ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags8p19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105949.1| Zea mays PCO103361 mRNA sequence Length = 1690 Score = 48.1 bits (24), Expect = 0.026 Identities = 55/64 (85%), Gaps = 1/64 (1%) Strand = Plus / Plus Query: 27 tattttacgagcaaaagtattcaggaagtgtgcagagcattcaaattcccccacaaaatt 86 ||||||||||||| ||| ||||||||||| ||| |||||||| ||||| |||||||| Sbjct: 21 tattttacgagcagaag-attcaggaagtatgcgctgcattcaagttccctcacaaaatc 79 Query: 87 cagg 90 |||| Sbjct: 80 cagg 83
>gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh1-F allele, complete cds Length = 160480 Score = 48.1 bits (24), Expect = 0.026 Identities = 55/64 (85%), Gaps = 1/64 (1%) Strand = Plus / Minus Query: 27 tattttacgagcaaaagtattcaggaagtgtgcagagcattcaaattcccccacaaaatt 86 ||||||||||||| ||| ||||||||||| ||| |||||||| ||||| |||||||| Sbjct: 110445 tattttacgagcagaag-attcaggaagtatgcgctgcattcaagttccctcacaaaatc 110387 Query: 87 cagg 90 |||| Sbjct: 110386 cagg 110383
>gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, complete cds; Fourf copia_LTR and Huck gypsy_LTR retrotransposons, complete sequence; Opie2 copia_LTR retrotransposon Zeon gypsy_LTR and Opie1 copia_LTR retrotransposons, complete sequence; Ji copia_LTR retrotransposon, complete sequence; and unknown protein (adh1B), cyclin H-1 (adh1C), unknown protein (adh1D), hypothetical protein (adh1E), and unknown protein (adh1F) genes, complete cds Length = 126039 Score = 48.1 bits (24), Expect = 0.026 Identities = 55/64 (85%), Gaps = 1/64 (1%) Strand = Plus / Minus Query: 27 tattttacgagcaaaagtattcaggaagtgtgcagagcattcaaattcccccacaaaatt 86 ||||||||||||| ||| ||||||||||| ||| |||||||| ||||| |||||||| Sbjct: 93819 tattttacgagcagaag-attcaggaagtatgcgctgcattcaagttccctcacaaaatc 93761 Query: 87 cagg 90 |||| Sbjct: 93760 cagg 93757
>gb|AC111016.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1651_D06, complete sequence Length = 145323 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 gtagaaaattatttcaactaat 304 |||||||||||||||||||||| Sbjct: 5660 gtagaaaattatttcaactaat 5639
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 gtagaaaattatttcaactaat 304 |||||||||||||||||||||| Sbjct: 22162395 gtagaaaattatttcaactaat 22162374
>gb|AC102259.7| Mus musculus chromosome 3, clone RP24-199C12, complete sequence Length = 182793 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 tgatatttttctatatattgt 422 ||||||||||||||||||||| Sbjct: 113601 tgatatttttctatatattgt 113621
>gb|AC159094.4| Mus musculus chromosome 3, clone RP23-277N17, complete sequence Length = 192453 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 tgatatttttctatatattgt 422 ||||||||||||||||||||| Sbjct: 32325 tgatatttttctatatattgt 32305
>emb|CR933799.1| Homo sapiens genomic DNA; cDNA DKFZp686K1947 (from clone DKFZp686K1947) Length = 5891 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 ttatttcaactaatatcctct 311 ||||||||||||||||||||| Sbjct: 4874 ttatttcaactaatatcctct 4894
>emb|CR394561.8| Zebrafish DNA sequence from clone CH211-28G14 in linkage group 17, complete sequence Length = 154908 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 319 tgatattaaatagctataaag 339 ||||||||||||||||||||| Sbjct: 27020 tgatattaaatagctataaag 27040
>gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete sequence Length = 116601 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 420 tgtaggtggatctataaaattaaat 444 ||||||||| ||||||||||||||| Sbjct: 90865 tgtaggtgggtctataaaattaaat 90841
>gb|AC087894.15| Homo sapiens 12 BAC RP11-749H20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169117 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 tcaactggttgatatttttct 413 ||||||||||||||||||||| Sbjct: 41888 tcaactggttgatatttttct 41908
>gb|AC022432.5| Homo sapiens chromosome 19 clone CTD-3030D20, complete sequence Length = 102223 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 ttatttcaactaatatcctct 311 ||||||||||||||||||||| Sbjct: 17363 ttatttcaactaatatcctct 17343
