ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK064983.1| Oryza sativa (japonica cultivar-group) cDNA clon... 428 e-117
2dbj|AK062178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 420 e-114
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 188 1e-44
5emb|AL732646.5|CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb... 188 1e-44
6emb|AL035448.29|HS742J24 Human DNA sequence from clone RP4-742J2... 44 0.47
7gb|AC113438.17| Mus musculus chromosome 6, clone RP23-191I2, com... 42 1.9
8gb|AC153432.9| Mus musculus 6 BAC RP23-110F19 (Roswell Park Canc... 42 1.9
9gb|AC102538.7| Mus musculus chromosome 3, clone RP23-80M16, comp... 40 7.4
10ref|XM_716931.1| Candida albicans SC5314 putative cytoplasmic me... 40 7.4
11ref|XM_716771.1| Candida albicans SC5314 putative cytoplasmic me... 40 7.4
12gb|AC125081.3| Mus musculus BAC clone RP24-89D17 from chromosome... 40 7.4
13emb|AL596445.2| Human DNA sequence from clone RP11-320B8 on chro... 40 7.4
14emb|X67814.1|GSPLSSEQ G.sulphuraria atp A, D, F, G, I and tsf, r... 40 7.4
15emb|AL591982.1| Listeria monocytogenes strain EGD, complete geno... 40 7.4
16gb|AC010182.16| Homo sapiens 12 BAC RP11-185N2 (Roswell Park Can... 40 7.4
17dbj|AK127539.1| Homo sapiens cDNA FLJ45632 fis, clone CHONS20018... 40 7.4
18ref|NM_020405.3| Homo sapiens plexin domain containing 1 (PLXDC1... 40 7.4
19gb|AC124148.15| Pan troglodytes clone rp43-71k6, complete sequence 40 7.4
20gb|AF378753.1|AF378753 Homo sapiens tumor endothelial marker 3 p... 40 7.4
21gb|AF243112.1|F243081S32 Homo sapiens intrinsic factor-vitamin B... 40 7.4
22gb|AF279144.2|AF279144 Homo sapiens tumor endothelial marker 7 p... 40 7.4
23gb|AC011595.13| Homo sapiens 12 BAC RP11-114F10 (Roswell Park Ca... 40 7.4
24dbj|AP003501.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.4

>dbj|AK064983.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C13, full
            insert sequence
          Length = 2881

 Score =  428 bits (216), Expect = e-117
 Identities = 403/464 (86%), Gaps = 1/464 (0%)
 Strand = Plus / Plus

                                                                        
Query: 9    agttgcagtctatcggctgtggggatttggatattgaaggtctcactgagtctatatatg 68
            ||||||| |||||| | |||||||||||||| ||||||||||||||||| || |||| ||
Sbjct: 1389 agttgcaatctatcagttgtggggatttggacattgaaggtctcactgaatccatatttg 1448

                                                                        
Query: 69   tttcacacaaggnatgagtacacggaattcgagcatgcatcactcagacagctatatcaa 128
            |||| ||||| | |||||||||| ||||| || || |||||||||||||| | ||| |||
Sbjct: 1449 tttcccacaaag-atgagtacacagaatttgaacaggcatcactcagacaacaataccaa 1507

                                                                        
Query: 129  tcaaagatggctgaattaagagctgaggccaagcaacaatctgaatcgactgggtcaatt 188
            ||||||||||||||||| ||||||||||||||||| |||||||| || |||||  |||||
Sbjct: 1508 tcaaagatggctgaattgagagctgaggccaagcagcaatctgagtcaactggcacaatt 1567

                                                                        
Query: 189  ggccgtgcaaaaggagcatctttgaatacctcaccacagcagctgatatcagttactgta 248
            || ||| |||| |||||  || ||| ||| ||||  ||||||| ||||||||||||||||
Sbjct: 1568 ggacgttcaaatggagcggctgtgactacatcacttcagcagcagatatcagttactgta 1627

