ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags9e22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191138.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2295 Score = 494 bits (249), Expect = e-136 Identities = 345/376 (91%), Gaps = 1/376 (0%) Strand = Plus / Plus Query: 29 tcctcttcttgctgctcatagggcattgccacggcggcaagnaccggcatctgctacggc 88 ||||||||||||||||| | |||||||||| ||| |||||| ||||||||||||||| Sbjct: 26 tcctcttcttgctgctcgtcgggcattgcctcggaggcaaggtt-ggcatctgctacggc 84 Query: 89 cgcaacgccgacgacctgccggggcccgacaaggtggcgcagctcatccagcagcagtcc 148 ||||||||||| |||||||||| ||| |||||||||| ||||||||||||||||||||| Sbjct: 85 cgcaacgccgatgacctgccggcgccggacaaggtggtgcagctcatccagcagcagtcg 144 Query: 149 atcaagtacgtgcgcatctacgacgccaacgtcgacgtcatcaaggccttcgccaacacc 208 ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 145 ctcaagtacgtgcgcatctacgacaccaacatcgacgtcatcaaggccttcgccaacacc 204 Query: 209 agcgtggagctcatggtcggcgtccccaacgccgacctcctcgccttctcgcagtaccag 268 |||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct: 205 ggcgtcgagctcatggtcggcgtccccaactccgacctcctccccttcgcgcagtaccag 264 Query: 269 tccaacgtcgacacctggctcaagaacagcatcctcccctactacccggccaccgccatc 328 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 265 tccaacgtcgatacctggctcaagaacagcatcctcccctactacccggccaccatgatc 324 Query: 329 acctacatcaccgtcggcgccgagatcaccgagagcaccatcaacgtctcctccctcgtc 388 |||||||||||||||||||||||| ||||||||||| || ||||||| ||| |||||||| Sbjct: 325 acctacatcaccgtcggcgccgaggtcaccgagagccccgtcaacgtgtccgccctcgtc 384 Query: 389 gtgccggccatgcgca 404 ||||| |||||||||| Sbjct: 385 gtgcctgccatgcgca 400
>dbj|AK063960.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G07, full insert sequence Length = 1965 Score = 494 bits (249), Expect = e-136 Identities = 345/376 (91%), Gaps = 1/376 (0%) Strand = Plus / Plus Query: 29 tcctcttcttgctgctcatagggcattgccacggcggcaagnaccggcatctgctacggc 88 ||||||||||||||||| | |||||||||| ||| |||||| ||||||||||||||| Sbjct: 252 tcctcttcttgctgctcgtcgggcattgcctcggaggcaaggtt-ggcatctgctacggc 310 Query: 89 cgcaacgccgacgacctgccggggcccgacaaggtggcgcagctcatccagcagcagtcc 148 ||||||||||| |||||||||| ||| |||||||||| ||||||||||||||||||||| Sbjct: 311 cgcaacgccgatgacctgccggcgccggacaaggtggtgcagctcatccagcagcagtcg 370 Query: 149 atcaagtacgtgcgcatctacgacgccaacgtcgacgtcatcaaggccttcgccaacacc 208 ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 371 ctcaagtacgtgcgcatctacgacaccaacatcgacgtcatcaaggccttcgccaacacc 430 Query: 209 agcgtggagctcatggtcggcgtccccaacgccgacctcctcgccttctcgcagtaccag 268 |||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct: 431 ggcgtcgagctcatggtcggcgtccccaactccgacctcctccccttcgcgcagtaccag 490 Query: 269 tccaacgtcgacacctggctcaagaacagcatcctcccctactacccggccaccgccatc 328 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 491 tccaacgtcgatacctggctcaagaacagcatcctcccctactacccggccaccatgatc 550 Query: 329 acctacatcaccgtcggcgccgagatcaccgagagcaccatcaacgtctcctccctcgtc 388 |||||||||||||||||||||||| ||||||||||| || ||||||| ||| |||||||| Sbjct: 551 acctacatcaccgtcggcgccgaggtcaccgagagccccgtcaacgtgtccgccctcgtc 610 Query: 389 gtgccggccatgcgca 404 ||||| |||||||||| Sbjct: 611 gtgcctgccatgcgca 626
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 474 bits (239), Expect = e-130 Identities = 308/331 (93%) Strand = Plus / Plus Query: 74 ggcatctgctacggccgcaacgccgacgacctgccggggcccgacaaggtggcgcagctc 133 |||||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||||| Sbjct: 30891647 ggcatctgctacggccgcaacgccgatgacctgccggcgccggacaaggtggtgcagctc 30891706 Query: 134 atccagcagcagtccatcaagtacgtgcgcatctacgacgccaacgtcgacgtcatcaag 193 |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 30891707 atccagcagcagtcgctcaagtacgtgcgcatctacgacaccaacatcgacgtcatcaag 30891766 Query: 194 