ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9e16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103570.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 6e-44
2dbj|AK061986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 6e-44
3ref|NM_191382.1| Oryza sativa (japonica cultivar-group), predic... 176 6e-41
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 176 6e-41
5dbj|AP003377.3| Oryza sativa (japonica cultivar-group) genomic D... 176 6e-41
6gb|AY108769.1| Zea mays PCO138266 mRNA sequence 113 8e-22
7ref|XM_475688.1| Oryza sativa (japonica cultivar-group), predic... 82 3e-12
8gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome... 82 3e-12
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
10dbj|AK070308.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 3e-12
11gb|AC152492.4| Rhinolophus ferrumequinum clone VMRC7-117I4, comp... 52 0.002
12gb|AC150242.3| Rhinolophus ferrumequinum clone VMRC7-331J24, com... 44 0.59
13gb|AC123748.10| Mus musculus chromosome 5, clone RP24-176M16, co... 44 0.59
14gb|AC110917.11| Mus musculus, clone RP23-155I20, complete sequence 44 0.59
15dbj|AP006585.1| Synechocystis sp. PCC 6803 plasmid pSYSX DNA, co... 44 0.59
16gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold 44 0.59
17ref|NM_001036408.1| Arabidopsis thaliana GRL/NAP1/NAPP AT2G35110... 40 9.3
18ref|NM_001034422.1| Bos taurus chromosome 20 open reading frame ... 40 9.3
19gb|AY496700.1| Arabidopsis thaliana ARP2/3 regulatory protein su... 40 9.3
20ref|XM_459724.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 9.3
21emb|CR956649.3| Pig DNA sequence from clone PigE-92E11 on chromo... 40 9.3
22ref|XM_448887.1| Candida glabrata CBS138, CAGL0L02673g partial mRNA 40 9.3
23gb|AC121877.2| Mus musculus BAC clone RP24-127G8 from 7, complet... 40 9.3
24emb|CR730728.2|CNS0GQRX Tetraodon nigroviridis full-length cDNA 40 9.3
25emb|CR728494.2|CNS0GP1W Tetraodon nigroviridis full-length cDNA 40 9.3
26emb|CR726065.2|CNS0GN6F Tetraodon nigroviridis full-length cDNA 40 9.3
27emb|CR723782.2|CNS0GLF0 Tetraodon nigroviridis full-length cDNA 40 9.3
28emb|CR664258.2|CNS0FBIG Tetraodon nigroviridis full-length cDNA 40 9.3
29ref|NM_001008190.1| Xenopus tropicalis olig3 protein (olig3), mRNA 40 9.3
30gb|BC082516.1| Xenopus tropicalis olig3 protein, mRNA (cDNA clon... 40 9.3
31gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 40 9.3
32gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 40 9.3
33emb|Y14558.1|PSY14558 Pisum sativum mRNA for topoisomerase I 40 9.3
34emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 40 9.3
35emb|CR380958.1| Candida glabrata strain CBS138 chromosome L comp... 40 9.3
36emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segmen... 40 9.3
37emb|AL606590.3|OSJN00031 Oryza sativa genomic DNA, chromosome 4,... 40 9.3
38gb|AF016440.2| Caenorhabditis elegans cosmid F29G9, complete seq... 40 9.3
39ref|NM_167387.1| Drosophila melanogaster CG32611-RB (CG32611), mRNA 40 9.3
40gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map... 40 9.3
41gb|AY835433.1| Caenorhabditis elegans bZIP transcription factor ... 40 9.3
42gb|AY835432.1| Caenorhabditis elegans bZIP transcription factor ... 40 9.3
43gb|AC016948.4| Homo sapiens chromosome 3 BAC clone RP11-93N14 (R... 40 9.3
44ref|NM_001038392.1| Caenorhabditis elegans FOS (B-Zip transcript... 40 9.3
45ref|NM_001038391.1| Caenorhabditis elegans FOS (B-Zip transcript... 40 9.3
46tpg|BK004072.1| TPA: TPA_exp: Arabidopsis thaliana NAPP (NAPP) g... 40 9.3
47gb|BT022126.1| Drosophila melanogaster IP08939 full insert cDNA 40 9.3
48dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
49gb|AC010705.15|AC010705 Drosophila melanogaster, chromosome X, r... 40 9.3
50ref|XM_222633.3| PREDICTED: Rattus norvegicus protein phosphatas... 40 9.3
51gb|BT021696.1| Bos taurus chromosome 20 open reading frame 28 (C... 40 9.3
52ref|XM_551630.1| Anopheles gambiae str. PEST ENSANGP00000027297 ... 40 9.3
53gb|AE003494.4| Drosophila melanogaster chromosome X, section 46 ... 40 9.3
54emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 9.3
55gb|AC151534.2| Mus musculus BAC clone RP23-446E13 from 7, comple... 40 9.3
56gb|AC134461.4| Mus musculus BAC clone RP23-383E23 from 13, compl... 40 9.3
57gb|AC171684.1| Mus musculus BAC clone RP23-69D21 from chromosome... 40 9.3
58gb|AC164160.5| Mus musculus BAC clone RP23-343P15 from chromosom... 40 9.3
59gb|AC153844.3| Mus musculus 6 BAC RP23-376H18 (Roswell Park Canc... 40 9.3 
>dbj|AK103570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132M15, full
           insert sequence
          Length = 1621

