ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8p09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY640218.1| Hymenophyton leptopodum isolate HL_Tas 5.8S ribos... 38 0.78
2gb|AY640217.1| Hymenophyton flabellatum isolate HF5 5.8S ribosom... 38 0.78
3gb|AY640216.1| Hymenophyton flabellatum isolate HF3 5.8S ribosom... 38 0.78
4gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 38 0.78
5ref|XM_539175.2| PREDICTED: Canis familiaris similar to CG32333-... 36 3.1

>gb|AY640218.1| Hymenophyton leptopodum isolate HL_Tas 5.8S ribosomal RNA gene,
           partial sequence; internal transcribed spacer 2,
           complete sequence; and 26S ribosomal RNA gene, partial
           sequence
          Length = 373

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 11  tcccctccgggggtggaag 29
           |||||||||||||||||||
Sbjct: 249 tcccctccgggggtggaag 267



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>gb|AY640217.1| Hymenophyton flabellatum isolate HF5 5.8S ribosomal RNA gene,
           partial sequence; internal transcribed spacer 2,
           complete sequence; and 26S ribosomal RNA gene, partial
           sequence
          Length = 372

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 11  tcccctccgggggtggaag 29
           |||||||||||||||||||
Sbjct: 249 tcccctccgggggtggaag 267



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>gb|AY640216.1| Hymenophyton flabellatum isolate HF3 5.8S ribosomal RNA gene,
           partial sequence; internal transcribed spacer 2,
           complete sequence; and 26S ribosomal RNA gene, partial
           sequence
          Length = 388

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 11  tcccctccgggggtggaag 29
           |||||||||||||||||||
Sbjct: 265 tcccctccgggggtggaag 283



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 2       cgccgacgctcccctccgg 20
               |||||||||||||||||||
Sbjct: 2759544 cgccgacgctcccctccgg 2759562



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>ref|XM_539175.2| PREDICTED: Canis familiaris similar to CG32333-PA, isoform A
           (LOC482054), mRNA
          Length = 3372

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 12  cccctccgggggtggaag 29
           ||||||||||||||||||
Sbjct: 470 cccctccgggggtggaag 453


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 126,109
Number of Sequences: 3902068
Number of extensions: 126109
Number of successful extensions: 30238
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30190
Number of HSP's gapped (non-prelim): 48
length of query: 34
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 14
effective length of database: 17,155,003,908
effective search space: 240170054712
effective search space used: 240170054712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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