No.
Definition
Score (bits)
E Value
1 dbj|AK064983.1| Oryza sativa (japonica cultivar-group) cDNA clon...
428
e-117
2 dbj|AK062178.1| Oryza sativa (japonica cultivar-group) cDNA clon...
420
e-114
3 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
188
1e-44
4 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
188
1e-44
5 emb|AL732646.5|CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb...
188
1e-44
6 emb|AL035448.29|HS742J24 Human DNA sequence from clone RP4-742J2...
44
0.47
7 gb|AC113438.17| Mus musculus chromosome 6, clone RP23-191I2, com...
42
1.9
8 gb|AC153432.9| Mus musculus 6 BAC RP23-110F19 (Roswell Park Canc...
42
1.9
9 gb|AC102538.7| Mus musculus chromosome 3, clone RP23-80M16, comp...
40
7.4
10 ref|XM_716931.1| Candida albicans SC5314 putative cytoplasmic me...
40
7.4
11 ref|XM_716771.1| Candida albicans SC5314 putative cytoplasmic me...
40
7.4
12 gb|AC125081.3| Mus musculus BAC clone RP24-89D17 from chromosome...
40
7.4
13 emb|AL596445.2| Human DNA sequence from clone RP11-320B8 on chro...
40
7.4
14 emb|X67814.1|GSPLSSEQ G.sulphuraria atp A, D, F, G, I and tsf, r...
40
7.4
15 emb|AL591982.1| Listeria monocytogenes strain EGD, complete geno...
40
7.4
16 gb|AC010182.16| Homo sapiens 12 BAC RP11-185N2 (Roswell Park Can...
40
7.4
17 dbj|AK127539.1| Homo sapiens cDNA FLJ45632 fis, clone CHONS20018...
40
7.4
18 ref|NM_020405.3| Homo sapiens plexin domain containing 1 (PLXDC1...
40
7.4
19 gb|AC124148.15| Pan troglodytes clone rp43-71k6, complete sequence
40
7.4
20 gb|AF378753.1|AF378753 Homo sapiens tumor endothelial marker 3 p...
40
7.4
21 gb|AF243112.1|F243081S32 Homo sapiens intrinsic factor-vitamin B...
40
7.4
22 gb|AF279144.2|AF279144 Homo sapiens tumor endothelial marker 7 p...
40
7.4
23 gb|AC011595.13| Homo sapiens 12 BAC RP11-114F10 (Roswell Park Ca...
40
7.4
24 dbj|AP003501.2| Homo sapiens genomic DNA, chromosome 11q, clone:...
40
7.4
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 188 bits (95), Expect = 1e-44
Identities = 155/175 (88%)
Strand = Plus / Minus
Query: 133 agatggctgaattaagagctgaggccaagcaacaatctgaatcgactgggtcaattggcc 192
||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||||| |
Sbjct: 7632311 agatggctgaattgagagctgaggccaagcagcaatctgagtcaactggcacaattggac 7632252
Query: 193 gtgcaaaaggagcatctttgaatacctcaccacagcagctgatatcagttactgtagtga 252
|| |||| ||||| || ||| ||| |||| ||||||| ||||||||||||||||||||
Sbjct: 7632251 gttcaaatggagcggctgtgactacatcacttcagcagcagatatcagttactgtagtga 7632192
Query: 253 ccgaatttgttcgttggaatgaggaagcaatatcgagatgcacactgttgttttc 307
| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7632191 ctgaatttgttcgctggaatgaggaagcaatatctagatgcacactgttgttttc 7632137
Score = 77.8 bits (39), Expect = 3e-11
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 309 cagcctactaccgttgcagctaatgtcagatccatatttgcgtgtttgcttgatcaagt 367
|||||| |||| |||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 7631915 cagcctgctactgttgcagctaatgtgagatccatatttgcatgcttgcttgatcaagt 7631857
Score = 71.9 bits (36), Expect = 2e-09
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 369 agccaatatttaactgttgggcttgacggtgctagagagagtttgaacgaggctgcagct 428
||||||||||| |||| ||||||||| ||||||||||||||| || | || ||| ||
Sbjct: 7631767 agccaatatttgactgaagggcttgaccatgctagagagagtttaaatcatgcagcaact 7631708
Query: 429 atgagggatagatatgtcatcggtacaagtgttagtagaagggt 472
|||||||||||||||| || ||||||||||||||||||||
Sbjct: 7631707 caacgggatagatatgtcattggaacaagtgttagtagaagggt 7631664
Score = 65.9 bits (33), Expect = 1e-07