gccttcgccaacaccagcgtggagctcatggtcggcgtccccaacgccgacctcctcgcc 253 ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| || Sbjct: 30891767 gccttcgccaacaccggcgtcgagctcatggtcggcgtccccaactccgacctcctcccc 30891826 Query: 254 ttctcgcagtaccagtccaacgtcgacacctggctcaagaacagcatcctcccctactac 313 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 30891827 ttcgcgcagtaccagtccaacgtcgatacctggctcaagaacagcatcctcccctactac 30891886 Query: 314 ccggccaccgccatcacctacatcaccgtcggcgccgagatcaccgagagcaccatcaac 373 ||||||||| ||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 30891887 ccggccaccatgatcacctacatcaccgtcggcgccgaggtcaccgagagccccgtcaac 30891946 Query: 374 gtctcctccctcgtcgtgccggccatgcgca 404 || ||| ||||||||||||| |||||||||| Sbjct: 30891947 gtgtccgccctcgtcgtgcctgccatgcgca 30891977 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 373 cgtctcctccctcgtcgtgccggcc 397 ||||||||||| ||||||||||||| Sbjct: 33989388 cgtctcctcccccgtcgtgccggcc 33989364
>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0638D12 Length = 161277 Score = 474 bits (239), Expect = e-130 Identities = 308/331 (93%) Strand = Plus / Plus Query: 74 ggcatctgctacggccgcaacgccgacgacctgccggggcccgacaaggtggcgcagctc 133 |||||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||||| Sbjct: 92014 ggcatctgctacggccgcaacgccgatgacctgccggcgccggacaaggtggtgcagctc 92073 Query: 134 atccagcagcagtccatcaagtacgtgcgcatctacgacgccaacgtcgacgtcatcaag 193 |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 92074 atccagcagcagtcgctcaagtacgtgcgcatctacgacaccaacatcgacgtcatcaag 92133 Query: 194 gccttcgccaacaccagcgtggagctcatggtcggcgtccccaacgccgacctcctcgcc 253 ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| || Sbjct: 92134 gccttcgccaacaccggcgtcgagctcatggtcggcgtccccaactccgacctcctcccc 92193 Query: 254 ttctcgcagtaccagtccaacgtcgacacctggctcaagaacagcatcctcccctactac 313 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 92194 ttcgcgcagtaccagtccaacgtcgatacctggctcaagaacagcatcctcccctactac 92253 Query: 314 ccggccaccgccatcacctacatcaccgtcggcgccgagatcaccgagagcaccatcaac 373 ||||||||| ||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 92254 ccggccaccatgatcacctacatcaccgtcggcgccgaggtcaccgagagccccgtcaac 92313 Query: 374 gtctcctccctcgtcgtgccggccatgcgca 404 || ||| ||||||||||||| |||||||||| Sbjct: 92314 gtgtccgccctcgtcgtgcctgccatgcgca 92344
>gb|AY110207.1| Zea mays CL23834_1 mRNA sequence Length = 960 Score = 420 bits (212), Expect = e-114 Identities = 306/336 (91%), Gaps = 1/336 (0%) Strand = Plus / Plus Query: 29 tcctcttcttgctgctcatagggcattgccacggcggcaagnaccggcatctgctacggc 88 |||||||||| ||||| | ||||| ||||||||||||||| | ||| ||||||||||| Sbjct: 61 tcctcttcttattgctcgtcgggcaatgccacggcggcaag-attggcgtctgctacggc 119 Query: 89 cgcaacgccgacgacctgccggggcccgacaaggtggcgcagctcatccagcagcagtcc 148 ||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||||||| Sbjct: 120 cgcaacgccgacgaccttccggcgccagacaaggtggcgcagctaatccagcagcagtcc 179 Query: 149 atcaagtacgtgcgcatctacgacgccaacgtcgacgtcatcaaggccttcgccaacacc 208 |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| Sbjct: 180 atcaagtacgtgcgcatctacgacaccaacatcgacgtcatcaaggcattcgccaacacc 239 Query: 209 agcgtggagctcatggtcggcgtccccaacgccgacctcctcgccttctcgcagtaccag 268 |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 240 ggcgtcgagctcatggtcggcgtccccaactccgacctcctcgccttcgcgcagtaccag 299 Query: 269 tccaacgtcgacacctggctcaagaacagcatcctcccctactacccggccaccgccatc 328 |||||||||||||| ||||||||||||||||||||||| |||||||||| ||| | Sbjct: 300 tccaacgtcgacacatggctcaagaacagcatcctcccatactacccggacacaatgggc 359 Query: 329 acctacatcaccgtcggcgccgagatcaccgagagc 364 |||||||||||||||||||||||| ||||||||||| Sbjct: 360 acctacatcaccgtcggcgccgaggtcaccgagagc 395
