ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXOC5_ARATH (Q8RVQ5) Exocyst complex component 5 (Exocyst comple... 181 2e-45
2PTPA2_KLULA (Q6CKF0) Serine/threonine-protein phosphatase 2A act... 31 2.6
3NUCB1_HUMAN (Q02818) Nucleobindin-1 precursor (CALNUC) 30 5.8
4ACO32_ARATH (Q9LMI7) Putative acyl-coenzyme A oxidase 3.2, perox... 30 5.8
5ACOX3_ARATH (Q9LLH9) Acyl-coenzyme A oxidase 3, peroxisomal prec... 29 7.6
6CARB_LACLC (O32771) Carbamoyl-phosphate synthase large chain (EC... 29 9.9
7CARB_LACLA (Q9CFV2) Carbamoyl-phosphate synthase large chain (EC... 29 9.9
8FER2_PLEBO (P46035) Ferredoxin-2 (Ferredoxin II) (FdII) 29 9.9

>EXOC5_ARATH (Q8RVQ5) Exocyst complex component 5 (Exocyst complex component|
           Sec10)
          Length = 829

 Score =  181 bits (458), Expect = 2e-45
 Identities = 100/179 (55%), Positives = 127/179 (70%), Gaps = 3/179 (1%)
 Frame = +3

Query: 18  LSAVGIWILKV---SLSLYMFHTRXEYTEFEHASLRQLYQSKMAELRAEAKQQSESTGSI 188
           L AVG   L V   + SL+  H + EY E E ASL+QLYQ+KM ELRAE++Q SES+G+I
Sbjct: 423 LRAVGCGDLDVEDLTESLFSSH-KDEYPEHERASLKQLYQAKMEELRAESQQVSESSGTI 481

Query: 189 GRAKGASLNTSPQQLISVTVVTEFVRWNEEAISRCTLLFSQPTTVAANVRSIFACLLDQV 368
           GR+KGAS+++S QQ ISVT VTEFVRWNEEAI+RCTL  SQP T+AANV++IF CLLDQV
Sbjct: 482 GRSKGASISSSLQQ-ISVTFVTEFVRWNEEAITRCTLFSSQPATLAANVKAIFTCLLDQV 540

Query: 369 SQYLTVGLDGARESLNEAAAMRDRYVIGTXXXXXXXXXXXXXXXXXXXXXXXXFRSFMM 545
           S Y+T GL+ AR+SL+EAAA+R+R+V+GT                        F+SFM+
Sbjct: 541 SVYITEGLERARDSLSEAAALRERFVLGTSVSRRVAAAAASAAEAAAAAGESSFKSFMV 599



 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 17/26 (65%), Positives = 23/26 (88%)
 Frame = +2

Query: 2   AKXLQSIGCGDLDIEGLTESIYVSHK 79
           AK L+++GCGDLD+E LTES++ SHK
Sbjct: 420 AKDLRAVGCGDLDVEDLTESLFSSHK 445



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>PTPA2_KLULA (Q6CKF0) Serine/threonine-protein phosphatase 2A activator 2 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-2)
           (PPIase PTPA-2) (Rotamase PTPA-2) (Phosphotyrosyl
           phosphatase activator 2)
          Length = 360

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -2

Query: 334 TLAATVVGWENNSVHLDIASSFQR-TNSVTTVTDISCCGEVFKDAPFAR 191
           TLA +V G ENN     I+ + QR +N ++ VT+I    EV KDA  +R
Sbjct: 30  TLALSVRGRENNDYTQPISDNVQRVSNLLSKVTEIIGKHEVIKDANTSR 78



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>NUCB1_HUMAN (Q02818) Nucleobindin-1 precursor (CALNUC)|
          Length = 461

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +3

Query: 87  YTEFEHASLRQLYQSKMAELRAEAKQQSESTGSIGRAKG 203
           YTE E     +   ++ AEL A+A++ S+ T ++GR++G
Sbjct: 342 YTEEELRRFEEELAAREAELNAKAQRLSQETEALGRSQG 380



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>ACO32_ARATH (Q9LMI7) Putative acyl-coenzyme A oxidase 3.2, peroxisomal|
           precursor (EC 1.3.3.6)
          Length = 675

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = -2

Query: 397 PSSPTVKYWLT*SSKHANMDLTLAATVVGWENNSVHLDIASSFQRTNSVTTVTDISCCG 221
           P     KYW+  ++ HAN  + ++   +   N  +H+ IA       +      I+ CG
Sbjct: 218 PCESAQKYWIGEAANHANHAIVISQLSMNGTNQGIHVFIAQIRDHDGNTCPNVRIADCG 276



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>ACOX3_ARATH (Q9LLH9) Acyl-coenzyme A oxidase 3, peroxisomal precursor (EC|
           1.3.3.6) (AOX 3) (Medium-chain acyl-CoA oxidase) (AtCX3)
          Length = 675

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = -2

Query: 397 PSSPTVKYWLT*SSKHANMDLTLAATVVGWENNSVHLDIASSFQRTNSVTTVTDISCCG 221
           P     KYW+  ++ HA   +  +   +   N  VH  IA    +  S+     I+ CG
Sbjct: 218 PCESAQKYWIGGAANHATHTIVFSQLHINGTNQGVHAFIAQIRDQDGSICPNIRIADCG 276



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>CARB_LACLC (O32771) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1064

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +3

Query: 204  ASLNTSPQQLISVTVVTEFVRWNEEAISRCTLLFSQPTTVAA 329
            A +NT      S+T  T+  R  +EAISR   LF+   TVAA
Sbjct: 1008 AVVNTMGNTRASLTTATDGFRIRQEAISRGIPLFTSLDTVAA 1049



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>CARB_LACLA (Q9CFV2) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1064

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +3

Query: 204  ASLNTSPQQLISVTVVTEFVRWNEEAISRCTLLFSQPTTVAA 329
            A +NT      S+T  T+  R  +EAISR   LF+   TVAA
Sbjct: 1008 AVVNTMGNTRASLTTATDGFRIRQEAISRGIPLFTSLDTVAA 1049



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>FER2_PLEBO (P46035) Ferredoxin-2 (Ferredoxin II) (FdII)|
          Length = 98

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 181 PVDSDCCLASALNSAIFD*-YSCLSDACSNSVYSXLV*NIYRLSETFNIQIPTADRLQLL 5
           PVD D  +  A   A  D  +SC S ACS+ V   +   I +  +TF  +   A    LL
Sbjct: 19  PVDEDTTVLEAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLL 78

Query: 4   C 2
           C
Sbjct: 79  C 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,825,580
Number of Sequences: 219361
Number of extensions: 1093188
Number of successful extensions: 2762
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2761
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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