 Score =  186 bits (94), Expect = 6e-44
 Identities = 169/193 (87%), Gaps = 1/193 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   acatgcattggctatagagcgtatagtaccaagcttatcatatctcagnaaccgaacttt 61
           |||||||||||||||||||||| | || |||||||| |||||||| || | |||| ||||
Sbjct: 684 acatgcattggctatagagcgtgttgttccaagcttgtcatatcttagga-ccgagcttt 742

                                                                       
Query: 62  gttcgaccaatatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaa 121
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gctctaccaatatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaa 802

                                                                       
Query: 122 agctcaataaggaagatgccgagcttctttcaacgacacaaatctcggaagcaagagaag 181
           | ||||  ||| ||||||| || |||||||||||| |||| |||    ||||||||||||
Sbjct: 803 aactcagcaagcaagatgctgaacttctttcaacgccacagatcctaaaagcaagagaag 862

                        
Query: 182 agttattgcaaag 194
             |||||||||||
Sbjct: 863 tattattgcaaag 875



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                        
Query: 372  tgaggctgacaagcatcccatttcaaccagcgagccggaaatagttgacaagtctgtaat 431
            |||||||||||||||||| ||||||  |   |||  ||||||| | |||||||| ||  |
Sbjct: 1014 tgaggctgacaagcatccgatttcagtcgctgaggtggaaataatagacaagtccgtggt 1073

                              
Query: 432  cgaagaagagctggtggt 449
             |||||||||||||||||
Sbjct: 1074 tgaagaagagctggtggt 1091



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 584  gggcaggacgaagatgtgtcattcagcgatctggaggatgacgatgatgatt 635
            |||||||| |||||  | || ||||| |||||||||||||| || |||||||
Sbjct: 1234 gggcaggaggaagacatatccttcagtgatctggaggatgaagaggatgatt 1285
to top
>dbj|AK061986.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B06, full
           insert sequence
          Length = 1590

 Score =  186 bits (94), Expect = 6e-44
 Identities = 169/193 (87%), Gaps = 1/193 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   acatgcattggctatagagcgtatagtaccaagcttatcatatctcagnaaccgaacttt 61
           |||||||||||||||||||||| | || |||||||| |||||||| || | |||| ||||
Sbjct: 664 acatgcattggctatagagcgtgttgttccaagcttgtcatatcttagga-ccgagcttt 722

                                                                       
Query: 62  gttcgaccaatatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaa 121
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gctctaccaatatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaa 782

                                                                       
Query: 122 agctcaataaggaagatgccgagcttctttcaacgacacaaatctcggaagcaagagaag 181
           | ||||  ||| ||||||| || |||||||||||| |||| |||    ||||||||||||
Sbjct: 783 aactcagcaagcaagatgctgaacttctttcaacgccacagatcctaaaagcaagagaag 842

                        
Query: 182 agttattgcaaag 194
             |||||||||||
Sbjct: 843 tattattgcaaag 855