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 232 bits (117), Expect = 7e-58 Identities = 156/169 (92%) Strand = Plus / Plus Query: 88 ccgcaacgccgacgacctgccggggcccgacaaggtggcgcagctcatccagcagcagtc 147 |||||||||||| |||||||||| ||| |||||||||| ||||||||||||||||||||| Sbjct: 15552481 ccgcaacgccgatgacctgccggcgccggacaaggtggtgcagctcatccagcagcagtc 15552540 Query: 148 catcaagtacgtgcgcatctacgacgccaacgtcgacgtcatcaaggccttcgccaacac 207 ||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 15552541 gctcaagtacgcgcgcatctacgacaccaacatcgacgtcatcaaggccttcgccaacac 15552600 Query: 208 cagcgtggagctcatggtcggcgtccccaacgccgacctcctcgccttc 256 | |||| |||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 15552601 cggcgtcgagctcatggtcggcgtccccaactccgacctcctccccttc 15552649
>dbj|AP005068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0644G05 Length = 143119 Score = 232 bits (117), Expect = 7e-58 Identities = 156/169 (92%) Strand = Plus / Plus Query: 88 ccgcaacgccgacgacctgccggggcccgacaaggtggcgcagctcatccagcagcagtc 147 |||||||||||| |||||||||| ||| |||||||||| ||||||||||||||||||||| Sbjct: 80041 ccgcaacgccgatgacctgccggcgccggacaaggtggtgcagctcatccagcagcagtc 80100 Query: 148 catcaagtacgtgcgcatctacgacgccaacgtcgacgtcatcaaggccttcgccaacac 207 ||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 80101 gctcaagtacgcgcgcatctacgacaccaacatcgacgtcatcaaggccttcgccaacac 80160 Query: 208 cagcgtggagctcatggtcggcgtccccaacgccgacctcctcgccttc 256 | |||| |||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 80161 cggcgtcgagctcatggtcggcgtccccaactccgacctcctccccttc 80209
>dbj|AB052291.1| Pyrus pyrifolia bgn-1 mRNA for endo-1,3-beta-glucanase-like protein, complete cds Length = 1408 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 181 cgacgtcatcaaggccttcgccaacacca 209 |||| |||||||||||||||||||||||| Sbjct: 227 cgacatcatcaaggccttcgccaacacca 255
>ref|NM_194967.1| Oryza sativa (japonica cultivar-group) putative beta-1,3-glucanase (OSJNBa0050E08.13), mRNA Length = 1257 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 197 ttcgccaacaccagcgtggagctcatggtcggcgtccc 234 |||||||||||| | ||||||||| | ||||||||||| Sbjct: 199 ttcgccaacaccggggtggagctcgtcgtcggcgtccc 236
>gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050E08, complete sequence Length = 180499 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 197 ttcgccaacaccagcgtggagctcatggtcggcgtccc 234 |||||||||||| | ||||||||| | ||||||||||| Sbjct: 112153 ttcgccaacaccggggtggagctcgtcgtcggcgtccc 112116
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 197 ttcgccaacaccagcgtggagctcatggtcggcgtccc 234 |||||||||||| | ||||||||| | ||||||||||| Sbjct: 3830357 ttcgccaacaccggggtggagctcgtcgtcggcgtccc 3830320
>dbj|AK120028.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C12, full insert sequence Length = 1625 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 197 ttcgccaacaccagcgtggagctcatggtcggcgtccc 234 |||||||||||| | ||||||||| | ||||||||||| Sbjct: 255 ttcgccaacaccggggtggagctcgtcgtcggcgtccc 292
>dbj|AK073394.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044A03, full insert sequence Length = 1707 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 197 ttcgccaacaccagcgtggagctcatggtcggcgtccc 234 |||||||||||| | ||||||||| | ||||||||||| Sbjct: 300 ttcgccaacaccggggtggagctcgtcgtcggcgtccc 337
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 197 ttcgccaacaccagcgtggagctcatggtcggcgtccc 234 |||||||||||| | ||||||||| | ||||||||||| Sbjct: 3830278 ttcgccaacaccggggtggagctcgtcgtcggcgtccc 3830241
>ref|XM_450415.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1845 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 219 tcatggtcggcgtccccaacgccga 243 |||||||||||||| |||||||||| Sbjct: 384 tcatggtcggcgtcaccaacgccga 408