>dbj|AP006506.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-284M8, complete sequence Length = 255195 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 atatcctcttcatgcctgata 323 ||||||||||||||||||||| Sbjct: 93068 atatcctcttcatgcctgata 93088
>emb|AL611967.21| Mouse DNA sequence from clone RP23-121D17 on chromosome 4, complete sequence Length = 173824 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 atatcctcttcatgcctgata 323 ||||||||||||||||||||| Sbjct: 74888 atatcctcttcatgcctgata 74868
>gb|AC168149.7| Medicago truncatula clone mth2-84g4, complete sequence Length = 122726 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 ttcatactcatacataaaat 469 |||||||||||||||||||| Sbjct: 103369 ttcatactcatacataaaat 103350
>gb|AE001421.2| Plasmodium falciparum 3D7 chromosome 2 section 58 of 73 of the complete sequence Length = 20422 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 tatttttctatatattgtag 424 |||||||||||||||||||| Sbjct: 9425 tatttttctatatattgtag 9444
>ref|NM_001033165.1| Mus musculus RIKEN cDNA 2010203O07 gene (2010203O07Rik), mRNA Length = 1115 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 tattgtaggtggatctataa 436 |||||||||||||||||||| Sbjct: 510 tattgtaggtggatctataa 529
>gb|AC158936.4| Mus musculus chromosome 3, clone RP23-235P13, complete sequence Length = 160709 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ttgatatttttctatatatt 420 |||||||||||||||||||| Sbjct: 28914 ttgatatttttctatatatt 28895
>ref|XM_710703.1| Candida albicans SC5314 putative pantothenate synthase (CaO19_10333), mRNA Length = 618 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 aagagaatcaaatggatcagctat 228 ||||||||||||||||| |||||| Sbjct: 261 aagagaatcaaatggattagctat 284
>ref|XM_710653.1| Candida albicans SC5314 putative pantothenate synthase (CaO19_2815), mRNA Length = 618 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 aagagaatcaaatggatcagctat 228 ||||||||||||||||| |||||| Sbjct: 261 aagagaatcaaatggattagctat 284
>ref|XM_705608.1| Candida albicans SC5314 putative pantothenate synthase (CaO19.163), mRNA Length = 677 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 aagagaatcaaatggatcagctat 228 ||||||||||||||||| |||||| Sbjct: 594 aagagaatcaaatggattagctat 617
>ref|XM_705595.1| Candida albicans SC5314 putative pantothenate synthase (CaO19.7797), mRNA Length = 677 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 aagagaatcaaatggatcagctat 228 ||||||||||||||||| |||||| Sbjct: 594 aagagaatcaaatggattagctat 617
>ref|XM_451767.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B05225g predicted mRNA Length = 4326 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 277 caactggtagaaaattatttcaactaat 304 |||||| | ||||||||||||||||||| Sbjct: 1455 caactgctggaaaattatttcaactaat 1428
>emb|Z68882.1|CEC47E12 Caenorhabditis elegans Cosmid C47E12, complete sequence Length = 37855 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 ttagcatattttctcaactg 399 |||||||||||||||||||| Sbjct: 29842 ttagcatattttctcaactg 29823
>emb|CR457463.6| Zebrafish DNA sequence from clone DKEY-110G19 in linkage group 4, complete sequence Length = 145220 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 agaaaattatttcaactaat 304 |||||||||||||||||||| Sbjct: 82746 agaaaattatttcaactaat 82765
>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of 11 of the complete sequence Length = 613322 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 450 ttcatactcatacataaaatgttt 473 |||||||||||| ||||||||||| Sbjct: 581882 ttcatactcataaataaaatgttt 581859
>ref|XM_721575.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06083) partial mRNA Length = 4209 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ttgatatttttctatatatt 420 |||||||||||||||||||| Sbjct: 870 ttgatatttttctatatatt 851
>gb|AC104884.10| Mus musculus chromosome 3, clone RP24-281E9, complete sequence Length = 168622 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ttgatatttttctatatatt 420 |||||||||||||||||||| Sbjct: 152357 ttgatatttttctatatatt 152376