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                        
Query: 372  tgaggctgacaagcatcccatttcaaccagcgagccggaaatagttgacaagtctgtaat 431
            |||||||||||||||||| ||||||  |   |||  ||||||| | |||||||| ||  |
Sbjct: 994  tgaggctgacaagcatccgatttcagtcgctgaggtggaaataatagacaagtccgtggt 1053

                              
Query: 432  cgaagaagagctggtggt 449
             |||||||||||||||||
Sbjct: 1054 tgaagaagagctggtggt 1071



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 584  gggcaggacgaagatgtgtcattcagcgatctggaggatgacgatgatgatt 635
            |||||||| |||||  | || ||||| |||||||||||||| || |||||||
Sbjct: 1214 gggcaggaggaagacatatccttcagtgatctggaggatgaagaggatgatt 1265
to top
>ref|NM_191382.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1575

 Score =  176 bits (89), Expect = 6e-41
 Identities = 143/160 (89%), Gaps = 1/160 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    acatgcattggctatagagcgtatagtaccaagcttatcatatctcagnaaccgaacttt 61
            |||||||||||||||||||||| | || |||||||| |||||||| || | |||| ||||
Sbjct: 912  acatgcattggctatagagcgtgttgttccaagcttgtcatatcttagga-ccgagcttt 970

                                                                        
Query: 62   gttcgaccaatatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaa 121
            | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  gctctaccaatatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaa 1030

                                                    
Query: 122  agctcaataaggaagatgccgagcttctttcaacgacaca 161
            | ||||  ||| ||||||| || |||||||||||| ||||
Sbjct: 1031 aactcagcaagcaagatgctgaacttctttcaacgccaca 1070



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                        
Query: 372  tgaggctgacaagcatcccatttcaaccagcgagccggaaatagttgacaagtctgtaat 431
            |||||||||||||||||| ||||||  |   |||  ||||||| | |||||||| ||  |
Sbjct: 1302 tgaggctgacaagcatccgatttcagtcgctgaggtggaaataatagacaagtccgtggt 1361

                              
Query: 432  cgaagaagagctggtggt 449
             |||||||||||||||||
Sbjct: 1362 tgaagaagagctggtggt 1379



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 584  gggcaggacgaagatgtgtcattcagcgatctggaggatgacgatgatgatt 635
            |||||||| |||||  | || ||||| |||||||||||||| || |||||||
Sbjct: 1522 gggcaggaggaagacatatccttcagtgatctggaggatgaagaggatgatt 1573
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  176 bits (89), Expect = 6e-41
 Identities = 143/160 (89%), Gaps = 1/160 (0%)
 Strand = Plus / Plus

                                                                            
Query: 2        acatgcattggctatagagcgtatagtaccaagcttatcatatctcagnaaccgaacttt 61
                |||||||||||||||||||||| | || |||||||| |||||||| || | |||| ||||
Sbjct: 32294287 acatgcattggctatagagcgtgttgttccaagcttgtcatatcttagga-ccgagcttt 32294345

                                                                            
Query: 62       gttcgaccaatatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaa 121
                | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32294346 gctctaccaatatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaa 32294405

                                                        
Query: 122      agctcaataaggaagatgccgagcttctttcaacgacaca 161
                | ||||  ||| ||||||| || |||||||||||| ||||
Sbjct: 32294406 aactcagcaagcaagatgctgaacttctttcaacgccaca 32294445



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                            
Query: 372      tgaggctgacaagcatcccatttcaaccagcgagccggaaatagttgacaagtctgtaat 431
                |||||||||||||||||| ||||||  |   |||  ||||||| | |||||||| ||  |
Sbjct: 32295686 tgaggctgacaagcatccgatttcagtcgctgaggtggaaataatagacaagtccgtggt 32295745

                                  
Query: 432      cgaagaagagctggtggt 449
                 |||||||||||||||||
Sbjct: 32295746 tgaagaagagctggtggt 32295763



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 584      gggcaggacgaagatgtgtcattcagcgatctggaggatgacgatgatgatt 635
                |||||||| |||||  | || ||||| |||||||||||||| || |||||||
Sbjct: 32295906 gggcaggaggaagacatatccttcagtgatctggaggatgaagaggatgatt 32295957
to top
>dbj|AP003377.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0053G03
          Length = 101901