>ref|XM_478344.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2037 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 224 gtcggcgtccccaacgccgacctcctcgc 252 |||||||||||||||| ||| |||||||| Sbjct: 294 gtcggcgtccccaacgacgagctcctcgc 322
>ref|XM_478343.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1743 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 224 gtcggcgtccccaacgccgacctcctcgc 252 |||||||||||||||| ||| |||||||| Sbjct: 313 gtcggcgtccccaacgacgagctcctcgc 341
>ref|XM_506361.1| PREDICTED Oryza sativa (japonica cultivar-group), P0409B11.17-1 mRNA Length = 1804 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 224 gtcggcgtccccaacgccgacctcctcgc 252 |||||||||||||||| ||| |||||||| Sbjct: 342 gtcggcgtccccaacgacgagctcctcgc 370
>gb|AC084162.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-11P12, complete sequence Length = 159180 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 ggccaccgccatcacctacat 336 ||||||||||||||||||||| Sbjct: 44986 ggccaccgccatcacctacat 45006
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 219 tcatggtcggcgtccccaacgccga 243 |||||||||||||| |||||||||| Sbjct: 5377088 tcatggtcggcgtcaccaacgccga 5377112
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 224 gtcggcgtccccaacgccgacctcctcgc 252 |||||||||||||||| ||| |||||||| Sbjct: 19384007 gtcggcgtccccaacgacgagctcctcgc 19384035
>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0409B11 Length = 168354 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 224 gtcggcgtccccaacgccgacctcctcgc 252 |||||||||||||||| ||| |||||||| Sbjct: 73545 gtcggcgtccccaacgacgagctcctcgc 73573
>dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0003D09 Length = 161970 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 373 cgtctcctccctcgtcgtgccggcc 397 ||||||||||| ||||||||||||| Sbjct: 120831 cgtctcctcccccgtcgtgccggcc 120807
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 343 cggcgccgagatcaccgagagcacc 367 |||||||||| |||||||||||||| Sbjct: 556962 cggcgccgagctcaccgagagcacc 556986
>dbj|AP005788.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0515A04 Length = 146160 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 219 tcatggtcggcgtccccaacgccga 243 |||||||||||||| |||||||||| Sbjct: 60064 tcatggtcggcgtcaccaacgccga 60088
>dbj|AK102527.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033096C05, full insert sequence Length = 1845 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 219 tcatggtcggcgtccccaacgccga 243 |||||||||||||| |||||||||| Sbjct: 384 tcatggtcggcgtcaccaacgccga 408
>dbj|AK101250.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032E23, full insert sequence Length = 1742 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 224 gtcggcgtccccaacgccgacctcctcgc 252 |||||||||||||||| ||| |||||||| Sbjct: 312 gtcggcgtccccaacgacgagctcctcgc 340
>dbj|AK069383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013E15, full insert sequence Length = 2037 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 224 gtcggcgtccccaacgccgacctcctcgc 252 |||||||||||||||| ||| |||||||| Sbjct: 294 gtcggcgtccccaacgacgagctcctcgc 322
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 159 tgcgcatctacgacgccaacgtcga 183 ||||||||| ||||||||||||||| Sbjct: 3727888 tgcgcatcttcgacgccaacgtcga 3727912
>dbj|AK063956.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G01, full insert sequence Length = 1804 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 224 gtcggcgtccccaacgccgacctcctcgc 252 |||||||||||||||| ||| |||||||| Sbjct: 342 gtcggcgtccccaacgacgagctcctcgc 370
>ref|NM_128325.2| Arabidopsis thaliana unknown protein AT2G27660 mRNA, complete cds Length = 2314 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 accatcaacgtctcctccctcgtc 388 ||||||||||||| |||||||||| Sbjct: 978 accatcaacgtcttctccctcgtc 955
