.3| Pan troglodytes BAC clone RP43-51D4 from chromosome 7, complete sequence Length = 192069 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 gaggaaaagaggaaggagaa 136 |||||||||||||||||||| Sbjct: 113084 gaggaaaagaggaaggagaa 113065
>gb|AC017048.6| Homo sapiens BAC clone RP11-324L17 from 2, complete sequence Length = 186373 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ggaggaaaagaggaaggaga 135 |||||||||||||||||||| Sbjct: 96979 ggaggaaaagaggaaggaga 96960
>gb|AC005539.1| Homo sapiens BAC clone RP11-335J18 from 2, complete sequence Length = 209613 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 tggaggaaaagaggaaggag 134 |||||||||||||||||||| Sbjct: 11632 tggaggaaaagaggaaggag 11613
>ref|XM_342921.2| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9330177P20 (LOC362602), mRNA Length = 2967 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gtcaaggccgagaaggcagc 202 |||||||||||||||||||| Sbjct: 2864 gtcaaggccgagaaggcagc 2845
>gb|AC136603.3| Homo sapiens chromosome 16 clone RP11-133M8, complete sequence Length = 183708 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 aaaagaggaaggagaaggcc 140 |||||||||||||||||||| Sbjct: 132643 aaaagaggaaggagaaggcc 132624
>gb|AC009141.7| Homo sapiens chromosome 16 clone RP11-543G23, complete sequence Length = 201716 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 aaaagaggaaggagaaggcc 140 |||||||||||||||||||| Sbjct: 60100 aaaagaggaaggagaaggcc 60081
>gb|AF273495.1|AF273495 Carassius auratus cyclin B mRNA, complete cds Length = 1501 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 tcagttttgggaaacctctg 299 |||||||||||||||||||| Sbjct: 858 tcagttttgggaaacctctg 877
>emb|AL671536.8| Mouse DNA sequence from clone RP23-291O10 on chromosome X, complete sequence Length = 221255 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aggaaaagaggaaggagaag 137 |||||||||||||||||||| Sbjct: 171811 aggaaaagaggaaggagaag 171830
>gb|AF045470.1|AF045470 Drosophila melanogaster Gom (gom) mRNA, complete cds Length = 1248 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 ggaaggagaaggccaaggtc 146 |||||||||||||||||||| Sbjct: 932 ggaaggagaaggccaaggtc 951
>gb|AC151896.3| Mus musculus BAC clone RP24-501F15 from 18, complete sequence Length = 189528 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 caaatactaagagagatcagagct 268 ||||||| |||||||||||||||| Sbjct: 30976 caaataccaagagagatcagagct 30953
>gb|AE003456.3| Drosophila melanogaster chromosome 2R, section 64 of 73 of the complete sequence Length = 288451 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 ggaaggagaaggccaaggtc 146 |||||||||||||||||||| Sbjct: 142885 ggaaggagaaggccaaggtc 142904
>gb|AC140839.9| Mus musculus chromosome 3, clone RP24-316D12, complete sequence Length = 168722 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 tggaggaaaagaggaaggagaagg 138 ||||||| |||||||||||||||| Sbjct: 69045 tggaggagaagaggaaggagaagg 69068
>gb|AC146916.3| Rattus norvegicus strain Brown Norway clone CH230-206L9, complete sequence Length = 215015 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aggaaaagaggaaggagaag 137 |||||||||||||||||||| Sbjct: 198325 aggaaaagaggaaggagaag 198344
>gb|AC154565.2| Mus musculus BAC clone RP23-403J19 from chromosome 16, complete sequence Length = 202981 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 agctggaggaaaagaggaag 131 |||||||||||||||||||| Sbjct: 9565 agctggaggaaaagaggaag 9546
>ref|NM_200934.2| Danio rerio tropomyosin 1 (alpha) (tpm1), mRNA Length = 1719 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 aggccgagaaggcagccgaggaga 210 ||||||||||||||||||| |||| Sbjct: 418 aggccgagaaggcagccgatgaga 441
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 tggaggaaaagaggaaggag 134 |||||||||||||||||||| Sbjct: 11623795 tggaggaaaagaggaaggag 11623776
>emb|AL772424.5|CNS08CA2 Oryza sativa chromosome 12, . BAC OJ1118_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 108927 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tggaggaaaagaggaaggag 134 |||||||||||||||||||| Sbjct: 36704 tggaggaaaagaggaaggag 36723
>gb|AC003054.1|AC003054 Drosophila melanogaster DNA sequence (P1 DS04894 (D86)), complete sequence Length = 47334 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 ggaaggagaaggccaaggtc 146 |||||||||||||||||||| Sbjct: 22490 ggaaggagaaggccaaggtc 22509
>gb|BC062966.1| Mus musculus chromodomain helicase DNA binding protein 1-like, mRNA (cDNA clone MGC:64788 IMAGE:6415898), complete cds Length = 3066 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 tggaggaaaagaggaaggagaagg 138 ||||||| |||||||||||||||| Sbjct: 2020 tggaggagaagaggaaggagaagg 2043
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 aggccgagaaggcagccgaggaga 210 ||||||||||||||||| |||||| Sbjct: 1975350 aggccgagaaggcagccaaggaga 1975373
>gb|AC171072.2| Rhesus Macaque CHR7 BAC CH250-508E7 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 165491 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gaggaaaagaggaaggagaa 136 |||||||||||||||||||| Sbjct: 44021 gaggaaaagaggaaggagaa 44040 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,015,463 Number of Sequences: 3902068 Number of extensions: 5015463 Number of successful extensions: 135250 Number of sequences better than 10.0: 185 Number of HSP's better than 10.0 without gapping: 185 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134667 Number of HSP's gapped (non-prelim): 564 length of query: 443 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 421 effective length of database: 17,147,199,772 effective search space: 7218971104012 effective search space used: 7218971104012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