>emb|AL445529.14| Human DNA sequence from clone RP11-793K1 on chromosome 6 Cpntains a ribosomal protein S15a (RPS15A) pseudogene, complete sequence Length = 76336 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 gatattaaatagctataaag 339 |||||||||||||||||||| Sbjct: 67518 gatattaaatagctataaag 67537
>emb|AL513317.11| Human DNA sequence from clone RP11-393P6 on chromosome 9, complete sequence Length = 142368 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 ctggttgatatttttctatatatt 420 |||||| ||||||||||||||||| Sbjct: 85516 ctggtttatatttttctatatatt 85539
>emb|AL360176.22| Human DNA sequence from clone RP11-124H7 on chromosome 10 Contains the 5' end of the MMP21 gene for matrix metalloproteinase 21, the UROS gene for uroporphyrinogen III synthase (congenital erythropoietic porphyria), the BCCIP gene for BRCA2 and CDKN1A interacting protein (TOK-1), the DDX32 gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32 (FLJ10694, FLJ10889), the 5' UTR of a novel gene (LOC92565) and three CpG islands, complete sequence Length = 155699 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 tctataaaattaaattcaagttca 453 |||||||| ||||||||||||||| Sbjct: 153704 tctataaatttaaattcaagttca 153727
>emb|AL353620.11| Human DNA sequence from clone RP11-485E1 on chromosome 13, complete sequence Length = 139079 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 450 ttcatactcatacataaaatgttt 473 |||||||||||| ||||||||||| Sbjct: 114523 ttcatactcataaataaaatgttt 114500
>emb|AL163542.8| Human DNA sequence from clone RP11-360I23 on chromosome 13 Contains part of the DACH gene for dachshund homolog (Drosophila) (DACH1 FLJ10138), complete sequence Length = 177037 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ttgatatttttctatatatt 420 |||||||||||||||||||| Sbjct: 29813 ttgatatttttctatatatt 29832
>emb|BX890570.11| Zebrafish DNA sequence from clone DKEYP-7F1 in linkage group 25, complete sequence Length = 170260 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 ttgtatcatgggaagttcat 196 |||||||||||||||||||| Sbjct: 103522 ttgtatcatgggaagttcat 103503
>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome Length = 1512977 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 gttgatatttttctatatat 419 |||||||||||||||||||| Sbjct: 1441729 gttgatatttttctatatat 1441710
>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome Length = 1516355 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 gttgatatttttctatatat 419 |||||||||||||||||||| Sbjct: 1463960 gttgatatttttctatatat 1463941
>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1320834 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 277 caactggtagaaaattatttcaactaat 304 |||||| | ||||||||||||||||||| Sbjct: 473336 caactgctggaaaattatttcaactaat 473363
>emb|AL360354.1|VYIVD10 Plasmodium vivax telomeric YAC clone, complete finished sequence Length = 155711 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 atatttttctatatattgta 423 |||||||||||||||||||| Sbjct: 118957 atatttttctatatattgta 118976
>emb|CR848706.10| Zebrafish DNA sequence from clone CH211-113K17 in linkage group 7, complete sequence Length = 150558 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 atgcctgatattaaatagct 333 |||||||||||||||||||| Sbjct: 99600 atgcctgatattaaatagct 99619
>gb|AC116607.5| Homo sapiens chromosome 18, clone RP11-323P22, complete sequence Length = 179986 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 395 aactggttgatatttttctatatattgt 422 |||| |||||| |||||||||||||||| Sbjct: 81412 aactagttgatttttttctatatattgt 81439
>gb|AC130650.2| Homo sapiens chromosome 16 clone CTA-276F8, complete sequence Length = 215286 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 ttgtaggtggatctataaaa 438 |||||||||||||||||||| Sbjct: 61774 ttgtaggtggatctataaaa 61793