>ref|XM_479840.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2262 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gcggcgttctccgcgttcctcttc 36 |||||||||| ||||||||||||| Sbjct: 348 gcggcgttcttcgcgttcctcttc 371
>ref|XM_470189.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 960 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 tccccaacgccgacctcctcgcct 254 ||||||||||||||| |||||||| Sbjct: 683 tccccaacgccgaccgcctcgcct 706
>ref|XM_469381.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2016 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 ccaacgccgacctcctcgcc 253 |||||||||||||||||||| Sbjct: 506 ccaacgccgacctcctcgcc 525
>gb|AE017128.1| Yersinia pestis biovar Medievalis str. 91001 section 2 of 16 of the complete genome Length = 290803 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ttcctcttcttgctgctcat 47 |||||||||||||||||||| Sbjct: 50163 ttcctcttcttgctgctcat 50144
>gb|AE017130.1| Yersinia pestis biovar Medievalis str. 91001 section 4 of 16 of the complete genome Length = 290510 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 gctcatccagcagcagtccatcaa 153 ||||||||||||||||| |||||| Sbjct: 72834 gctcatccagcagcagtgcatcaa 72857
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 catcaaggccttcgccaaca 206 |||||||||||||||||||| Sbjct: 3595751 catcaaggccttcgccaaca 3595770
>gb|AY533122.1| Oryza sativa (japonica cultivar-group) glutathione S-transferase GSTF14 mRNA, partial cds Length = 825 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 tccccaacgccgacctcctcgcct 254 ||||||||||||||| |||||||| Sbjct: 683 tccccaacgccgaccgcctcgcct 706
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 gctcatccagcagcagtccatcaa 153 ||||||||||||||||| |||||| Sbjct: 3227814 gctcatccagcagcagtgcatcaa 3227837 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ttcctcttcttgctgctcat 47 |||||||||||||||||||| Sbjct: 927487 ttcctcttcttgctgctcat 927468
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 tcatggtcggcgtccccaac 238 |||||||||||||||||||| Sbjct: 604072 tcatggtcggcgtccccaac 604091
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 ccaacgccgacctcctcgcc 253 |||||||||||||||||||| Sbjct: 27664886 ccaacgccgacctcctcgcc 27664905 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 231 tccccaacgccgacctcctcgcct 254 ||||||||||||||| |||||||| Sbjct: 1919214 tccccaacgccgaccgcctcgcct 1919191
>ref|XM_842708.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0778) partial mRNA Length = 4155 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 tcatggtcggcgtccccaac 238 |||||||||||||||||||| Sbjct: 1265 tcatggtcggcgtccccaac 1284
>ref|XM_743296.1| Aspergillus fumigatus Af293 copper amine oxidase (Afu3g00680) partial mRNA Length = 1998 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 cgccaacaccagcgtggagc 218 |||||||||||||||||||| Sbjct: 1488 cgccaacaccagcgtggagc 1507
>gb|AY859128.1| Pseudomonas viridiflava strain KY1.1a AvrE (avrE) gene, complete cds Length = 5305 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cgtcatcaaggccttcgcca 203 |||||||||||||||||||| Sbjct: 2065 cgtcatcaaggccttcgcca 2084
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 tgcggcggcgttctccgcgttcct 32 |||||||||| ||||||||||||| Sbjct: 1203188 tgcggcggcgctctccgcgttcct 1203165
>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06, complete sequence Length = 122218 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 tccccaacgccgacctcctcgcct 254 ||||||||||||||| |||||||| Sbjct: 56197 tccccaacgccgaccgcctcgcct 56220
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ttcctcttcttgctgctcat 47 |||||||||||||||||||| Sbjct: 924974 ttcctcttcttgctgctcat 924955
>emb|AJ414156.1| Yersinia pestis strain CO92 complete genome; segment 16/20 Length = 220050 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ttcctcttcttgctgctcat 47 |||||||||||||||||||| Sbjct: 171065 ttcctcttcttgctgctcat 171084
