>gb|AF494084.1| Nicotiana benthamiana SKP1 mRNA, complete cds
          Length = 462

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 190 ccctcttcgatctcatcctggct 212
           |||||||||||||||||||||||
Sbjct: 269 ccctcttcgatctcatcctggct 291

>gb|AC149642.2| Medicago truncatula chromosome 2 BAC clone mth2-62p11, complete
             sequence
          Length = 95165

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 302   taatatctttaacataaaaagtg 324
             |||||||||||||||||||||||
Sbjct: 85015 taatatctttaacataaaaagtg 84993

>gb|AF070967.1|AF070967 Nicotiana clevelandii SKP1-like protein mRNA, complete cds
          Length = 769

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 190 ccctcttcgatctcatcctggct 212
           |||||||||||||||||||||||
Sbjct: 305 ccctcttcgatctcatcctggct 327

>gb|AC149694.2| Bos taurus  BAC CH240-423C21 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 186118

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 394   acaaggagctgccatgcagtga 415
             ||||||||||||||||||||||
Sbjct: 63058 acaaggagctgccatgcagtga 63037

>gb|AC135452.2| Homo sapiens 3 BAC RP11-507A10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 137095

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 446   ggaggaaaaggctttgcaggct 467
             ||||||||||||||||||||||
Sbjct: 28753 ggaggaaaaggctttgcaggct 28774

>emb|AL138956.17| Human DNA sequence from clone RP11-16D22 on chromosome 13 Contains the 5'
              end of a novel gene, complete sequence
          Length = 165257

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 413    tgaaaccccatgtttaatgca 433
              |||||||||||||||||||||
Sbjct: 113007 tgaaaccccatgtttaatgca 113027

>gb|AF440505.1| Caenorhabditis elegans SKR-1 (skr-1) mRNA, partial cds
          Length = 788

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 250 cctgccagactgttgctagtaagataaagggaaaatctcca 290
           ||||| ||||||||||||  | ||| |||||||||||||||
Sbjct: 381 cctgcaagactgttgctaacatgatcaagggaaaatctcca 421

>gb|AC084197.1| Caenorhabditis elegans cosmid Y73B6BL, complete sequence
          Length = 216143

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 293    cgaaatttgtaatatctttaa 313
              |||||||||||||||||||||
Sbjct: 199942 cgaaatttgtaatatctttaa 199922

>ref|NM_060112.3| Caenorhabditis elegans SKp1 Related (ubiquitin ligase complex
           component) family member (skr-1) (skr-1) mRNA, complete
           cds
          Length = 869

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 250 cctgccagactgttgctagtaagataaagggaaaatctcca 290
           ||||| ||||||||||||  | ||| |||||||||||||||
Sbjct: 417 cctgcaagactgttgctaacatgatcaagggaaaatctcca 457

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 190      ccctcttcgatctcatcctgg 210
                |||||||||||||||||||||
Sbjct: 20944028 ccctcttcgatctcatcctgg 20944008

>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1274F11
          Length = 171257

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 190   ccctcttcgatctcatcctgg 210
             |||||||||||||||||||||
Sbjct: 36117 ccctcttcgatctcatcctgg 36097

>emb|Z81072.1|CEF30A10 Caenorhabditis elegans Cosmid F30A10, complete sequence
          Length = 37170

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 250 cctgccagactgttgctagtaagataaagggaaaatctcca 290
           ||||| ||||||||||||  | ||| |||||||||||||||
Sbjct: 311 cctgcaagactgttgctaacatgatcaagggaaaatctcca 351

>gb|AY496099.1| Capsicum annuum fimbriata-associated protein-like mRNA, complete
           sequence
          Length = 318

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 ctcttcgatctcatcctggc 211
           ||||||||||||||||||||
Sbjct: 127 ctcttcgatctcatcctggc 146

>emb|AL451075.15| Human DNA sequence from clone RP11-215I23 on chromosome 1 Contains
            the 3' end of the SOAT1 gene for sterol O-acyltransferase
            (acyl-Coenzyme A: cholesterol acyltransferase) 1, the 5'
            end of a novel gene, a MADS box transcription enhancer
            factor 2 polypeptide A (myocyte enhancer factor 2A)
            (MEF2A) pseudogene and a heterogeneous nuclear
            ribonucleoprotein A1 (HNRPA1) pseudogene, complete
            sequence
          Length = 153937