                                                                        
Query: 249  gtgaccgaatttgttcgttggaatgaggaagcaatatcgagatgcacactgttgttttcc 308
            ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 1628 gtgactgaatttgttcgctggaatgaggaagcaatatctagatgcacactgttgttttct 1687

                                                                        
Query: 309  cagcctactaccgttgcagctaatgtcagatccatatttgcgtgtttgcttgatcaagtc 368
            |||||| |||| |||||||||||||| |||||||||||||| || |||||||||||||| 
Sbjct: 1688 cagcctgctactgttgcagctaatgtgagatccatatttgcatgcttgcttgatcaagta 1747

                                                                        
Query: 369  agccaatatttaactgttgggcttgacggtgctagagagagtttgaacgaggctgcagct 428
            ||||||||||| ||||  |||||||||  ||||||||||||||| ||  | || ||| ||
Sbjct: 1748 agccaatatttgactgaagggcttgaccatgctagagagagtttaaatcatgcagcaact 1807

                                                        
Query: 429  atgagggatagatatgtcatcggtacaagtgttagtagaagggt 472
                |||||||||||||||| || ||||||||||||||||||||
Sbjct: 1808 caacgggatagatatgtcattggaacaagtgttagtagaagggt 1851



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                        
Query: 517  gtgagagtagctttagatccttcatgat 544
            ||||||||||||||||||||||||||||
Sbjct: 1896 gtgagagtagctttagatccttcatgat 1923



to top

>dbj|AK062178.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-D06, full
           insert sequence
          Length = 1535

 Score =  420 bits (212), Expect = e-114
 Identities = 402/464 (86%), Gaps = 1/464 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   agttgcagtctatcggctgtggggatttggatattgaaggtctcactgagtctatatatg 68
           ||||||| |||||| | |||||||||||||| ||||||||||||||||| || |||| ||
Sbjct: 36  agttgcaatctatcagttgtggggatttggacattgaaggtctcactgaatccatatttg 95

                                                                       
Query: 69  tttcacacaaggnatgagtacacggaattcgagcatgcatcactcagacagctatatcaa 128
           |||| ||||| | |||||||||| ||||| || || |||||||||||||| | ||| |||
Sbjct: 96  tttcccacaaag-atgagtacacagaatttgaacaggcatcactcagacaacaataccaa 154

                                                                       
Query: 129 tcaaagatggctgaattaagagctgaggccaagcaacaatctgaatcgactgggtcaatt 188
           ||||||||||||||||| ||||||||||||||||| |||||||| || |||||  |||||
Sbjct: 155 tcaaagatggctgaattgagagctgaggccaagcagcaatctgagtcaactggcacaatt 214

                                                                       
Query: 189 ggccgtgcaaaaggagcatctttgaatacctcaccacagcagctgatatcagttactgta 248
           || ||| |||| |||||  || ||| ||| ||||  ||||||| ||||||||||||||||
Sbjct: 215 ggacgttcaaatggagcggctgtgactacatcacttcagcagcagatatcagttactgta 274

                                                                       
Query: 249 gtgaccgaatttgttcgttggaatgaggaagcaatatcgagatgcacactgttgttttcc 308
           ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 275 gtgactgaatttgttcgctggaatgaggaagcaatatctagatgcacactgttgttttct 334

                                                                       
Query: 309 cagcctactaccgttgcagctaatgtcagatccatatttgcgtgtttgcttgatcaagtc 368
           |||||| |||| |||||||||||||| |||||||||||||| || |||||||||||||| 
Sbjct: 335 cagcctgctactgttgcagctaatgtgagatccatatttgcatgcttgcttgatcaagta 394

                                                                       
Query: 369 agccaatatttaactgttgggcttgacggtgctagagagagtttgaacgaggctgcagct 428
           ||||||||||| ||||  ||||||| |  ||||||||||||||| ||  | || ||| ||
Sbjct: 395 agccaatatttgactgaagggcttggccatgctagagagagtttaaatcatgcagcaact 454

