ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8p12 |
|---|---|
| Clone Library Name | barley_pub |
>YDQ4_SCHPO (O14197) Hypothetical protein C5D6.04 in chromosome I| Length = 452 Score = 52.4 bits (124), Expect = 1e-06 Identities = 34/154 (22%), Positives = 70/154 (45%), Gaps = 6/154 (3%) Frame = +3 Query: 21 GFLMATKYVNILQPNGRKLLNGLVFSLLLPCLIFSQLGSAITLEKLVQWWYIPVNIVVGA 200 G+++A K L + +K+++ L PCL+F ++G+ + L+ L+ +PV V+ + Sbjct: 33 GYVLAKK--GFLPRDAQKVISSLNVYFFTPCLVFEKVGNGLNLKMLIDLSLLPVFYVIIS 90 Query: 201 VSGSLIGFVVASIIRPPYPYFKFTVXXXXXXXXXXXPLVLIAALCRDPSN------PFGD 362 + LI F++A + R F PL L+++L + P Sbjct: 91 AASILISFLLAKLFRLTPRQRNFATACITFQNSNSLPLALVSSLATTVKDLLWDKIPDDT 150 Query: 363 SEKCSQDGNAYISFGQWVGAIIVYTYVFKMLSPP 464 +K + G Y+ +G + ++Y +++L P Sbjct: 151 PDKVASRGIMYLLIFSQLGQALRWSYGYRILLSP 184
>YB8B_YEAST (P38355) Protein YBR287W| Length = 427 Score = 40.0 bits (92), Expect = 0.006 Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 6/161 (3%) Frame = +3 Query: 9 VCFMGFLMATKYVNILQPNGRKLLNGLVFSLLLPCLIFSQLGSAITLEKLVQWWYIPVNI 188 + GF A+ +L +K+++ L L PCLIFS+L ++++ K+ + IP+ Sbjct: 24 IALAGFWSASS--GLLPKQSQKIISLLNVDLFTPCLIFSKLAKSLSMAKIFEIAIIPIFF 81 Query: 189 VVGAVSGSLIGFVVASIIRPPYPYFKFTVXXXXXXXXXXXPLVLIAALCRDPSN------ 350 + + G +++ I+ F V P+ L +L N Sbjct: 82 GLTTGISFISGKIMSRILDLDKDETNFVVANSVFGNSNSLPVSLTLSLAYTLPNLTWDQI 141 Query: 351 PFGDSEKCSQDGNAYISFGQWVGAIIVYTYVFKMLSPPPGE 473 P + + + G Y+ Q +G ++ +++ + L GE Sbjct: 142 PNDNRDNVASRGILYLLIFQQIGQMLRWSWGYNKLMKWSGE 182
>UDA1_RAT (P36510) UDP-glucuronosyltransferase 2A1 precursor (EC 2.4.1.17)| (UDPGT) (UGT-OLF) Length = 527 Score = 35.4 bits (80), Expect = 0.14 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 4/96 (4%) Frame = -2 Query: 383 ILAAFFRVPKRIGWVPT*CCNENQRYISNVPYSNVDNSKLEVWIRRSDDRRHHKA----N 216 I +A ++P+++ W RY +P + N++L WI ++D H K Sbjct: 322 IASALAQIPQKVLW----------RYKGKIPATLGSNTRLFDWIPQNDLLGHPKTRAFIT 371 Query: 215 QGSRHGTYNNIYWNIPPLHQLLESDRAAQLGKYKAR 108 G +G Y IY IP + + +D+ + KA+ Sbjct: 372 HGGTNGIYEAIYHGIPMVGVPMFADQPDNIAHMKAK 407
>UDC1_RABIT (P36514) UDP-glucuronosyltransferase 2C1 (EC 2.4.1.17) (UDPGT)| (Fragment) Length = 502 Score = 35.0 bits (79), Expect = 0.19 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Frame = -2 Query: 383 ILAAFFRVPKRIGWVPT*CCNENQRYISNVPYSNVDNSKLEVWIRRSDDRRHHKA----N 216 I +A ++P+++ W RY P + N++L WI ++D H K Sbjct: 297 IASALAQIPQKVLW----------RYTGKKPATLGPNTRLFEWIPQNDLLGHPKTRAFIT 346 Query: 215 QGSRHGTYNNIYWNIPPLHQLLESDRAAQLGKYKAR 108 G +G Y IY +P + L D+ + + KA+ Sbjct: 347 HGGTNGLYEAIYHGVPMVGIPLFGDQPDNIARVKAK 382