>gb|AC104956.6| Homo sapiens chromosome 18, clone RP11-646H8, complete sequence Length = 157587 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 395 aactggttgatatttttctatatattgt 422 |||| |||||| |||||||||||||||| Sbjct: 142908 aactagttgatttttttctatatattgt 142935
>gb|AC010557.4| Drosophila melanogaster 3L BAC RP98-9E21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169425 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 tggatctataaaattaaatt 445 |||||||||||||||||||| Sbjct: 92748 tggatctataaaattaaatt 92767
>gb|AC149127.6| Medicago truncatula clone mth2-108o17, complete sequence Length = 92727 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 ttcatactcatacataaaat 469 |||||||||||||||||||| Sbjct: 55082 ttcatactcatacataaaat 55101
>gb|AC126779.19| Medicago truncatula clone mth2-34m14, complete sequence Length = 128856 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tataaaattaaattcaagtt 451 |||||||||||||||||||| Sbjct: 48553 tataaaattaaattcaagtt 48534
>gb|AC104367.6| Homo sapiens chromosome 18, clone RP11-126G14, complete sequence Length = 163931 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 395 aactggttgatatttttctatatattgt 422 |||| |||||| |||||||||||||||| Sbjct: 48775 aactagttgatttttttctatatattgt 48748
>gb|AC063963.11| Homo sapiens chromosome 10 clone RP11-295J3, complete sequence Length = 179104 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 tctataaaattaaattcaagttca 453 |||||||| ||||||||||||||| Sbjct: 5 tctataaatttaaattcaagttca 28
>gb|AC104384.3| Homo sapiens chromosome 8, clone CTD-2381M20, complete sequence Length = 163996 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 cacaaaattcaggaatgtat 97 |||||||||||||||||||| Sbjct: 11021 cacaaaattcaggaatgtat 11002
>dbj|AK136359.1| Mus musculus 15 days embryo embryonic body below diaphragm cDNA, RIKEN full-length enriched library, clone:8230401H24 product:BA16L21.2.1 (Novel DnaJ domain protein similar to Drosophila, C. elegans and Arabidopsis predicted proteins (Isoform 1)) (Hypothetical protein) homolog [Homo sapiens], full insert sequence Length = 1115 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 tattgtaggtggatctataa 436 |||||||||||||||||||| Sbjct: 510 tattgtaggtggatctataa 529
>gb|AC023301.5| Homo sapiens chromosome 18, clone RP11-713C5, complete sequence Length = 167190 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 caactggtagaaaattattt 296 |||||||||||||||||||| Sbjct: 81907 caactggtagaaaattattt 81888
>gb|AC091138.6| Homo sapiens chromosome 18, clone RP11-676J15, complete sequence Length = 207520 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 caactggtagaaaattattt 296 |||||||||||||||||||| Sbjct: 25587 caactggtagaaaattattt 25606
>gb|AC087808.2| Homo sapiens chromosome 8, clone RP11-89A16, complete sequence Length = 189878 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 cacaaaattcaggaatgtat 97 |||||||||||||||||||| Sbjct: 78705 cacaaaattcaggaatgtat 78686
>ref|XM_687856.1| PREDICTED: Danio rerio similar to Nedd-4-like E3 ubiquitin-protein ligase WWP2 (WW domain-containing protein 2) (Atropin-1 interacting protein 2) (AIP2) (LOC564527), mRNA Length = 2436 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 ttgtatcatgggaagttcat 196 |||||||||||||||||||| Sbjct: 1657 ttgtatcatgggaagttcat 1676
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ttgatatttttctatatatt 420 |||||||||||||||||||| Sbjct: 12580129 ttgatatttttctatatatt 12580110
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 184 atgggaagttcatcaaggnaaaa 206 |||||||||||||||||| |||| Sbjct: 24234352 atgggaagttcatcaaggaaaaa 24234330
>gb|AC013421.31| Homo sapiens 12 BAC RP11-714I16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 57062 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 ttagcatattttctcaactg 399 |||||||||||||||||||| Sbjct: 38000 ttagcatattttctcaactg 37981
>gb|AC010983.9| Homo sapiens BAC clone RP11-484E10 from 2, complete sequence Length = 189870 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 aaattatttcaactaatatc 307 |||||||||||||||||||| Sbjct: 44150 aaattatttcaactaatatc 44169