                                                       
Query: 429 atgagggatagatatgtcatcggtacaagtgttagtagaagggt 472
               |||||||||||||||| || ||||||||||||||||||||
Sbjct: 455 caacgggatagatatgtcattggaacaagtgttagtagaagggt 498



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 517 gtgagagtagctttagatccttcatgat 544
           ||||||||||||||||||||||||||||
Sbjct: 543 gtgagagtagctttagatccttcatgat 570



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  188 bits (95), Expect = 1e-44
 Identities = 155/175 (88%)
 Strand = Plus / Minus

                                                                           
Query: 133     agatggctgaattaagagctgaggccaagcaacaatctgaatcgactgggtcaattggcc 192
               ||||||||||||| ||||||||||||||||| |||||||| || |||||  ||||||| |
Sbjct: 7632311 agatggctgaattgagagctgaggccaagcagcaatctgagtcaactggcacaattggac 7632252

                                                                           
Query: 193     gtgcaaaaggagcatctttgaatacctcaccacagcagctgatatcagttactgtagtga 252
               || |||| |||||  || ||| ||| ||||  ||||||| ||||||||||||||||||||
Sbjct: 7632251 gttcaaatggagcggctgtgactacatcacttcagcagcagatatcagttactgtagtga 7632192

                                                                      
Query: 253     ccgaatttgttcgttggaatgaggaagcaatatcgagatgcacactgttgttttc 307
               | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7632191 ctgaatttgttcgctggaatgaggaagcaatatctagatgcacactgttgttttc 7632137



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                          
Query: 309     cagcctactaccgttgcagctaatgtcagatccatatttgcgtgtttgcttgatcaagt 367
               |||||| |||| |||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 7631915 cagcctgctactgttgcagctaatgtgagatccatatttgcatgcttgcttgatcaagt 7631857



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 87/104 (83%)
 Strand = Plus / Minus

                                                                           
Query: 369     agccaatatttaactgttgggcttgacggtgctagagagagtttgaacgaggctgcagct 428
               ||||||||||| ||||  |||||||||  ||||||||||||||| ||  | || ||| ||
Sbjct: 7631767 agccaatatttgactgaagggcttgaccatgctagagagagtttaaatcatgcagcaact 7631708

                                                           
Query: 429     atgagggatagatatgtcatcggtacaagtgttagtagaagggt 472
                   |||||||||||||||| || ||||||||||||||||||||
Sbjct: 7631707 caacgggatagatatgtcattggaacaagtgttagtagaagggt 7631664



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 76/89 (85%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                           
Query: 46      aggtctcactgagtctatatatgtttcacacaaggnatgagtacacggaattcgagcatg 105
               |||||||||||| || |||| |||||| ||||| | |||||||||| ||||| || || |
Sbjct: 7632483 aggtctcactgaatccatatttgtttcccacaaag-atgagtacacagaatttgaacagg 7632425

                                            
Query: 106     catcactcagacagctatatcaatcaaag 134
               ||||||||||||| | ||| |||||||||
Sbjct: 7632424 catcactcagacaacaataccaatcaaag 7632396



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                           
Query: 517     gtgagagtagctttagatccttcatgat 544
               ||||||||||||||||||||||||||||
Sbjct: 7631503 gtgagagtagctttagatccttcatgat 7631476



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                        
Query: 9       agttgcagtctatcggctgtggggatttggatattgaaggt 49
               ||||||| |||||| | |||||||||||||| |||||||||
Sbjct: 7634272 agttgcaatctatcagttgtggggatttggacattgaaggt 7634232



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  188 bits (95), Expect = 1e-44
 Identities = 155/175 (88%)
 Strand = Plus / Minus

                                                                           
Query: 133     agatggctgaattaagagctgaggccaagcaacaatctgaatcgactgggtcaattggcc 192
               ||||||||||||| ||||||||||||||||| |||||||| || |||||  ||||||| |
Sbjct: 7632192 agatggctgaattgagagctgaggccaagcagcaatctgagtcaactggcacaattggac 7632133