>emb|AJ414147.1| Yersinia pestis strain CO92 complete genome; segment 7/20 Length = 199050 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 gctcatccagcagcagtccatcaa 153 ||||||||||||||||| |||||| Sbjct: 90893 gctcatccagcagcagtgcatcaa 90870
>gb|AC005824.3| Arabidopsis thaliana chromosome 2 clone F15K20 map B68, complete sequence Length = 118196 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 accatcaacgtctcctccctcgtc 388 ||||||||||||| |||||||||| Sbjct: 79804 accatcaacgtcttctccctcgtc 79781
>gb|AC163352.2| Mus musculus BAC clone RP23-98P11 from chromosome 16, complete sequence Length = 190996 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 283 ctggctcaagaacagcatcctccc 306 |||||| ||||||||||||||||| Sbjct: 101238 ctggctgaagaacagcatcctccc 101261
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 gcggcgttctccgcgttcctcttc 36 |||||||||| ||||||||||||| Sbjct: 1193401 gcggcgttcttcgcgttcctcttc 1193378
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 ccaacgccgacctcctcgcc 253 |||||||||||||||||||| Sbjct: 27756209 ccaacgccgacctcctcgcc 27756228 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 231 tccccaacgccgacctcctcgcct 254 ||||||||||||||| |||||||| Sbjct: 1919212 tccccaacgccgaccgcctcgcct 1919189
>gb|AE004509.1| Pseudomonas aeruginosa PAO1, section 70 of 529 of the complete genome Length = 11717 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccggcatctgctacggccgcaacg 95 |||||||| ||||||||||||||| Sbjct: 9556 ccggcatccgctacggccgcaacg 9533
>gb|AC123974.6| Oryza sativa chromosome 3 BAC OSJNBb0021P10 genomic sequence, complete sequence Length = 136982 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 ccaacgccgacctcctcgcc 253 |||||||||||||||||||| Sbjct: 106583 ccaacgccgacctcctcgcc 106602
>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1203H11 Length = 156561 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 gcggcgttctccgcgttcctcttc 36 |||||||||| ||||||||||||| Sbjct: 106638 gcggcgttcttcgcgttcctcttc 106615
>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073J19 Length = 165174 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 gcggcgttctccgcgttcctcttc 36 |||||||||| ||||||||||||| Sbjct: 22708 gcggcgttcttcgcgttcctcttc 22685
>dbj|AP006617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091F23 Length = 147699 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 gcggcgttctccgcgttcctcttc 36 |||||||||| ||||||||||||| Sbjct: 60480 gcggcgttcttcgcgttcctcttc 60457
>dbj|AK102889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112M16, full insert sequence Length = 1300 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 tccccaacgccgacctcctcgcct 254 ||||||||||||||| |||||||| Sbjct: 775 tccccaacgccgaccgcctcgcct 798
>dbj|AK101512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046D19, full insert sequence Length = 2260 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gcggcgttctccgcgttcctcttc 36 |||||||||| ||||||||||||| Sbjct: 348 gcggcgttcttcgcgttcctcttc 371
>gb|AC141482.4| Mus musculus BAC clone RP23-159C3 from 16, complete sequence Length = 180832 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 283 ctggctcaagaacagcatcctccc 306 |||||| ||||||||||||||||| Sbjct: 14727 ctggctgaagaacagcatcctccc 14750 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,495,546 Number of Sequences: 3902068 Number of extensions: 2495546 Number of successful extensions: 55602 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54605 Number of HSP's gapped (non-prelim): 994 length of query: 405 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 383 effective length of database: 17,147,199,772 effective search space: 6567377512676 effective search space used: 6567377512676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