 Score =  176 bits (89), Expect = 6e-41
 Identities = 143/160 (89%), Gaps = 1/160 (0%)
 Strand = Plus / Plus

                                                                         
Query: 2     acatgcattggctatagagcgtatagtaccaagcttatcatatctcagnaaccgaacttt 61
             |||||||||||||||||||||| | || |||||||| |||||||| || | |||| ||||
Sbjct: 26572 acatgcattggctatagagcgtgttgttccaagcttgtcatatcttagga-ccgagcttt 26630

                                                                         
Query: 62    gttcgaccaatatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaa 121
             | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26631 gctctaccaatatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaa 26690

                                                     
Query: 122   agctcaataaggaagatgccgagcttctttcaacgacaca 161
             | ||||  ||| ||||||| || |||||||||||| ||||
Sbjct: 26691 aactcagcaagcaagatgctgaacttctttcaacgccaca 26730



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                         
Query: 372   tgaggctgacaagcatcccatttcaaccagcgagccggaaatagttgacaagtctgtaat 431
             |||||||||||||||||| ||||||  |   |||  ||||||| | |||||||| ||  |
Sbjct: 27971 tgaggctgacaagcatccgatttcagtcgctgaggtggaaataatagacaagtccgtggt 28030

                               
Query: 432   cgaagaagagctggtggt 449
              |||||||||||||||||
Sbjct: 28031 tgaagaagagctggtggt 28048



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                 
Query: 584   gggcaggacgaagatgtgtcattcagcgatctggaggatgacgatgatgatt 635
             |||||||| |||||  | || ||||| |||||||||||||| || |||||||
Sbjct: 28191 gggcaggaggaagacatatccttcagtgatctggaggatgaagaggatgatt 28242
to top
>gb|AY108769.1| Zea mays PCO138266 mRNA sequence
          Length = 1388

 Score =  113 bits (57), Expect = 8e-22
 Identities = 150/180 (83%), Gaps = 1/180 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   acatgcattggctatagagcgtatagtaccaagcttatcatatctcagnaaccgaacttt 61
           ||||||| | |||||||||||  | ||||||||| ||||||| ||||| | | || ||||
Sbjct: 368 acatgcagttgctatagagcggcttgtaccaagcctatcatacctcagga-ctgagcttt 426

                                                                       
Query: 62  gttcgaccaatatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaa 121
           | || ||||||||||||||||| ||||| |||||||| |||||||||||||| || || |
Sbjct: 427 gctctaccaatatgagtgaagcgtgcttctggaagatatattttgtgcttctccattcga 486

                                                                       
Query: 122 agctcaataaggaagatgccgagcttctttcaacgacacaaatctcggaagcaagagaag 181
           | ||||  ||| ||||||| ||  ||||||||||  ||||||||  ||||||||||||||
Sbjct: 487 aactcagcaagcaagatgctgaaattctttcaacaccacaaatcctggaagcaagagaag 546



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                       
Query: 372 tgaggctgacaagcatcccatttcaaccagcgagccggaaatagttgacaagtctgtaat 431
           |||||||||||||||||| || ||||  |  ||| | |||||||||||||||||||||||
Sbjct: 710 tgaggctgacaagcatcctatctcaagtactgaggcagaaatagttgacaagtctgtaat 769

                           
Query: 432 cgaagaagagctggtg 447
             |||||||| |||||
Sbjct: 770 tcaagaagagttggtg 785
to top
>ref|XM_475688.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 891

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                       
Query: 71  atatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaaagctcaata 130
           |||||||||||||||| || |||||||| |||||||||||||| ||||| || ||||| |
Sbjct: 296 atatgagtgaagcatgtttctggaagatatattttgtgcttctgcactcgaaactcaaca 355

                                    
Query: 131 aggaagatgccgagcttctttcaac 155
           || |||| || || |||||||||||
Sbjct: 356 agcaagacgctgaacttctttcaac 380



