ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8p06 |
|---|---|
| Clone Library Name | barley_pub |
>MA2B1_CAVPO (Q8VHC8) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) Length = 1007 Score = 55.1 bits (131), Expect(2) = 6e-10 Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Frame = +2 Query: 74 LDDQCEGLVIEGKYYLKIDPQGDGARWRRTFGQ-ELYSPLLLAFAEQDGGNWANSHVSS- 247 L + G + G++ L +D + A R + EL +P L+ A G ++ + H + Sbjct: 823 LQEPGSGGWVRGRHLLLLDTAREAAAEHRLLAEKELLAPQLV-LAPGQGPSYHHDHHEAV 881 Query: 248 ----FSAMDPTYSLPENVALLTLEELEDGSVLLRLAHLYEAGE--HKDLSALASVDLKRV 409 FS + LP +V LLTL ++LLRL H + GE ++LS ++DL+ + Sbjct: 882 PRKQFSGL--RRQLPPSVRLLTLARWGPDTLLLRLEHQFALGEDSSRNLSLPVTLDLQDL 939 Query: 410 FPDKKVGKIIETSLSANQERAAMEKKRLKW 499 F + ++ ET+L+ANQ RA+ RLKW Sbjct: 940 FSTFTITRLQETTLAANQLRAS--ASRLKW 967 Score = 27.3 bits (59), Expect(2) = 6e-10 Identities = 12/14 (85%), Positives = 12/14 (85%) Frame = +1 Query: 16 RLLNDDGRGVAEAL 57 RLL DDGRGV EAL Sbjct: 810 RLLKDDGRGVGEAL 823
>MA2B1_HUMAN (O00754) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) [Contains: Lysosomal alpha-mannosidase A peptide; Lysosomal alpha-mannosidase Length = 1010 Score = 49.7 bits (117), Expect(2) = 7e-08 Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 4/140 (2%) Frame = +2 Query: 92 GLVIEGKYYLKIDP-QGDGARWRRTFGQELYSP-LLLAFAEQDGGNWANSHVSSFSAMDP 265 G + G++ + +D Q A R QE+ +P ++LA N + FS + Sbjct: 834 GAWVRGRHLVLLDTAQAAAAGHRLLAEQEVLAPQVVLAPGGGAAYNLGAPPRTQFSGL-- 891 Query: 266 TYSLPENVALLTLEELEDGSVLLRLAHLYEAGEH--KDLSALASVDLKRVFPDKKVGKII 439 LP +V LLTL VLLRL H + GE ++LSA +++L+ +F + ++ Sbjct: 892 RRDLPPSVHLLTLASWGPEMVLLRLEHQFAVGEDSGRNLSAPVTLNLRDLFSTFTITRLQ 951 Query: 440 ETSLSANQERAAMEKKRLKW 499 ET+L ANQ R A RLKW Sbjct: 952 ETTLVANQLREA--ASRLKW 969 Score = 25.8 bits (55), Expect(2) = 7e-08 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = +1 Query: 16 RLLNDDGRGVAEAL 57 RLL DDGRGV+E L Sbjct: 815 RLLKDDGRGVSEPL 828
>MA2B1_MACFA (Q60HE9) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) Length = 1012 Score = 48.5 bits (114), Expect(2) = 1e-06 Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 4/140 (2%) Frame = +2 Query: 92 GLVIEGKYYLKIDP-QGDGARWRRTFGQELYSP-LLLAFAEQDGGNWANSHVSSFSAMDP 265 G + G++ + +D Q A R QE+ +P ++LA N + FS + Sbjct: 836 GAWVRGRHLVLLDTAQAAAAGHRLLAEQEVLAPQVVLAPGGGAAYNLGAPPRTQFSGL-- 893 Query: 266 TYSLPENVALLTLEELEDGSVLLRLAHLYEAGEH--KDLSALASVDLKRVFPDKKVGKII 439 LP +V LLTL +LLRL H + GE ++LSA +++L+ +F + ++ Sbjct: 894 RRELPPSVHLLTLASWGPEMLLLRLEHQFAVGEDSGRNLSAPVTLNLRDLFSTFTITRLQ 953 Query: 440 ETSLSANQERAAMEKKRLKW 499 ET+L ANQ R A RLKW Sbjct: 954 ETTLVANQLREA--ASRLKW 971 Score = 22.7 bits (47), Expect(2) = 1e-06 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 16 RLLNDDGRGVAEAL 57 RLL DD RGV+E L Sbjct: 817 RLLKDDERGVSEPL 830