>gb|AC090502.11| Homo sapiens 12 BAC RP11-274M17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173301 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 atatttttctatatattgta 423 |||||||||||||||||||| Sbjct: 26260 atatttttctatatattgta 26241
>gb|AC134504.2| Homo sapiens 3 BAC RP11-316F12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 87167 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 ttttgattccccctctctccccaa 164 |||||| ||||||||||||||||| Sbjct: 29466 ttttgagtccccctctctccccaa 29489
>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046B10 Length = 142596 Score = 40.1 bits (20), Expect = 6.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 184 atgggaagttcatcaaggnaaaa 206 |||||||||||||||||| |||| Sbjct: 58916 atgggaagttcatcaaggaaaaa 58894
>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0041C07 Length = 179047 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ttgatatttttctatatatt 420 |||||||||||||||||||| Sbjct: 46067 ttgatatttttctatatatt 46048
>dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711A01 Length = 162400 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ttgatatttttctatatatt 420 |||||||||||||||||||| Sbjct: 95456 ttgatatttttctatatatt 95437
>emb|BX546479.5| Human DNA sequence from clone RP11-438N17 on chromosome 22, complete sequence Length = 172294 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 tctataaaattaaattcaagttca 453 |||||||| ||||||||||||||| Sbjct: 117274 tctataaatttaaattcaagttca 117297 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 430 tctataaaattaaattcaagttca 453 |||||||| ||||||||||||||| Sbjct: 105011 tctataaatttaaattcaagttca 104988
>gb|U91322.1|HSU91322 Human chromosome 16p13 BAC clone CIT987SK-276F8 complete sequence Length = 215286 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 ttgtaggtggatctataaaa 438 |||||||||||||||||||| Sbjct: 153513 ttgtaggtggatctataaaa 153494
>emb|AL671532.13| Human DNA sequence from clone RP11-512A4 on chromosome 22, complete sequence Length = 211173 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 tctataaaattaaattcaagttca 453 |||||||| ||||||||||||||| Sbjct: 167300 tctataaatttaaattcaagttca 167323 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 430 tctataaaattaaattcaagttca 453 |||||||| ||||||||||||||| Sbjct: 154976 tctataaatttaaattcaagttca 154953
>emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C (3 of 5) Length = 893329 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 aattcaagttcatactcata 461 |||||||||||||||||||| Sbjct: 287981 aattcaagttcatactcata 288000
>gb|AE003559.3| Drosophila melanogaster chromosome 3L, section 26 of 83 of the complete sequence Length = 269948 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 tggatctataaaattaaatt 445 |||||||||||||||||||| Sbjct: 215849 tggatctataaaattaaatt 215868
>emb|AL805972.11| Mouse DNA sequence from clone RP23-211P15 on chromosome 4, complete sequence Length = 223059 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 tattgtaggtggatctataa 436 |||||||||||||||||||| Sbjct: 151592 tattgtaggtggatctataa 151611
>emb|AL954337.9| Zebrafish DNA sequence from clone CH211-223J10 in linkage group 19, complete sequence Length = 205289 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 atgcctgatattaaatagct 333 |||||||||||||||||||| Sbjct: 141777 atgcctgatattaaatagct 141796 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,871,817 Number of Sequences: 3902068 Number of extensions: 5871817 Number of successful extensions: 125424 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 125082 Number of HSP's gapped (non-prelim): 345 length of query: 473 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 451 effective length of database: 17,147,199,772 effective search space: 7733387097172 effective search space used: 7733387097172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