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 587 caggacgaagatgtgtcattcagcgatctggaggatgacgatga 630
           ||||| |||||||| || ||||| ||||||||||||||||||||
Sbjct: 820 caggaggaagatgtatcgttcagtgatctggaggatgacgatga 863
to top
>gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_B11,
             complete sequence
          Length = 162772

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                         
Query: 71    atatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaaagctcaata 130
             |||||||||||||||| || |||||||| |||||||||||||| ||||| || ||||| |
Sbjct: 39844 atatgagtgaagcatgtttctggaagatatattttgtgcttctgcactcgaaactcaaca 39903

                                      
Query: 131   aggaagatgccgagcttctttcaac 155
             || |||| || || |||||||||||
Sbjct: 39904 agcaagacgctgaacttctttcaac 39928



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 587   caggacgaagatgtgtcattcagcgatctggaggatgacgatga 630
             ||||| |||||||| || ||||| ||||||||||||||||||||
Sbjct: 41013 caggaggaagatgtatcgttcagtgatctggaggatgacgatga 41056
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                            
Query: 71       atatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaaagctcaata 130
                |||||||||||||||| || |||||||| |||||||||||||| ||||| || ||||| |
Sbjct: 25097189 atatgagtgaagcatgtttctggaagatatattttgtgcttctgcactcgaaactcaaca 25097248

                                         
Query: 131      aggaagatgccgagcttctttcaac 155
                || |||| || || |||||||||||
Sbjct: 25097249 agcaagacgctgaacttctttcaac 25097273



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 587      caggacgaagatgtgtcattcagcgatctggaggatgacgatga 630
                ||||| |||||||| || ||||| ||||||||||||||||||||
Sbjct: 25098358 caggaggaagatgtatcgttcagtgatctggaggatgacgatga 25098401
to top
>dbj|AK070308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049A10, full
           insert sequence
          Length = 1506

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                       
Query: 71  atatgagtgaagcatgcttttggaagatctattttgtgcttcttcactcaaagctcaata 130
           |||||||||||||||| || |||||||| |||||||||||||| ||||| || ||||| |
Sbjct: 601 atatgagtgaagcatgtttctggaagatatattttgtgcttctgcactcgaaactcaaca 660

                                    
Query: 131 aggaagatgccgagcttctttcaac 155
           || |||| || || |||||||||||
Sbjct: 661 agcaagacgctgaacttctttcaac 685



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                        
Query: 587  caggacgaagatgtgtcattcagcgatctggaggatgacgatga 630
            ||||| |||||||| || ||||| ||||||||||||||||||||
Sbjct: 1125 caggaggaagatgtatcgttcagtgatctggaggatgacgatga 1168
to top
>gb|AC152492.4| Rhinolophus ferrumequinum clone VMRC7-117I4, complete sequence
          Length = 135666

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 81    agcatgcttttggaagatctattttg 106
             ||||||||||||||||||||||||||
Sbjct: 90934 agcatgcttttggaagatctattttg 90959
to top
>gb|AC150242.3| Rhinolophus ferrumequinum clone VMRC7-331J24, complete sequence
          Length = 120894

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 81   agcatgcttttggaagatctattttg 106
            |||||||||||||||| |||||||||
Sbjct: 3251 agcatgcttttggaaggtctattttg 3276
to top
>gb|AC123748.10| Mus musculus chromosome 5, clone RP24-176M16, complete sequence
          Length = 158365

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 88    ttttggaagatctattttgtgcttct 113
             ||||||||| ||||||||||||||||
Sbjct: 23007 ttttggaagctctattttgtgcttct 22982
to top
>gb|AC110917.11| Mus musculus, clone RP23-155I20, complete sequence
          Length = 193005

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 88     ttttggaagatctattttgtgcttct 113
              ||||||||| ||||||||||||||||
Sbjct: 179862 ttttggaagctctattttgtgcttct 179837
to top
>dbj|AP006585.1| Synechocystis sp. PCC 6803 plasmid pSYSX DNA, complete sequence
          Length = 106004