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 406  catgcagtgaaaccccatgt 425
            ||||||||||||||||||||
Sbjct: 8292 catgcagtgaaaccccatgt 8273

>gb|AC130313.3| Homo sapiens chromosome 8, clone RP11-460A11, complete sequence
          Length = 148476

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    aatatcttcaaataagagga 236
              ||||||||||||||||||||
Sbjct: 124053 aatatcttcaaataagagga 124072

>gb|AC091053.11| Homo sapiens chromosome 11, clone RP11-152H18, complete sequence
          Length = 160740

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    aaggctttgcaggctcttga 472
              ||||||||||||||||||||
Sbjct: 120855 aaggctttgcaggctcttga 120874

>emb|AL133342.14| Human DNA sequence from clone RP5-906C1 on chromosome 20 Contains the
             5' end of the gene for P-Rex1 protein (KIAA1415, PREX1)
             and a CpG Island, complete sequence
          Length = 110814

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 411   agtgaaaccccatgtttaat 430
             ||||||||||||||||||||
Sbjct: 32428 agtgaaaccccatgtttaat 32409

>emb|AJ003134.1|CSAJ3134 Citrus sinensis mRNA for protein similar to fimbriata-associated
           protein, partial cds
          Length = 557

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 ctcttcgatctcatcctggc 211
           ||||||||||||||||||||
Sbjct: 127 ctcttcgatctcatcctggc 146

>emb|AJ400879.1|HSA400879 Homo sapiens ST5 gene for suppression of tumorigenicity 5, L27a gene for
              ribosomal protein L27a and KIAA0298 gene
          Length = 275434

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    aaggctttgcaggctcttga 472
              ||||||||||||||||||||
Sbjct: 183157 aaggctttgcaggctcttga 183176

>gb|AC015807.5| Homo sapiens chromosome 8, clone RP11-89M16, complete sequence
          Length = 151348

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   aatatcttcaaataagagga 236
             ||||||||||||||||||||
Sbjct: 21643 aatatcttcaaataagagga 21662

>gb|AC155990.2| Xenopus tropicalis clone ISB1-282D1, complete sequence
          Length = 95725

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   aagtgtctttgctccagaat 339
             ||||||||||||||||||||
Sbjct: 47450 aagtgtctttgctccagaat 47469

>gb|AC152932.2| Xenopus tropicalis clone ISB1-31M3, complete sequence
          Length = 78419

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   aagtgtctttgctccagaat 339
             ||||||||||||||||||||
Sbjct: 78395 aagtgtctttgctccagaat 78414

>gb|AC150254.5| Aedes aegypti, clone XX-88A20, complete sequence
          Length = 116482

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   taatatctttaacataaaaa 321
             ||||||||||||||||||||
Sbjct: 19209 taatatctttaacataaaaa 19228

>gb|AC011198.2|AC011198 Homo sapiens chromosome 8 clone RP11-18K20, complete sequence
          Length = 191233

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   aatatcttcaaataagagga 236
             ||||||||||||||||||||
Sbjct: 46582 aatatcttcaaataagagga 46563

>gb|AC104360.8| Homo sapiens chromosome 11, clone RP11-691A5, complete sequence
          Length = 170211

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   aaggctttgcaggctcttga 472
             ||||||||||||||||||||
Sbjct: 50847 aaggctttgcaggctcttga 50866

>ref|XM_312446.2| Anopheles gambiae str. PEST ENSANGP00000003034
           (ENSANGG00000002485), partial mRNA
          Length = 3963

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 76  ccgtccgaggcgacacactc 95
           ||||||||||||||||||||
Sbjct: 601 ccgtccgaggcgacacactc 620

>gb|DQ012240.1| Aulonocranus dewindti recombinase activating protein 1 (rag1) gene,
            exon 3 and partial cds
          Length = 1113

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 191  cctcttcgatctcatcctgg 210
            ||||||||||||||||||||
Sbjct: 1087 cctcttcgatctcatcctgg 1068

>dbj|AB017192.1| Clostridium perfringens nitrate reductase gene cluster, partial and
            complete cds
          Length = 14393

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 442  aatgggaggaaaaggctttg 461
            ||||||||||||||||||||
Sbjct: 7812 aatgggaggaaaaggctttg 7831


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,762,559
Number of Sequences: 3902068
Number of extensions: 3762559
Number of successful extensions: 83781
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83717
Number of HSP's gapped (non-prelim): 64
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)