                                                                           
Query: 193     gtgcaaaaggagcatctttgaatacctcaccacagcagctgatatcagttactgtagtga 252
               || |||| |||||  || ||| ||| ||||  ||||||| ||||||||||||||||||||
Sbjct: 7632132 gttcaaatggagcggctgtgactacatcacttcagcagcagatatcagttactgtagtga 7632073

                                                                      
Query: 253     ccgaatttgttcgttggaatgaggaagcaatatcgagatgcacactgttgttttc 307
               | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7632072 ctgaatttgttcgctggaatgaggaagcaatatctagatgcacactgttgttttc 7632018



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                          
Query: 309     cagcctactaccgttgcagctaatgtcagatccatatttgcgtgtttgcttgatcaagt 367
               |||||| |||| |||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 7631796 cagcctgctactgttgcagctaatgtgagatccatatttgcatgcttgcttgatcaagt 7631738



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 87/104 (83%)
 Strand = Plus / Minus

                                                                           
Query: 369     agccaatatttaactgttgggcttgacggtgctagagagagtttgaacgaggctgcagct 428
               ||||||||||| ||||  |||||||||  ||||||||||||||| ||  | || ||| ||
Sbjct: 7631648 agccaatatttgactgaagggcttgaccatgctagagagagtttaaatcatgcagcaact 7631589

                                                           
Query: 429     atgagggatagatatgtcatcggtacaagtgttagtagaagggt 472
                   |||||||||||||||| || ||||||||||||||||||||
Sbjct: 7631588 caacgggatagatatgtcattggaacaagtgttagtagaagggt 7631545



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 76/89 (85%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                           
Query: 46      aggtctcactgagtctatatatgtttcacacaaggnatgagtacacggaattcgagcatg 105
               |||||||||||| || |||| |||||| ||||| | |||||||||| ||||| || || |
Sbjct: 7632364 aggtctcactgaatccatatttgtttcccacaaag-atgagtacacagaatttgaacagg 7632306

                                            
Query: 106     catcactcagacagctatatcaatcaaag 134
               ||||||||||||| | ||| |||||||||
Sbjct: 7632305 catcactcagacaacaataccaatcaaag 7632277



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                           
Query: 517     gtgagagtagctttagatccttcatgat 544
               ||||||||||||||||||||||||||||
Sbjct: 7631384 gtgagagtagctttagatccttcatgat 7631357



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                        
Query: 9       agttgcagtctatcggctgtggggatttggatattgaaggt 49
               ||||||| |||||| | |||||||||||||| |||||||||
Sbjct: 7634153 agttgcaatctatcagttgtggggatttggacattgaaggt 7634113



to top

>emb|AL732646.5|CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb0001P17 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151024

 Score =  188 bits (95), Expect = 1e-44
 Identities = 155/175 (88%)
 Strand = Plus / Minus

                                                                         
Query: 133   agatggctgaattaagagctgaggccaagcaacaatctgaatcgactgggtcaattggcc 192
             ||||||||||||| ||||||||||||||||| |||||||| || |||||  ||||||| |
Sbjct: 19704 agatggctgaattgagagctgaggccaagcagcaatctgagtcaactggcacaattggac 19645

                                                                         
Query: 193   gtgcaaaaggagcatctttgaatacctcaccacagcagctgatatcagttactgtagtga 252
             || |||| |||||  || ||| ||| ||||  ||||||| ||||||||||||||||||||
Sbjct: 19644 gttcaaatggagcggctgtgactacatcacttcagcagcagatatcagttactgtagtga 19585

                                                                    
Query: 253   ccgaatttgttcgttggaatgaggaagcaatatcgagatgcacactgttgttttc 307
             | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 19584 ctgaatttgttcgctggaatgaggaagcaatatctagatgcacactgttgttttc 19530



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                        
Query: 309   cagcctactaccgttgcagctaatgtcagatccatatttgcgtgtttgcttgatcaagt 367
             |||||| |||| |||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 19308 cagcctgctactgttgcagctaatgtgagatccatatttgcatgcttgcttgatcaagt 19250