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 613   tctggaggatgacgatgatgat 634
             ||||||||||||||||||||||
Sbjct: 90341 tctggaggatgacgatgatgat 90362
to top
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 81      agcatgcttttggaagatctattttg 106
               |||||||||||||||| |||||||||
Sbjct: 1284313 agcatgcttttggaaggtctattttg 1284338
to top
>ref|NM_001036408.1| Arabidopsis thaliana GRL/NAP1/NAPP AT2G35110 (GRL/NAP1/NAPP)
           transcript variant AT2G35110.2 mRNA, complete cds
          Length = 4636

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 499 gatgatgacgacgacaaaga 518
           ||||||||||||||||||||
Sbjct: 65  gatgatgacgacgacaaaga 46
to top
>ref|NM_001034422.1| Bos taurus chromosome 20 open reading frame 28 (C20orf28), mRNA
          Length = 1412

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 605 ttcagcgatctggaggatga 624
           ||||||||||||||||||||
Sbjct: 713 ttcagcgatctggaggatga 694
to top
>gb|AY496700.1| Arabidopsis thaliana ARP2/3 regulatory protein subunit NAPP mRNA,
           complete cds
          Length = 4570

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 499 gatgatgacgacgacaaaga 518
           ||||||||||||||||||||
Sbjct: 65  gatgatgacgacgacaaaga 46
to top
>ref|XM_459724.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E10131g)
           partial mRNA
          Length = 681

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 617 gaggatgacgatgatgatta 636
           ||||||||||||||||||||
Sbjct: 589 gaggatgacgatgatgatta 608
to top
>emb|CR956649.3| Pig DNA sequence from clone PigE-92E11 on chromosome 6, complete
            sequence
          Length = 127453

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 615  tggaggatgacgatgatgat 634
            ||||||||||||||||||||
Sbjct: 6616 tggaggatgacgatgatgat 6597
to top
>ref|XM_448887.1| Candida glabrata CBS138, CAGL0L02673g partial mRNA
          Length = 2565

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 610 cgatctggaggatgacgatgatga 633
           ||||||||| ||||||||||||||
Sbjct: 81  cgatctggatgatgacgatgatga 104
to top
>gb|AC121877.2| Mus musculus BAC clone RP24-127G8 from 7, complete sequence
          Length = 130451

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 658   ccaaaacccagtgcctgata 677
             ||||||||||||||||||||
Sbjct: 63630 ccaaaacccagtgcctgata 63611
to top
>emb|CR730728.2|CNS0GQRX Tetraodon nigroviridis full-length cDNA
          Length = 1206

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 415  gttgacaagtctgtaatcga 434
            ||||||||||||||||||||
Sbjct: 1130 gttgacaagtctgtaatcga 1149
to top
>emb|CR728494.2|CNS0GP1W Tetraodon nigroviridis full-length cDNA
          Length = 1553

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 415  gttgacaagtctgtaatcga 434
            ||||||||||||||||||||
Sbjct: 1449 gttgacaagtctgtaatcga 1468
to top
>emb|CR726065.2|CNS0GN6F Tetraodon nigroviridis full-length cDNA
          Length = 1239

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 415  gttgacaagtctgtaatcga 434
            ||||||||||||||||||||
Sbjct: 1135 gttgacaagtctgtaatcga 1154
to top
>emb|CR723782.2|CNS0GLF0 Tetraodon nigroviridis full-length cDNA
          Length = 1553

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 415  gttgacaagtctgtaatcga 434
            ||||||||||||||||||||
Sbjct: 1448 gttgacaagtctgtaatcga 1467
to top
>emb|CR664258.2|CNS0FBIG Tetraodon nigroviridis full-length cDNA
          Length = 387

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 415 gttgacaagtctgtaatcga 434
           ||||||||||||||||||||
Sbjct: 283 gttgacaagtctgtaatcga 302
to top
>ref|NM_001008190.1| Xenopus tropicalis olig3 protein (olig3), mRNA
          Length = 1847

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 441 gctggtggtcataactgaaa 460
           ||||||||||||||||||||
Sbjct: 886 gctggtggtcataactgaaa 867
to top
>gb|BC082516.1| Xenopus tropicalis olig3 protein, mRNA (cDNA clone MGC:89336
           IMAGE:6987669), complete cds
          Length = 1847