Identities = 76/89 (85%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 46 aggtctcactgagtctatatatgtttcacacaaggnatgagtacacggaattcgagcatg 105
|||||||||||| || |||| |||||| ||||| | |||||||||| ||||| || || |
Sbjct: 7632483 aggtctcactgaatccatatttgtttcccacaaag-atgagtacacagaatttgaacagg 7632425
Query: 106 catcactcagacagctatatcaatcaaag 134
||||||||||||| | ||| |||||||||
Sbjct: 7632424 catcactcagacaacaataccaatcaaag 7632396
Score = 56.0 bits (28), Expect = 1e-04
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 517 gtgagagtagctttagatccttcatgat 544
||||||||||||||||||||||||||||
Sbjct: 7631503 gtgagagtagctttagatccttcatgat 7631476
Score = 50.1 bits (25), Expect = 0.008
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 agttgcagtctatcggctgtggggatttggatattgaaggt 49
||||||| |||||| | |||||||||||||| |||||||||
Sbjct: 7634272 agttgcaatctatcagttgtggggatttggacattgaaggt 7634232
>gb|DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 188 bits (95), Expect = 1e-44
Identities = 155/175 (88%)
Strand = Plus / Minus
Query: 133 agatggctgaattaagagctgaggccaagcaacaatctgaatcgactgggtcaattggcc 192
||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||||| |
Sbjct: 7632192 agatggctgaattgagagctgaggccaagcagcaatctgagtcaactggcacaattggac 7632133
Query: 193 gtgcaaaaggagcatctttgaatacctcaccacagcagctgatatcagttactgtagtga 252
|| |||| ||||| || ||| ||| |||| ||||||| ||||||||||||||||||||
Sbjct: 7632132 gttcaaatggagcggctgtgactacatcacttcagcagcagatatcagttactgtagtga 7632073
Query: 253 ccgaatttgttcgttggaatgaggaagcaatatcgagatgcacactgttgttttc 307
| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7632072 ctgaatttgttcgctggaatgaggaagcaatatctagatgcacactgttgttttc 7632018
Score = 77.8 bits (39), Expect = 3e-11
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 309 cagcctactaccgttgcagctaatgtcagatccatatttgcgtgtttgcttgatcaagt 367
|||||| |||| |||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 7631796 cagcctgctactgttgcagctaatgtgagatccatatttgcatgcttgcttgatcaagt 7631738
Score = 71.9 bits (36), Expect = 2e-09
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 369 agccaatatttaactgttgggcttgacggtgctagagagagtttgaacgaggctgcagct 428
||||||||||| |||| ||||||||| ||||||||||||||| || | || ||| ||
Sbjct: 7631648 agccaatatttgactgaagggcttgaccatgctagagagagtttaaatcatgcagcaact 7631589
Query: 429 atgagggatagatatgtcatcggtacaagtgttagtagaagggt 472
|||||||||||||||| || ||||||||||||||||||||
Sbjct: 7631588 caacgggatagatatgtcattggaacaagtgttagtagaagggt 7631545
Score = 65.9 bits (33), Expect = 1e-07
Identities = 76/89 (85%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 46 aggtctcactgagtctatatatgtttcacacaaggnatgagtacacggaattcgagcatg 105
|||||||||||| || |||| |||||| ||||| | |||||||||| ||||| || || |
Sbjct: 7632364 aggtctcactgaatccatatttgtttcccacaaag-atgagtacacagaatttgaacagg 7632306
Query: 106 catcactcagacagctatatcaatcaaag 134
||||||||||||| | ||| |||||||||
Sbjct: 7632305 catcactcagacaacaataccaatcaaag 7632277
Score = 56.0 bits (28), Expect = 1e-04
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 517 gtgagagtagctttagatccttcatgat 544
||||||||||||||||||||||||||||
Sbjct: 7631384 gtgagagtagctttagatccttcatgat 7631357
Score = 50.1 bits (25), Expect = 0.008
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 agttgcagtctatcggctgtggggatttggatattgaaggt 49
||||||| |||||| | |||||||||||||| |||||||||
Sbjct: 7634153 agttgcaatctatcagttgtggggatttggacattgaaggt 7634113
>emb|AL732646.5 |CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb0001P17 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 151024
Score = 188 bits (95), Expect = 1e-44