>MA2B1_BOVIN (Q29451) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) [Contains: Lysosomal alpha-mannosidase A peptide; Lysosomal alpha-mannosidase Length = 999 Score = 48.1 bits (113), Expect(2) = 1e-06 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 3/145 (2%) Frame = +2 Query: 74 LDDQCEGLVIEGKYYLKIDPQGDGA-RWRRTFGQELYSPLLLAFAEQDGGNWANSHVSSF 250 L+ + GL + G++ + +D + A R R E+ +P ++ A+ G + Sbjct: 818 LNKEGSGLWVRGRHLVLLDKKETAAARHRLQAEMEVLAPQVV-LAQGGGARYRLEKAPRT 876 Query: 251 SAMDPTYSLPENVALLTLEELEDGSVLLRLAHLYEAGEH--KDLSALASVDLKRVFPDKK 424 LP +V LLTL ++LLRL H + GE ++LS+ ++DL +F Sbjct: 877 QFSGLRRELPPSVRLLTLARWGPETLLLRLEHQFAVGEDSGRNLSSPVTLDLTNLFSAFT 936 Query: 425 VGKIIETSLSANQERAAMEKKRLKW 499 + + ET+L+ANQ A RL+W Sbjct: 937 ITNLRETTLAANQLLA--YASRLQW 959 Score = 23.1 bits (48), Expect(2) = 1e-06 Identities = 10/14 (71%), Positives = 10/14 (71%) Frame = +1 Query: 16 RLLNDDGRGVAEAL 57 RLL DD RGV E L Sbjct: 805 RLLKDDARGVGEPL 818
>MA2B1_FELCA (O46432) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) Length = 1007 Score = 47.4 bits (111), Expect = 2e-05 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Frame = +2 Query: 275 LPENVALLTLEELEDGSVLLRLAHLYEAGEHK-DLSALASVDLKRVFPDKKVGKIIETSL 451 LP +V LLTL + ++LLRL H + GE +LS+ ++DL +F + + ET+L Sbjct: 894 LPPSVHLLTLARWDQKTLLLRLEHQFAVGEDSGNLSSPVTLDLTDLFSAFTITYLQETTL 953 Query: 452 SANQERAAMEKKRLKW 499 ANQ RA+ RLKW Sbjct: 954 VANQLRAS--ASRLKW 967
>MA2B1_MOUSE (O09159) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) Length = 1013 Score = 41.6 bits (96), Expect(2) = 2e-04 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 4/137 (2%) Frame = +2 Query: 101 IEGKYYLKIDPQGDGA-RWRRTFGQELYSP-LLLAFAEQDGGNWANSHVSSFSAMDPTYS 274 + G++ + + D A R R QE+ +P ++L+ + + + FS + Sbjct: 839 VRGRHLVLLSSVSDAAARHRLLAEQEVLAPQVVLSLGGSSPYHSRATPKTQFSGL--RQE 896 Query: 275 LPENVALLTLEELEDGSVLLRLAHLYEAGEHKD--LSALASVDLKRVFPDKKVGKIIETS 448 LP V LLTL +LLRL H + E D LS+ +++++ +F + + ET+ Sbjct: 897 LPPQVHLLTLARWGPKMLLLRLEHQFALKEDSDRNLSSPVTLNVQNLFQTFTINYLQETT 956 Query: 449 LSANQERAAMEKKRLKW 499 L+ANQ + RLKW Sbjct: 957 LAANQPLS--RASRLKW 971 Score = 21.9 bits (45), Expect(2) = 2e-04 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 16 RLLNDDGRGVAEAL 57 RLL DD RGV+E L Sbjct: 817 RLLVDDDRGVSEPL 830
