ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9e21 |
|---|---|
| Clone Library Name | barley_pub |
>SKP1B_ARATH (Q9FHW7) SKP1-like protein 1B (SKP1-like 2) (UFO-binding protein 2)| Length = 171 Score = 82.0 bits (201), Expect = 7e-16 Identities = 50/112 (44%), Positives = 62/112 (55%), Gaps = 24/112 (21%) Frame = +3 Query: 75 SVRGDTLSKVMDYSRTH----------------------ASGS--HDLSDWDADFIAGFN 182 +V LSKV++Y + H ASGS DL WD++FI + Sbjct: 47 NVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIK-VD 105 Query: 183 HEALFDLILASEYLQIRGLIDLACQTVASKIKGKSPREICNIFNIKSVFAPE 338 LFDLILA+ YL I+GL+DL CQTVA IKGK+P EI FNIK+ F PE Sbjct: 106 QGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPE 157
>SKP1A_ARATH (Q39255) SKP1-like protein 1A (SKP1-like 1) (UFO-binding protein 1)| Length = 160 Score = 81.6 bits (200), Expect = 9e-16 Identities = 45/102 (44%), Positives = 59/102 (57%), Gaps = 14/102 (13%) Frame = +3 Query: 75 SVRGDTLSKVMDYSRTH--------------ASGSHDLSDWDADFIAGFNHEALFDLILA 212 +V L+KV++Y + H A+ DL WDADF+ + LF+LILA Sbjct: 46 NVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMK-IDQATLFELILA 104 Query: 213 SEYLQIRGLIDLACQTVASKIKGKSPREICNIFNIKSVFAPE 338 + YL I+ L+DL CQTVA IKGK+P EI FNIK+ F PE Sbjct: 105 ANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPE 146
>FP21_DICDI (P52285) Glycoprotein FP21 precursor| Length = 162 Score = 70.9 bits (172), Expect = 2e-12 Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 13/101 (12%) Frame = +3 Query: 75 SVRGDTLSKVMDYSRTHASGSH-------------DLSDWDADFIAGFNHEALFDLILAS 215 +V L KV+DY R H D+ +D DF + LF+LILA+ Sbjct: 45 NVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCK-VDQPTLFELILAA 103 Query: 216 EYLQIRGLIDLACQTVASKIKGKSPREICNIFNIKSVFAPE 338 YL I+ L+D+ C+TVA+ I+GK+P EI IFNIK+ F PE Sbjct: 104 NYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPE 144
>SKP1_XENLA (Q71U00) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) Length = 162 Score = 68.2 bits (165), Expect = 1e-11 Identities = 33/66 (50%), Positives = 46/66 (69%) Frame = +3 Query: 141 DLSDWDADFIAGFNHEALFDLILASEYLQIRGLIDLACQTVASKIKGKSPREICNIFNIK 320 D+ WD +F+ + LF+LILA+ YL I+GL+D+ C+TVA+ IKGK+P EI FNIK Sbjct: 83 DIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIK 141 Query: 321 SVFAPE 338 + F E Sbjct: 142 NDFTEE 147
>SKP1_RAT (Q6PEC4) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) Length = 162 Score = 68.2 bits (165), Expect = 1e-11 Identities = 33/66 (50%), Positives = 46/66 (69%) Frame = +3 Query: 141 DLSDWDADFIAGFNHEALFDLILASEYLQIRGLIDLACQTVASKIKGKSPREICNIFNIK 320 D+ WD +F+ + LF+LILA+ YL I+GL+D+ C+TVA+ IKGK+P EI FNIK Sbjct: 83 DIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIK 141 Query: 321 SVFAPE 338 + F E Sbjct: 142 NDFTEE 147
>SKP1_MOUSE (Q9WTX5) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) Length = 162 Score = 68.2 bits (165), Expect = 1e-11 Identities = 33/66 (50%), Positives = 46/66 (69%) Frame = +3 Query: 141 DLSDWDADFIAGFNHEALFDLILASEYLQIRGLIDLACQTVASKIKGKSPREICNIFNIK 320 D+ WD +F+ + LF+LILA+ YL I+GL+D+ C+TVA+ IKGK+P EI FNIK Sbjct: 83 DIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIK 141 Query: 321 SVFAPE 338 + F E Sbjct: 142 NDFTEE 147
>SKP1_HUMAN (P63208) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) (RNA polymerase II elongation factor-like protein) (Organ of Corti protein 2) (OCP-II protein) (OCP-2) (Transcription elongation factor B) (S Length = 162 Score = 68.2 bits (165), Expect = 1e-11 Identities = 33/66 (50%), Positives = 46/66 (69%) Frame = +3 Query: 141 DLSDWDADFIAGFNHEALFDLILASEYLQIRGLIDLACQTVASKIKGKSPREICNIFNIK 320 D+ WD +F+ + LF+LILA+ YL I+GL+D+ C+TVA+ IKGK+P EI FNIK Sbjct: 83 DIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIK 141 Query: 321 SVFAPE 338 + F E Sbjct: 142 NDFTEE 147