>UDB7_HUMAN (P16662) UDP-glucuronosyltransferase 2B7 precursor (EC 2.4.1.17)| (UDPGT) (3,4-catechol estrogen specific) (UDPGTh-2) Length = 529 Score = 34.7 bits (78), Expect = 0.24 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%) Frame = -2 Query: 383 ILAAFFRVPKRIGWVPT*CCNENQRYISNVPYSNVDNSKLEVWIRRSDDRRHHKA----N 216 I +A ++P+++ W R+ N P + N++L WI ++D H K Sbjct: 324 IASALAQIPQKVLW----------RFDGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFIT 373 Query: 215 QGSRHGTYNNIYWNIPPLHQLLESDRAAQLGKYKAR 108 G +G Y IY IP + L +D+ + KAR Sbjct: 374 HGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKAR 409
>UDB4_HUMAN (P06133) UDP-glucuronosyltransferase 2B4 precursor (EC 2.4.1.17)| (UDPGT) (Hyodeoxycholic acid) (HLUG25) (UDPGTh-1) Length = 528 Score = 34.3 bits (77), Expect = 0.32 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 4/96 (4%) Frame = -2 Query: 383 ILAAFFRVPKRIGWVPT*CCNENQRYISNVPYSNVDNSKLEVWIRRSDDRRHHKA----N 216 I +A ++P+++ W R+ N P + N++L WI ++D H K Sbjct: 324 IASALAKIPQKVLW----------RFDGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFIT 373 Query: 215 QGSRHGTYNNIYWNIPPLHQLLESDRAAQLGKYKAR 108 G +G Y IY IP + L +D+ + KA+ Sbjct: 374 HGGANGIYEAIYHGIPMVGVPLFADQPDNIAHMKAK 409
>UDB33_MACMU (Q9GLD9) UDP-glucuronosyltransferase 2B33 precursor (EC 2.4.1.17)| (UDPGT) Length = 529 Score = 33.1 bits (74), Expect = 0.70 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Frame = -2 Query: 383 ILAAFFRVPKRIGWVPT*CCNENQRYISNVPYSNVDNSKLEVWIRRSDDRRHHKA----N 216 I +A ++P+++ W R+ N P + N++L WI ++D H K Sbjct: 324 IASALAQIPQKVLW----------RFDGNKPDTLGVNTRLYKWIPQNDLLGHPKTKAFIT 373 Query: 215 QGSRHGTYNNIYWNIPPLHQLLESDRAAQLGKYKAR 108 G +G Y IY +P + L +D+ + K R Sbjct: 374 HGGANGIYEAIYHGVPMVGIPLFADQPDNIAHMKTR 409
>UDB23_MACFA (Q9TSL6) UDP-glucuronosyltransferase 2B23 precursor (EC 2.4.1.17)| (UDPGT) Length = 529 Score = 33.1 bits (74), Expect = 0.70 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Frame = -2 Query: 383 ILAAFFRVPKRIGWVPT*CCNENQRYISNVPYSNVDNSKLEVWIRRSDDRRHHKA----N 216 I +A ++P+++ W R+ N P + N++L WI ++D H K Sbjct: 324 IASALAQIPQKVLW----------RFDGNKPDTLGVNTRLYKWIPQNDLLGHPKTKAFIT 373 Query: 215 QGSRHGTYNNIYWNIPPLHQLLESDRAAQLGKYKAR 108 G +G Y IY +P + L +D+ + K R Sbjct: 374 HGGANGIYEAIYHGVPMVGIPLFADQPDNIAHMKTR 409