>MA2B2_MOUSE (O54782) Epididymis-specific alpha-mannosidase precursor (EC| 3.2.1.24) (Mannosidase alpha class 2B member 2) Length = 1018 Score = 36.6 bits (83), Expect = 0.042 Identities = 20/28 (71%), Positives = 21/28 (75%) Frame = +2 Query: 326 VLLRLAHLYEAGEHKDLSALASVDLKRV 409 VLLRL HLYEAGE LS A+VDLK V Sbjct: 923 VLLRLRHLYEAGEDPVLSRPATVDLKVV 950
>MA2B2_PIG (Q28949) Epididymis-specific alpha-mannosidase precursor (EC| 3.2.1.24) (Mannosidase alpha class 2B member 2) (AMAN) Length = 995 Score = 36.6 bits (83), Expect = 0.042 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 3/62 (4%) Frame = +2 Query: 326 VLLRLAHLYEAGEHKDLSALASVDLKRVFPDKKVGKII---ETSLSANQERAAMEKKRLK 496 VLLRL HLYEAGEH+ LS +++L+ V + +G ++ E SL+ + ++ R Sbjct: 898 VLLRLHHLYEAGEHQALSRPVTLNLQSVL--RGLGSVVAVEERSLTGTWDVNSLH--RWS 953 Query: 497 WK 502 WK Sbjct: 954 WK 955
>RAG2_XENLA (Q91830) V(D)J recombination-activating protein 2 (RAG-2)| Length = 520 Score = 32.7 bits (73), Expect = 0.61 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Frame = +2 Query: 113 YYLKIDPQGDGAR--WRRTFGQELYSPLLLAFAEQDGGNWANSHVSSFSAMDPTYSLPEN 286 Y++K P D R W + EL P ++ F +DGG+W +S S Y N Sbjct: 408 YWIKCCPDCDMDRNTWEPFYSTELNKPSMI-FCSKDGGHWVHSQCMDLSETMLKYLSQNN 466 Query: 287 VALLTLEELE 316 + E +E Sbjct: 467 IKYFCNEHVE 476
>MA2B2_HUMAN (Q9Y2E5) Epididymis-specific alpha-mannosidase precursor (EC| 3.2.1.24) (Mannosidase alpha class 2B member 2) Length = 1009 Score = 31.6 bits (70), Expect = 1.4 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Frame = +2 Query: 326 VLLRLAHLYEAGEHKDLSALASVDLKRVFPDKKVGKII---ETSLSANQERAAMEKKRLK 496 VLLRL HLYE GE LS +V+L+ V + +G ++ E SL+ + + + R Sbjct: 913 VLLRLYHLYEVGEDPVLSQPVTVNLQAVL--QALGSVVAVEERSLTGTWDLSMLH--RWS 968 Query: 497 WKVAGP 514 W+ GP Sbjct: 969 WR-TGP 973
>GALT7_DROME (Q8MV48) N-acetylgalactosaminyltransferase 7 (EC 2.4.1.-)| (Protein-UDP acetylgalactosaminyltransferase 7) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 7) (pp-GaNTase 7) (dGalNAc-T2) Length = 591 Score = 30.8 bits (68), Expect = 2.3 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = +3 Query: 78 MINVKD*LLKENTISKLTHKVTGLGGVVHLVRNCTPLFFLRSQSR--MEATGRIHMF 242 +I V D KEN S+L V G+V ++RN +R++SR MEATG + +F Sbjct: 177 IILVDDFSDKENLRSQLDEYVLQFKGLVKVIRNKEREGLIRTRSRGAMEATGEVIVF 233
>MA2B2_PONPY (Q5RDJ3) Epididymis-specific alpha-mannosidase precursor (EC| 3.2.1.24) (Mannosidase alpha class 2B member 2) Length = 1009 Score = 30.8 bits (68), Expect = 2.3 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Frame = +2 Query: 326 VLLRLAHLYEAGEHKDLSALASVDLKRVFPDKKVGKII---ETSLSANQERAAMEKKRLK 496 VLLRL HLYE GE LS +V+L+ V + +G ++ E SL+ + + + R Sbjct: 913 VLLRLHHLYEVGEDPVLSQPVTVNLEAVL--QALGSVVAVEERSLTGTWDVSMLH--RWS 968 Query: 497 WK 502 W+ Sbjct: 969 WR 970