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 87/104 (83%)
 Strand = Plus / Minus

                                                                         
Query: 369   agccaatatttaactgttgggcttgacggtgctagagagagtttgaacgaggctgcagct 428
             ||||||||||| ||||  |||||||||  ||||||||||||||| ||  | || ||| ||
Sbjct: 19160 agccaatatttgactgaagggcttgaccatgctagagagagtttaaatcatgcagcaact 19101

                                                         
Query: 429   atgagggatagatatgtcatcggtacaagtgttagtagaagggt 472
                 |||||||||||||||| || ||||||||||||||||||||
Sbjct: 19100 caacgggatagatatgtcattggaacaagtgttagtagaagggt 19057



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 76/89 (85%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                         
Query: 46    aggtctcactgagtctatatatgtttcacacaaggnatgagtacacggaattcgagcatg 105
             |||||||||||| || |||| |||||| ||||| | |||||||||| ||||| || || |
Sbjct: 19876 aggtctcactgaatccatatttgtttcccacaaag-atgagtacacagaatttgaacagg 19818

                                          
Query: 106   catcactcagacagctatatcaatcaaag 134
             ||||||||||||| | ||| |||||||||
Sbjct: 19817 catcactcagacaacaataccaatcaaag 19789



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                         
Query: 517   gtgagagtagctttagatccttcatgat 544
             ||||||||||||||||||||||||||||
Sbjct: 18896 gtgagagtagctttagatccttcatgat 18869



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 9     agttgcagtctatcggctgtggggatttggatattgaaggt 49
             ||||||| |||||| | |||||||||||||| |||||||||
Sbjct: 21665 agttgcaatctatcagttgtggggatttggacattgaaggt 21625



to top

>emb|AL035448.29|HS742J24 Human DNA sequence from clone RP4-742J24 on chromosome 20p11.23-12.3
              Contains the BTBD3 gene for BTB (POZ) domain containing 3
              (KIAA0952), a novel gene and a CpG island, complete
              sequence
          Length = 167075

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 146    aagagctgaggccaagcaacaa 167
              ||||||||||||||||||||||
Sbjct: 132297 aagagctgaggccaagcaacaa 132276



to top

>gb|AC113438.17| Mus musculus chromosome 6, clone RP23-191I2, complete sequence
          Length = 221969

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 324    gcagctaatgtcagatccata 344
              |||||||||||||||||||||
Sbjct: 208440 gcagctaatgtcagatccata 208460



to top

>gb|AC153432.9| Mus musculus 6 BAC RP23-110F19 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 189225

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 324    gcagctaatgtcagatccata 344
              |||||||||||||||||||||
Sbjct: 142291 gcagctaatgtcagatccata 142271



to top

>gb|AC102538.7| Mus musculus chromosome 3, clone RP23-80M16, complete sequence
          Length = 134108

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    tcactcagacagctatatca 127
              ||||||||||||||||||||
Sbjct: 121582 tcactcagacagctatatca 121563



to top

>ref|XM_716931.1| Candida albicans SC5314 putative cytoplasmic methionyl tRNA
            synthetase (CaO19_11437), mRNA
          Length = 2247

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 293  cacactgttgttttcccagc 312
            ||||||||||||||||||||
Sbjct: 1462 cacactgttgttttcccagc 1481



to top

>ref|XM_716771.1| Candida albicans SC5314 putative cytoplasmic methionyl tRNA
            synthetase (CaO19_3955), mRNA
          Length = 2247

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 293  cacactgttgttttcccagc 312
            ||||||||||||||||||||
Sbjct: 1462 cacactgttgttttcccagc 1481



to top

>gb|AC125081.3| Mus musculus BAC clone RP24-89D17 from chromosome 3, complete sequence
          Length = 220895