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 441 gctggtggtcataactgaaa 460
           ||||||||||||||||||||
Sbjct: 886 gctggtggtcataactgaaa 867
to top
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 230     ctgggtgctcatcagaaagcagca 253
               ||||||||||| ||||||||||||
Sbjct: 1582244 ctgggtgctcaccagaaagcagca 1582267
to top
>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 617    gaggatgacgatgatgatta 636
              ||||||||||||||||||||
Sbjct: 968016 gaggatgacgatgatgatta 967997
to top
>emb|Y14558.1|PSY14558 Pisum sativum mRNA for topoisomerase I
          Length = 3055

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 615 tggaggatgacgatgatgat 634
           ||||||||||||||||||||
Sbjct: 551 tggaggatgacgatgatgat 570
to top
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
              hansenii
          Length = 2037969

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 617    gaggatgacgatgatgatta 636
              ||||||||||||||||||||
Sbjct: 758658 gaggatgacgatgatgatta 758677
to top
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence
          Length = 1440588

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 610    cgatctggaggatgacgatgatga 633
              ||||||||| ||||||||||||||
Sbjct: 315646 cgatctggatgatgacgatgatga 315623
to top
>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7
          Length = 349652

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    tctgccagcggctgaggctg 379
              ||||||||||||||||||||
Sbjct: 185150 tctgccagcggctgaggctg 185169
to top
>emb|AL606590.3|OSJN00031 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052O21,
              complete sequence
          Length = 166475

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 499    gatgatgacgacgacaaaga 518
              ||||||||||||||||||||
Sbjct: 155676 gatgatgacgacgacaaaga 155695
to top
>gb|AF016440.2| Caenorhabditis elegans cosmid F29G9, complete sequence
          Length = 42751

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 615   tggaggatgacgatgatgat 634
             ||||||||||||||||||||
Sbjct: 13018 tggaggatgacgatgatgat 13037
to top
>ref|NM_167387.1| Drosophila melanogaster CG32611-RB (CG32611), mRNA
          Length = 3313

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 611  gatctggaggatgacgatga 630
            ||||||||||||||||||||
Sbjct: 1570 gatctggaggatgacgatga 1589
to top
>gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map ve016, complete
             sequence
          Length = 91863

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 499   gatgatgacgacgacaaaga 518
             ||||||||||||||||||||
Sbjct: 65688 gatgatgacgacgacaaaga 65669
to top
>gb|AY835433.1| Caenorhabditis elegans bZIP transcription factor FOS-1b (fos-1)
           mRNA, complete cds
          Length = 1219

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 615 tggaggatgacgatgatgat 634
           ||||||||||||||||||||
Sbjct: 285 tggaggatgacgatgatgat 304
to top
>gb|AY835432.1| Caenorhabditis elegans bZIP transcription factor FOS-1a (fos-1)
           mRNA, complete cds
          Length = 1414

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 615 tggaggatgacgatgatgat 634
           ||||||||||||||||||||
Sbjct: 480 tggaggatgacgatgatgat 499
to top
>gb|AC016948.4| Homo sapiens chromosome 3 BAC clone RP11-93N14 (Rosewell Park Cancer
             Institute Human Bac Library) complete sequence
          Length = 154350

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   tggaggattggctagaggat 540
             ||||||||||||||||||||
Sbjct: 46003 tggaggattggctagaggat 45984
to top
>ref|NM_001038392.1| Caenorhabditis elegans FOS (B-Zip transcription factor) homolog
           family member (fos-1) (fos-1) mRNA, complete cds
          Length = 1404

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 615 tggaggatgacgatgatgat 634
           ||||||||||||||||||||
Sbjct: 473 tggaggatgacgatgatgat 492
to top
>ref|NM_001038391.1| Caenorhabditis elegans FOS (B-Zip transcription factor) homolog
           family member (fos-1) (fos-1) mRNA, complete cds
          Length = 1187

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 615 tggaggatgacgatgatgat 634
           ||||||||||||||||||||
Sbjct: 256 tggaggatgacgatgatgat 275
to top
>tpg|BK004072.1| TPA: TPA_exp: Arabidopsis thaliana NAPP (NAPP) gene, complete cds
          Length = 8133