>PDR1_YEAST (P12383) Transcription factor PDR1 (Pleiotropic drug resistance| protein 1) Length = 1063 Score = 30.8 bits (68), Expect = 2.3 Identities = 19/47 (40%), Positives = 24/47 (51%) Frame = -1 Query: 344 EPTEGEHFHLQVPQA*ATRHFQEDCKLDPLQRKMKHVNSPSCLHPAL 204 EP + FHL V Q R FQE + ++MKH NS L+P L Sbjct: 869 EPVQKSGFHLTVSQMLKNRKFQEPLMSNEDNKQMKH-NSGKNLNPDL 914
>LEF_BACAN (P15917) Lethal factor precursor (EC 3.4.24.83) (LF) (Anthrax| lethal toxin endopeptidase component) Length = 809 Score = 30.8 bits (68), Expect = 2.3 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 14/80 (17%) Frame = +2 Query: 320 GSVLLRLAHLYEAGEHKDLSALASVDLKRVFPDKKVGKII--------ETSLSAN----- 460 GS L +LYE +L+A DL + K+ + I + S+S+N Sbjct: 461 GSTLYNKIYLYENMNINNLTATLGADLVDSTDNTKINRGIFNEFKKNFKYSISSNYMIVD 520 Query: 461 -QERAAMEKKRLKWKVAGPP 517 ER A++ +RLKW++ P Sbjct: 521 INERPALDNERLKWRIQLSP 540
>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)| Length = 2498 Score = 30.4 bits (67), Expect = 3.0 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = -3 Query: 417 SGNTLLRSTLARAERSLCSPASYR*ANRRRT 325 SG ++LRSTL A +S SP Y N RRT Sbjct: 1510 SGPSVLRSTLHEASKSQLSPGIYEDNNARRT 1540
>NCOR1_XENTR (Q4KKX4) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)| Length = 2494 Score = 30.4 bits (67), Expect = 3.0 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = -3 Query: 417 SGNTLLRSTLARAERSLCSPASYR*ANRRRT 325 SG ++LRSTL A +S SP Y N RRT Sbjct: 1513 SGPSVLRSTLHEASKSQLSPGVYEDNNARRT 1543
>ERYA3_SACER (Q03133) Erythronolide synthase, modules 5 and 6 (EC 2.3.1.94) (ORF| 3) (6-deoxyerythronolide B synthase III) (DEBS 3) Length = 3171 Score = 29.6 bits (65), Expect = 5.2 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +2 Query: 209 QDGGNWANSHVSSFSAMDPTYSLPENVALLTLEELEDG 322 + GG + +FSA + LPE VA++ L+ L DG Sbjct: 1701 RQGGLAVDGRCKAFSAEADGFGLPEGVAVVQLQRLSDG 1738
>MPPB_YEAST (P10507) Mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (PEP) Length = 462 Score = 29.3 bits (64), Expect = 6.8 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +2 Query: 113 YYLKIDPQGDGARWRRTFGQELYSPLLLAFAEQDGGNWANSHVS 244 Y++ + Q W R G SP LA A G+ ANS++S Sbjct: 282 YFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMS 325