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    caaaaggagcatctttgaat 215
              ||||||||||||||||||||
Sbjct: 136086 caaaaggagcatctttgaat 136067



to top

>emb|AL596445.2| Human DNA sequence from clone RP11-320B8 on chromosome 10 Contains
            part of the CUBN gene for cubilin (intrinsic
            factor-cobalamin receptor), complete sequence
          Length = 12722

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  gatatcagttactgtagtga 252
            ||||||||||||||||||||
Sbjct: 2299 gatatcagttactgtagtga 2280



to top

>emb|X67814.1|GSPLSSEQ G.sulphuraria atp A, D, F, G, I and tsf, rps2, rpoD, orf257, orfX
           genes for ATP synthase, elongation factor TS, ribosomal
           protein 2 and RNA polymerase-beta''
          Length = 7549

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 tatatcaatcaaagatggct 140
           ||||||||||||||||||||
Sbjct: 574 tatatcaatcaaagatggct 593



to top

>emb|AL591982.1| Listeria monocytogenes strain EGD, complete genome, segment 10/12
          Length = 295050

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    tgttttcccagcctactacc 320
              ||||||||||||||||||||
Sbjct: 125019 tgttttcccagcctactacc 125038



to top

>gb|AC010182.16| Homo sapiens 12 BAC RP11-185N2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 165139

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    gtggggatttggatattgaa 46
             ||||||||||||||||||||
Sbjct: 37045 gtggggatttggatattgaa 37026



to top

>dbj|AK127539.1| Homo sapiens cDNA FLJ45632 fis, clone CHONS2001834, highly  similar
           to Homo sapiens tumor endothelial marker 7 precursor
           (TEM7)
          Length = 2604

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aaggagcatctttgaatacc 218
           ||||||||||||||||||||
Sbjct: 851 aaggagcatctttgaatacc 870



to top

>ref|NM_020405.3| Homo sapiens plexin domain containing 1 (PLXDC1), mRNA
          Length = 6140

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aaggagcatctttgaatacc 218
           ||||||||||||||||||||
Sbjct: 904 aaggagcatctttgaatacc 923



to top

>gb|AC124148.15| Pan troglodytes clone rp43-71k6, complete sequence
          Length = 194187

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    gatatcagttactgtagtga 252
              ||||||||||||||||||||
Sbjct: 187080 gatatcagttactgtagtga 187099



to top

>gb|AF378753.1|AF378753 Homo sapiens tumor endothelial marker 3 precursor (TEM7) mRNA,
           complete cds
          Length = 6140

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aaggagcatctttgaatacc 218
           ||||||||||||||||||||
Sbjct: 904 aaggagcatctttgaatacc 923



to top

>gb|AF243112.1|F243081S32 Homo sapiens intrinsic factor-vitamin B12 receptor (CUBN) gene,
           exon 46
          Length = 1469

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 233 gatatcagttactgtagtga 252
           ||||||||||||||||||||
Sbjct: 75  gatatcagttactgtagtga 94



to top

>gb|AF279144.2|AF279144 Homo sapiens tumor endothelial marker 7 precursor (TEM7) mRNA,
           complete cds
          Length = 2320

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 aaggagcatctttgaatacc 218
           ||||||||||||||||||||
Sbjct: 904 aaggagcatctttgaatacc 923



to top

>gb|AC011595.13| Homo sapiens 12 BAC RP11-114F10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152358

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     gtggggatttggatattgaa 46
              ||||||||||||||||||||
Sbjct: 125914 gtggggatttggatattgaa 125895



to top

>dbj|AP003501.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-664I21, complete
             sequence
          Length = 186971

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   gaggccaagcaacaatctgaatcg 176
             ||||| ||||||||||||||||||
Sbjct: 46592 gaggcaaagcaacaatctgaatcg 46569


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,621,815
Number of Sequences: 3902068
Number of extensions: 3621815
Number of successful extensions: 99184
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99092
Number of HSP's gapped (non-prelim): 87
length of query: 545
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 522
effective length of database: 17,143,297,704
effective search space: 8948801401488
effective search space used: 8948801401488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top