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 499 gatgatgacgacgacaaaga 518
           ||||||||||||||||||||
Sbjct: 65  gatgatgacgacgacaaaga 46
to top
>gb|BT022126.1| Drosophila melanogaster IP08939 full insert cDNA
          Length = 3001

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 611  gatctggaggatgacgatga 630
            ||||||||||||||||||||
Sbjct: 2059 gatctggaggatgacgatga 2078
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 499     gatgatgacgacgacaaaga 518
               ||||||||||||||||||||
Sbjct: 7134485 gatgatgacgacgacaaaga 7134504
to top
>gb|AC010705.15|AC010705 Drosophila melanogaster, chromosome X, region 12D-12E, BAC clone
             BACR28F21, complete sequence
          Length = 163958

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 611   gatctggaggatgacgatga 630
             ||||||||||||||||||||
Sbjct: 56745 gatctggaggatgacgatga 56726
to top
>ref|XM_222633.3| PREDICTED: Rattus norvegicus protein phosphatase 1, regulatory
           (inhibitor) subunit 15b (predicted)
           (Ppp1r15b_predicted), mRNA
          Length = 2358

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 365 cagcggctgaggctgacaagcatc 388
           |||||||||||| |||||||||||
Sbjct: 795 cagcggctgagggtgacaagcatc 772
to top
>gb|BT021696.1| Bos taurus chromosome 20 open reading frame 28 (C20orf28), mRNA,
           complete cds
          Length = 1412

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 605 ttcagcgatctggaggatga 624
           ||||||||||||||||||||
Sbjct: 713 ttcagcgatctggaggatga 694
to top
>ref|XM_551630.1| Anopheles gambiae str. PEST ENSANGP00000027297
           (ENSANGG00000023714), partial mRNA
          Length = 576

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 614 ctggaggatgacgatgatga 633
           ||||||||||||||||||||
Sbjct: 460 ctggaggatgacgatgatga 479
to top
>gb|AE003494.4| Drosophila melanogaster chromosome X, section 46 of 74 of the complete
             sequence
          Length = 310498

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 611   gatctggaggatgacgatga 630
             ||||||||||||||||||||
Sbjct: 20933 gatctggaggatgacgatga 20914
to top
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 492    cactccggatgatgacgacg 511
              ||||||||||||||||||||
Sbjct: 144226 cactccggatgatgacgacg 144207
to top
>gb|AC151534.2| Mus musculus BAC clone RP23-446E13 from 7, complete sequence
          Length = 184053

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 658    ccaaaacccagtgcctgata 677
              ||||||||||||||||||||
Sbjct: 147938 ccaaaacccagtgcctgata 147957
to top
>gb|AC134461.4| Mus musculus BAC clone RP23-383E23 from 13, complete sequence
          Length = 183572

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 239    catcagaaagcagcaatgtt 258
              ||||||||||||||||||||
Sbjct: 111506 catcagaaagcagcaatgtt 111487
to top
>gb|AC171684.1| Mus musculus BAC clone RP23-69D21 from chromosome 8, complete sequence
          Length = 255017

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 337    ttccaagaaccaacccctgatcctctgc 364
              ||||||||||||| ||| ||||||||||
Sbjct: 237168 ttccaagaaccaaacccagatcctctgc 237141
to top
>gb|AC164160.5| Mus musculus BAC clone RP23-343P15 from chromosome 7, complete sequence
          Length = 235030

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 658    ccaaaacccagtgcctgata 677
              ||||||||||||||||||||
Sbjct: 159439 ccaaaacccagtgcctgata 159420
to top
>gb|AC153844.3| Mus musculus 6 BAC RP23-376H18 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 192895

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 499   gatgatgacgacgacaaaga 518
             ||||||||||||||||||||
Sbjct: 89005 gatgatgacgacgacaaaga 88986


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,809,839
Number of Sequences: 3902068
Number of extensions: 5809839
Number of successful extensions: 115316
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114981
Number of HSP's gapped (non-prelim): 326
length of query: 679
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 656
effective length of database: 17,143,297,704
effective search space: 11246003293824
effective search space used: 11246003293824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top