>KPCD2_HUMAN (Q9BZL6) Serine/threonine-protein kinase D2 (EC 2.7.11.13)| (nPKC-D2) Length = 878 Score = 29.3 bits (64), Expect = 6.8 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Frame = -1 Query: 413 GIPS*GRHSP----ELRDPYALQPRIGEPTEGEHFHLQVPQA*ATRHFQEDCKLDPLQRK 246 G P G P EL+ P L P+I P G FH+Q+ TR F L P + Sbjct: 13 GSPGPGSPPPPGGLELQSPPPLLPQIPAPGSGVSFHIQIG---LTREF----VLLPAASE 65 Query: 245 MKHVNSPSC 219 + HV +C Sbjct: 66 LAHVKQLAC 74
>OAR2_LYMST (O01670) Octopamine receptor 2 (OA2)| Length = 578 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +1 Query: 151 VASYIWSGTVLPSSSCVRRAGWRQLGEFTCFIFLC 255 ++ + + TVLP S+ G+ GEFTC ++LC Sbjct: 125 ISDLLLAVTVLPISTVHDLLGYWVFGEFTCTLWLC 159
>PNKL_NPVAC (P41476) Putative bifunctional polynucleotide kinase/RNA ligase| [Includes: Polynucleotide kinase (EC 2.7.1.78) (PNK) (Polynucleotide 5'-hydroxy-kinase); RNA ligase (EC 6.5.1.3)] Length = 694 Score = 28.9 bits (63), Expect = 8.9 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 9/65 (13%) Frame = +2 Query: 335 RLAHLYEAGEHKDLSALAS---------VDLKRVFPDKKVGKIIETSLSANQERAAMEKK 487 +LA L GEH D AL VD + F ++ I+ + L+ NQ+R + Sbjct: 273 KLAQLVINGEHDDFLALFPHLKSVIKPYVDARNTFTNESTINIMVSGLTLNQQRFNELVQ 332 Query: 488 RLKWK 502 L WK Sbjct: 333 TLPWK 337
>NMT_CANAL (P30418) Glycylpeptide N-tetradecanoyltransferase (EC 2.3.1.97)| (Peptide N-myristoyltransferase) (Myristoyl-CoA:protein N-myristoyltransferase) (NMT) Length = 451 Score = 28.9 bits (63), Expect = 8.9 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 9/84 (10%) Frame = +2 Query: 161 TFGQELYSPLLLAFAEQDGGNWANSHVSSFSAMDP---------TYSLPENVALLTLEEL 313 T G L +PL + NW+ H FS + P +Y+LP N L L + Sbjct: 211 TGGSILPTPLTTCRYQHRPINWSKLHDVGFSHLPPNQTKSSMVASYTLPNNPKLKGLRPM 270 Query: 314 EDGSVLLRLAHLYEAGEHKDLSAL 385 V L+ LY+ E D+ L Sbjct: 271 TGKDVSTVLSLLYKYQERFDIVQL 294
>CDC12_SCHPO (Q10059) Cell division control protein 12| Length = 1841 Score = 28.9 bits (63), Expect = 8.9 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Frame = +2 Query: 221 NWANSHVSSFSAMDPTYSLPE--NVALLTLEELEDGSVLLRLAHLYEAGEHKDLSALASV 394 N A+S S+ + ++ S E N ++ EELE G L L L E+G H+ + Sbjct: 467 NSASSSPSNIAFLEYCTSTMEFINQLIVACEELEQGFDLDILDSLRESGIHE------VI 520 Query: 395 DLKRVFPDKKVGKIIETSLSANQER 469 L R FPD+++ K + S + R Sbjct: 521 QLLRNFPDQQLEKQLNIYESEEERR 545 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,133,360 Number of Sequences: 219361 Number of extensions: 1524317 Number of successful extensions: 4074 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3984 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4069 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
