ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9e16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ERC2_MOUSE (Q6PH08) ERC protein 2 (CAZ-associated structural pro... 31 3.0
2ERC2_HUMAN (O15083) ERC protein 2 31 3.0
3CD19_MOUSE (P25918) B-lymphocyte antigen CD19 precursor (B-lymph... 30 5.2
4BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231) 30 6.7
5EFTS_SYNEL (Q8DIA3) Elongation factor Ts (EF-Ts) 30 6.7
6IF2_AZOSE (Q5NZS1) Translation initiation factor IF-2 30 8.8
7VU47_HHV6Z (P52549) Glycoprotein U47 precursor 30 8.8

>ERC2_MOUSE (Q6PH08) ERC protein 2 (CAZ-associated structural protein 1)|
           (CAST1)
          Length = 957

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +2

Query: 263 LPKLKI*SSHPRASKTRLERLKQHLSKNQPLILCQRLRLTSIPFQ 397
           + ++++  SH +  KT++++LKQ LSK +  +L  + +L ++  Q
Sbjct: 419 IKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQ 463



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>ERC2_HUMAN (O15083) ERC protein 2|
          Length = 957

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +2

Query: 263 LPKLKI*SSHPRASKTRLERLKQHLSKNQPLILCQRLRLTSIPFQ 397
           + ++++  SH +  KT++++LKQ LSK +  +L  + +L ++  Q
Sbjct: 419 IKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQ 463



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>CD19_MOUSE (P25918) B-lymphocyte antigen CD19 precursor (B-lymphocyte surface|
           antigen B4) (Leu-12) (Differentiation antigen CD19)
          Length = 547

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -3

Query: 320 VPILSWMLEGENSISSAWVDGTLLLSDEHPGPSDDTFFILGELCNNSSLASEICVVERSS 141
           V +LS  L GE+ +   WV G+LLL  +     + T++ L     N ++   + V+ RS+
Sbjct: 221 VSLLSLSLGGEHPVREMWVWGSLLLLPQATALDEGTYYCLR---GNLTIERHVKVIARSA 277



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>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 259  PSTQAEDIEFSPSSIQDKIGTAEATSFQEPTPDPLPAAEADKHP 390
            PS+ +E   FSP     K+G      F   TP P PA++  + P
Sbjct: 1481 PSSPSESPTFSPG----KMGPRATAEFSTQTPSPAPASDMPRSP 1520



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>EFTS_SYNEL (Q8DIA3) Elongation factor Ts (EF-Ts)|
          Length = 297

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 322 AEATSFQEPTPDPLPAAEADKHPISTSEPEIVDKSXXXXXXXXXXXXKNPG 474
           A A + +EPTP+P+ AAE    P+S    E+V++             K+ G
Sbjct: 242 AAAVTAEEPTPEPVAAAEQPAEPVS----ELVEQPGAESKGFGAATKKSGG 288



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>IF2_AZOSE (Q5NZS1) Translation initiation factor IF-2|
          Length = 945

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 13/107 (12%)
 Frame = +1

Query: 130 KEDAELLSTTQISEAREELLQSSPRMKNVXXXXXXXXXXXXNVPSTQAED---------I 282
           K+ +E+ +T   S  R   +Q   R K V            ++ S Q E+         I
Sbjct: 68  KQTSEIRATD--SSGRARTVQVEVRKKRVFMKRDEVSAETGSLESAQIEEETAGLPMGEI 125

Query: 283 EFSPS--SIQDKIGTA--EATSFQEPTPDPLPAAEADKHPISTSEPE 411
           E +P   +I + +  A  E    +EP P+P P  E +  P    EPE
Sbjct: 126 EPTPEPENIVEPVAEAIPEPEPVREPEPEPEPIVEPEPEPEPEPEPE 172



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>VU47_HHV6Z (P52549) Glycoprotein U47 precursor|
          Length = 738

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 18/77 (23%), Positives = 31/77 (40%)
 Frame = +1

Query: 145 LLSTTQISEAREELLQSSPRMKNVXXXXXXXXXXXXNVPSTQAEDIEFSPSSIQDKIGTA 324
           L +TT    + ++  + SP+  NV            ++ +T       +PSS    I + 
Sbjct: 199 LYNTTSCIRSNDQYFEHSPKPINVTTSFGRAIVNFHSILTTTPSS---TPSSTSASITSP 255

Query: 325 EATSFQEPTPDPLPAAE 375
              S   PTP+P P  +
Sbjct: 256 HIPSTNTPTPEPSPVTK 272


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,138,729
Number of Sequences: 219361
Number of extensions: 1864102
Number of successful extensions: 5152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5084
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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