>UDA1_HUMAN (Q9Y4X1) UDP-glucuronosyltransferase 2A1 precursor (EC 2.4.1.17)| Length = 527 Score = 33.1 bits (74), Expect = 0.70 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 4/96 (4%) Frame = -2 Query: 383 ILAAFFRVPKRIGWVPT*CCNENQRYISNVPYSNVDNSKLEVWIRRSDDRRHHKA----N 216 I +A ++P+++ W RY P + +N++L WI ++D H K Sbjct: 322 IASALAQIPQKVLW----------RYKGKKPATLGNNTQLFDWIPQNDLLGHPKTKAFIT 371 Query: 215 QGSRHGTYNNIYWNIPPLHQLLESDRAAQLGKYKAR 108 G +G Y IY +P + + +D+ + KA+ Sbjct: 372 HGGTNGIYEAIYHGVPMVGVPMFADQPDNIAHMKAK 407
>UDB11_HUMAN (O75310) UDP-glucuronosyltransferase 2B11 precursor (EC 2.4.1.17)| (UDPGT) Length = 529 Score = 32.3 bits (72), Expect = 1.2 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 4/96 (4%) Frame = -2 Query: 383 ILAAFFRVPKRIGWVPT*CCNENQRYISNVPYSNVDNSKLEVWIRRSDDRRHHKA----N 216 I A ++P+++ W R+ N P + N++L WI ++D H K Sbjct: 324 IATALAKIPQKVLW----------RFDGNKPDALGLNTRLYKWIPQNDLLGHPKTRAFIT 373 Query: 215 QGSRHGTYNNIYWNIPPLHQLLESDRAAQLGKYKAR 108 G +G Y IY IP + L D+ + KA+ Sbjct: 374 HGGANGIYEAIYHGIPMVGIPLFFDQPDNIAHMKAK 409
>UDB10_HUMAN (P36537) UDP-glucuronosyltransferase 2B10 precursor (EC 2.4.1.17)| (UDPGT) Length = 528 Score = 32.3 bits (72), Expect = 1.2 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 4/96 (4%) Frame = -2 Query: 383 ILAAFFRVPKRIGWVPT*CCNENQRYISNVPYSNVDNSKLEVWIRRSDDRRHHKA----N 216 I A ++P+++ W R+ N P + N++L WI ++D H K Sbjct: 323 IATALAKIPQKVLW----------RFDGNKPDALGLNTRLYKWIPQNDLLGHPKTRAFIT 372 Query: 215 QGSRHGTYNNIYWNIPPLHQLLESDRAAQLGKYKAR 108 G +G Y IY IP + L D+ + KA+ Sbjct: 373 HGGANGIYEAIYHGIPMVGIPLFFDQPDNIAHMKAK 408
>ECM3_YEAST (Q99252) Extracellular matrix protein 3| Length = 613 Score = 32.3 bits (72), Expect = 1.2 Identities = 18/69 (26%), Positives = 36/69 (52%) Frame = +3 Query: 45 VNILQPNGRKLLNGLVFSLLLPCLIFSQLGSAITLEKLVQWWYIPVNIVVGAVSGSLIGF 224 +NIL + ++ +V ++LLPCL F+++ + I + I + V+ +G F Sbjct: 33 MNILTVQATRSISDIVLTILLPCLSFNKIVANIEDNDIKDVGIICLTSVILFATGLGFAF 92 Query: 225 VVASIIRPP 251 +V S++ P Sbjct: 93 IVRSVLPVP 101
>UDB18_MACFA (O97951) UDP-glucuronosyltransferase 2B18 precursor (EC 2.4.1.17)| (UDPGT) Length = 529 Score = 30.8 bits (68), Expect = 3.5 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Frame = -2 Query: 383 ILAAFFRVPKRIGWVPT*CCNENQRYISNVPYSNVDNSKLEVWIRRSDDRRHHKA----N 216 I +A ++P+++ W R+ P + N++L WI ++D H K Sbjct: 324 IASALAQIPQKVLW----------RFDGKKPDTLGLNTRLYKWIPQNDLLGHPKTRAFIT 373 Query: 215 QGSRHGTYNNIYWNIPPLHQLLESDRAAQLGKYKAR 108 G +G Y IY +P + L +D+ + KA+ Sbjct: 374 HGGSNGIYEAIYHGVPMVGIPLFADQPDNIAHMKAK 409