Identities = 155/175 (88%)
Strand = Plus / Minus
Query: 133 agatggctgaattaagagctgaggccaagcaacaatctgaatcgactgggtcaattggcc 192
||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||||| |
Sbjct: 19704 agatggctgaattgagagctgaggccaagcagcaatctgagtcaactggcacaattggac 19645
Query: 193 gtgcaaaaggagcatctttgaatacctcaccacagcagctgatatcagttactgtagtga 252
|| |||| ||||| || ||| ||| |||| ||||||| ||||||||||||||||||||
Sbjct: 19644 gttcaaatggagcggctgtgactacatcacttcagcagcagatatcagttactgtagtga 19585
Query: 253 ccgaatttgttcgttggaatgaggaagcaatatcgagatgcacactgttgttttc 307
| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 19584 ctgaatttgttcgctggaatgaggaagcaatatctagatgcacactgttgttttc 19530
Score = 77.8 bits (39), Expect = 3e-11
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 309 cagcctactaccgttgcagctaatgtcagatccatatttgcgtgtttgcttgatcaagt 367
|||||| |||| |||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 19308 cagcctgctactgttgcagctaatgtgagatccatatttgcatgcttgcttgatcaagt 19250
Score = 71.9 bits (36), Expect = 2e-09
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 369 agccaatatttaactgttgggcttgacggtgctagagagagtttgaacgaggctgcagct 428
||||||||||| |||| ||||||||| ||||||||||||||| || | || ||| ||
Sbjct: 19160 agccaatatttgactgaagggcttgaccatgctagagagagtttaaatcatgcagcaact 19101
Query: 429 atgagggatagatatgtcatcggtacaagtgttagtagaagggt 472
|||||||||||||||| || ||||||||||||||||||||
Sbjct: 19100 caacgggatagatatgtcattggaacaagtgttagtagaagggt 19057
Score = 65.9 bits (33), Expect = 1e-07
Identities = 76/89 (85%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 46 aggtctcactgagtctatatatgtttcacacaaggnatgagtacacggaattcgagcatg 105
|||||||||||| || |||| |||||| ||||| | |||||||||| ||||| || || |
Sbjct: 19876 aggtctcactgaatccatatttgtttcccacaaag-atgagtacacagaatttgaacagg 19818
Query: 106 catcactcagacagctatatcaatcaaag 134
||||||||||||| | ||| |||||||||
Sbjct: 19817 catcactcagacaacaataccaatcaaag 19789
Score = 56.0 bits (28), Expect = 1e-04
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 517 gtgagagtagctttagatccttcatgat 544
||||||||||||||||||||||||||||
Sbjct: 18896 gtgagagtagctttagatccttcatgat 18869
Score = 50.1 bits (25), Expect = 0.008
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 agttgcagtctatcggctgtggggatttggatattgaaggt 49
||||||| |||||| | |||||||||||||| |||||||||
Sbjct: 21665 agttgcaatctatcagttgtggggatttggacattgaaggt 21625
>emb|X67814.1 |GSPLSSEQ G.sulphuraria atp A, D, F, G, I and tsf, rps2, rpoD, orf257, orfX
genes for ATP synthase, elongation factor TS, ribosomal
protein 2 and RNA polymerase-beta''
Length = 7549
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 121 tatatcaatcaaagatggct 140
||||||||||||||||||||
Sbjct: 574 tatatcaatcaaagatggct 593
>dbj|AP003501.2 | Homo sapiens genomic DNA, chromosome 11q, clone:RP11-664I21, complete
sequence
Length = 186971
Score = 40.1 bits (20), Expect = 7.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 153 gaggccaagcaacaatctgaatcg 176
||||| ||||||||||||||||||
Sbjct: 46592 gaggcaaagcaacaatctgaatcg 46569
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,621,815
Number of Sequences: 3902068
Number of extensions: 3621815
Number of successful extensions: 99184
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99092
Number of HSP's gapped (non-prelim): 87
length of query: 545
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 522
effective length of database: 17,143,297,704
effective search space: 8948801401488
effective search space used: 8948801401488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)