>SKP1_CAVPO (P63209) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) (Organ of Corti protein 2) (OCP-II protein) (OCP-2) Length = 162 Score = 68.2 bits (165), Expect = 1e-11 Identities = 33/66 (50%), Positives = 46/66 (69%) Frame = +3 Query: 141 DLSDWDADFIAGFNHEALFDLILASEYLQIRGLIDLACQTVASKIKGKSPREICNIFNIK 320 D+ WD +F+ + LF+LILA+ YL I+GL+D+ C+TVA+ IKGK+P EI FNIK Sbjct: 83 DIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIK 141 Query: 321 SVFAPE 338 + F E Sbjct: 142 NDFTEE 147
>SKP1_YEAST (P52286) Suppressor of kinetochore protein 1 (Centromere| DNA-binding protein complex CBF3 subunit D) (E3 ubiquitin ligase complex SCF subunit SKP1) Length = 193 Score = 65.1 bits (157), Expect = 9e-11 Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 12/100 (12%) Frame = +3 Query: 75 SVRGDTLSKVMDYSRTHASG------------SHDLSDWDADFIAGFNHEALFDLILASE 218 +VR L KV++++ H S + WD +F+ + E L+++ILA+ Sbjct: 80 NVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLK-VDQEMLYEIILAAN 138 Query: 219 YLQIRGLIDLACQTVASKIKGKSPREICNIFNIKSVFAPE 338 YL I+ L+D C+ VA I+G+SP EI FNI + F PE Sbjct: 139 YLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPE 178
>ILVC2_SULSO (Q97YJ9) Putative ketol-acid reductoisomerase 2 (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase 2) (Alpha-keto-beta-hydroxylacil reductoisomerase 2) Length = 333 Score = 32.3 bits (72), Expect = 0.63 Identities = 24/75 (32%), Positives = 34/75 (45%) Frame = +3 Query: 66 IRLSVRGDTLSKVMDYSRTHASGSHDLSDWDADFIAGFNHEALFDLILASEYLQIRGLID 245 + L V+ D K DY++ A G + A I+ F EAL DL+ ++ I Sbjct: 148 VLLGVKQDASGKAWDYAKAIAKGIGAIPGGIA-VISSFEEEALLDLMSEHTWVPILFGAI 206 Query: 246 LACQTVASKIKGKSP 290 AC +A K G SP Sbjct: 207 KACYDIAVKEYGVSP 221
>SYR_STRCO (Q9WX29) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 586 Score = 29.6 bits (65), Expect = 4.1 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = +3 Query: 66 IRLSVRGDTLSKVMDYSRTHASGSHDLSDWDADF 167 +R +V GD L ++D++ G H + DW F Sbjct: 138 LRSAVIGDALRSMLDFTGEKTIGRHHIGDWGTQF 171
>TNAP1_HUMAN (Q13829) Tumor necrosis factor, alpha-induced protein 1,| endothelial (B12 protein) Length = 316 Score = 29.3 bits (64), Expect = 5.3 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 18/113 (15%) Frame = +3 Query: 42 GGEIRYCLIRLSVRGDTLSKVMDYSRTHASGSHDLSDW------------------DADF 167 GG + Y +R R DT+ K M R D W D Sbjct: 35 GGSLYYTTVRALTRHDTMLKAMFSGRMEV--LTDKEGWILIDRCGKHFGTILNYLRDDTI 92 Query: 168 IAGFNHEALFDLILASEYLQIRGLIDLACQTVASKIKGKSPREICNIFNIKSV 326 N + + +L+ ++Y I+GL+++ CQ+ A + K S + +CNI I S+ Sbjct: 93 TLPQNRQEIKELMAEAKYYLIQGLVNM-CQS-ALQDKKDSYQPVCNIPIITSL 143
>PFPA_RICCO (Q41140) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 617 Score = 28.9 bits (63), Expect = 6.9 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%) Frame = +3 Query: 288 PREICNIFNIKSVFAPE----LDGDTIAKRLQDSTTCSSD 395 PRE+ ++ ++S++ PE L G T+ L D TT S+ Sbjct: 8 PRELSDLQKLRSLYKPELPPCLQGTTVRVELGDGTTACSE 47
>ARP_ARATH (P45951) Apurinic endonuclease-redox protein (DNA-(apurinic or| apyrimidinic site) lyase) (EC 4.2.99.18) Length = 536 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -3 Query: 302 TNFAWRFSLYLTSNSLAG*VNQSSYLKIFRSQDEIEEGLVVE 177 TN WR +L S S+A V+ S L D GL+++ Sbjct: 494 TNKGWRLDYFLVSQSIAANVHDSYILPDINGSDHCPIGLILK 535 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,069,723 Number of Sequences: 219361 Number of extensions: 1101832 Number of successful extensions: 3452 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3377 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3450 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