>UDB8_RAT (Q62789) UDP-glucuronosyltransferase 2B8 precursor (EC 2.4.1.17)| (UDPGT) (UGT2B-RH4) Length = 530 Score = 30.8 bits (68), Expect = 3.5 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%) Frame = -2 Query: 386 SILAAFFRVPKRIGWVPT*CCNENQRYISNVPYSNVDNSKLEVWIRRSDDRRHHKANQGS 207 +I +A ++P+++ W R+ P + N+++ WI ++D H K Sbjct: 324 TIASALAQIPQKVFW----------RFEGKKPDTLGPNTRVFKWIPQNDLLGHPKTKAFV 373 Query: 206 RHGTYNNIY----WNIPPL 162 HG N IY + IPP+ Sbjct: 374 THGGANGIYESIHYGIPPM 392
>RAGE_MOUSE (Q62151) Advanced glycosylation end product-specific receptor| precursor (Receptor for advanced glycosylation end products) Length = 403 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 6/60 (10%) Frame = +3 Query: 459 PPPGETFDGEGEKLPVLASEENAMPELGKYPTG------THTSTVPEEEPLLAVEGNQKG 620 PPP + +G LP+ S +PE+G G TH S P+E P +++ + G Sbjct: 264 PPPQVHWIKDGAPLPLAPSPVLLLPEVGHADEGTYSCVATHPSHGPQESPPVSIRVTETG 323
>Y1031_METJA (Q58437) Hypothetical protein MJ1031| Length = 308 Score = 30.4 bits (67), Expect = 4.6 Identities = 14/69 (20%), Positives = 36/69 (52%) Frame = +3 Query: 36 TKYVNILQPNGRKLLNGLVFSLLLPCLIFSQLGSAITLEKLVQWWYIPVNIVVGAVSGSL 215 +K IL+ K+LN +V + +P IF + ++ +++++ +PV I + + + Sbjct: 20 SKIFGILKEEHAKILNNIVIYIAMPSTIFLTISKNVSSSQILEFLKLPVVIFLCCLFVGI 79 Query: 216 IGFVVASII 242 + +++ I Sbjct: 80 LAYLLGKHI 88
>PGCA_CHICK (P07898) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2109 Score = 30.4 bits (67), Expect = 4.6 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +3 Query: 483 GEGEKLPVLASEENAMPELGKYPTGTHTSTVPEEEPLLAVEGNQKGTTS 629 GE LP L+ E +PEL +P+G S P P ++ + G TS Sbjct: 1047 GEHSGLPELSGEPFGVPELSGFPSGLDISGEPSGAPEVSGPVDVSGLTS 1095
>Y762_METJA (Q58172) Hypothetical protein MJ0762| Length = 342 Score = 30.4 bits (67), Expect = 4.6 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Frame = +3 Query: 90 VFSLLLPCLIFSQLGSAITLEKLVQWWYIP-VNIVVGAVSGSLI 218 +FSL++P +F +I L+ + WYIP V ++V ++GSLI Sbjct: 119 LFSLIVPFYMFKS--ESIKLDHVNPGWYIPPVGLIVIPIAGSLI 160
>Y576_METJA (Q57996) Hypothetical protein MJ0576| Length = 347 Score = 30.4 bits (67), Expect = 4.6 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Frame = +3 Query: 90 VFSLLLPCLIFSQLGSAITLEKLVQWWYIP-VNIVVGAVSGSLI 218 +FSL++P +F +I L+ + WYIP V ++V ++GSLI Sbjct: 126 LFSLIVPFYMFKS--ESIKLDHVNPGWYIPPVGLIVIPIAGSLI 167
>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like| protein 1) Length = 870 Score = 30.0 bits (66), Expect = 6.0 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = -1 Query: 489 LHHQRSLLVVEKAS*THMCKQ*SHQPIDQMKY-THFHLGCIFQSPQKDWMGPD 334 L H++ LLV ++ ++ KQ Q ++Q + F L C+ P+KDW D Sbjct: 735 LIHEKHLLVRRESELIYVFKQ---QNLEQRQADVEFELRCLLNKPEKDWTDED 784
>YL152_YEAST (P54072) Protein YLR152C| Length = 576 Score = 30.0 bits (66), Expect = 6.0 Identities = 33/199 (16%), Positives = 84/199 (42%), Gaps = 4/199 (2%) Frame = +3 Query: 3 FTVCFMGFLMATKYVNILQPNGRKLLNGLVFSLLLPCLIFSQLGSAITLEKLVQWWYIPV 182 +T+ +G+L+A +I+ K ++ +V + +LPCL F+++ S I+ + + I + Sbjct: 20 YTIMLVGYLVAK--FDIVSMENAKGISNMVVNAILPCLTFNKIVSNISWRDIKEIGVIIL 77 Query: 183 NIVVGAVSGSLIGFVVASIIRPPYPYFKFTVXXXXXXXXXXXPLVLIAALCRDPSNPFGD 362 + + V G+ P +F + P+ I ++ + Sbjct: 78 SAFILFVLGATGALFTTFATTVPKKFFWGLIFAGFFPNISDLPIAYIQSMGNGSIFTAEE 137 Query: 363 SEKCSQDGNAYISFGQWVGAIIVYTY-VFKMLSPPPGETFDGEGEKLPVLAS---EENAM 530 ++K G AY ++ + ++ + +++++ +T + + E + S ++ + Sbjct: 138 ADK----GVAYSCIFLFIQSFLMMNFGMWRVVGLDFRDTKEPDSENITPSVSPAIDDRKL 193 Query: 531 PELGKYPTGTHTSTVPEEE 587 E+ K P T + + E Sbjct: 194 TEITKLPNITRPTNAYQSE 212
>UDB1_RAT (P09875) UDP-glucuronosyltransferase 2B1 precursor (EC 2.4.1.17)| (UDPGT) (UDPGTr-2) Length = 529 Score = 29.6 bits (65), Expect = 7.8 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%) Frame = -2 Query: 383 ILAAFFRVPKRIGWVPT*CCNENQRYISNVPYSNVDNSKLEVWIRRSDDRRHHKAN---- 216 + +A ++P+++ W R+ P + N++L WI ++D H K Sbjct: 325 VASALAQIPQKVVW----------RFDGKKPDTLGSNTRLYKWIPQNDLLGHPKTKAFVA 374 Query: 215 QGSRHGTYNNIYWNIP 168 G +G Y IY IP Sbjct: 375 HGGTNGIYEAIYHGIP 390
>UDB14_RABIT (P36513) UDP-glucuronosyltransferase 2B14 precursor (EC 2.4.1.17)| (UDPGT) (EGT12) Length = 530 Score = 29.6 bits (65), Expect = 7.8 Identities = 18/68 (26%), Positives = 31/68 (45%) Frame = -2 Query: 383 ILAAFFRVPKRIGWVPT*CCNENQRYISNVPYSNVDNSKLEVWIRRSDDRRHHKANQGSR 204 I +AF ++P+++ W R+ P + N+++ WI ++D H K Sbjct: 325 IASAFAQLPQKVIW----------RFDGQKPETLGPNTRIYDWIPQNDLLGHPKTKAFVT 374 Query: 203 HGTYNNIY 180 HG N IY Sbjct: 375 HGGANGIY 382
>VP5_AHSV4 (Q02168) Outer capsid protein VP5| Length = 505 Score = 29.6 bits (65), Expect = 7.8 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Frame = +1 Query: 322 LQHYVGTHPILLGTLKNAAKMEMRIFHLVNGLVRLLFTH----MCSRCFLHHQERPLM 483 LQ +GTHPI +G++ A E LV+ +RL++ C R L Q R LM Sbjct: 442 LQRSMGTHPIYMGSMDYAISYE----QLVSNAMRLVYDSELQMHCLRGPLKFQRRTLM 495 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,227,942 Number of Sequences: 219361 Number of extensions: 2234008 Number of successful extensions: 6576 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 6332 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6572 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
