Clone Name | bags8p06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK061950.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E10, full insert sequence Length = 1759 Score = 422 bits (213), Expect = e-115 Identities = 442/516 (85%), Gaps = 2/516 (0%) Strand = Plus / Plus Query: 1 taatgctacacaggnaggctactcaatgatgatggtcgtggtgttgcggaagcactagna 60 |||||||||||||| || ||||| |||||||||||||||||||||| || ||| || | Sbjct: 896 taatgctacacagg-agactacttcatgatgatggtcgtggtgttgcagaggcatta-aa 953 Query: 61 tgaaaaagtctgtttggatgatcaatgtgaaggactagttattgaaggaaaatactatct 120 ||||| | |||||| ||| ||||||||||||||||||||||| ||||||| || ||||| Sbjct: 954 tgaaacaacctgttttgataatcaatgtgaaggactagttattcaaggaaagtattatct 1013 Query: 121 caaaattgacccacaaggtgacggggctaggtggcgtcgtacatttggtcaggaactgta 180 ||||||||| ||||||||||| || ||||||||||| || |||||||| |||||| | || Sbjct: 1014 caaaattgatccacaaggtgaaggagctaggtggcggcggacatttggccaggaaatata 1073 Query: 181 ctcccctcttcttcttgcgttcgcagagcaggatggaggcaactgggcgaattcacatgt 240 ||||||||||||| |||| || ||||||||||||||||| || |||| ||||||||| || Sbjct: 1074 ctcccctcttcttattgcttttgcagagcaggatggaggtaattgggtgaattcacacgt 1133 Query: 241 ttcatctttctctgcaatggatccaacttacagtcttcctgaaaatgtcgcgttgcttac 300 | || ||||||||||||||||| | ||||| | ||||| ||||| || |||||||| Sbjct: 1134 tacaaaattctctgcaatggatccggcctacagcttgcctgataatgttgcattgcttac 1193 Query: 301 gcttgaggaacttgaagatggaagtgttctccttcggttggctcacctatacgaggctgg 360 ||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| Sbjct: 1194 tcttcaggaacttgaagacggaactgttcttcttcggttggctcacctatacgaggctgg 1253 Query: 361 agagcataaggatctctcagctctggcgagtgtcgacctcaagagggtattcccagataa 420 |||||| |||||||| |||||||| || || |||||||| ||||| ||||| ||||| || Sbjct: 1254 agagcacaaggatctttcagctctagctagcgtcgacctgaagagagtatttccagacaa 1313 Query: 421 aaaggtcggcaagataattgaaacaagcctatcagcgaaccaagagcgcgccgccatgga 480 ||| | | |||||| |||| ||||||||||||||||||||||| || | |||||||| Sbjct: 1314 gaagattgtcaagattgttgagacaagcctatcagcgaaccaagaacgttcagccatgga 1373 Query: 481 gaagaagaggctgaaatggaaggtggcagggcctcc 516 ||| ||||||||||| |||||||||| ||| ||||| Sbjct: 1374 gaaaaagaggctgaagtggaaggtggaaggccctcc 1409
>dbj|AK120149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029J19, full insert sequence Length = 2926 Score = 422 bits (213), Expect = e-115 Identities = 442/516 (85%), Gaps = 2/516 (0%) Strand = Plus / Plus Query: 1 taatgctacacaggnaggctactcaatgatgatggtcgtggtgttgcggaagcactagna 60 |||||||||||||| || ||||| |||||||||||||||||||||| || ||| || | Sbjct: 2077 taatgctacacagg-agactacttcatgatgatggtcgtggtgttgcagaggcatta-aa 2134 Query: 61 tgaaaaagtctgtttggatgatcaatgtgaaggactagttattgaaggaaaatactatct 120 ||||| | |||||| ||| ||||||||||||||||||||||| ||||||| || ||||| Sbjct: 2135 tgaaacaacctgttttgataatcaatgtgaaggactagttattcaaggaaagtattatct 2194 Query: 121 caaaattgacccacaaggtgacggggctaggtggcgtcgtacatttggtcaggaactgta 180 ||||||||| ||||||||||| || ||||||||||| || |||||||| |||||| | || Sbjct: 2195 caaaattgatccacaaggtgaaggagctaggtggcggcggacatttggccaggaaatata 2254 Query: 181 ctcccctcttcttcttgcgttcgcagagcaggatggaggcaactgggcgaattcacatgt 240 ||||||||||||| |||| || ||||||||||||||||| || |||| ||||||||| || Sbjct: 2255 ctcccctcttcttattgcttttgcagagcaggatggaggtaattgggtgaattcacacgt 2314 Query: 241 ttcatctttctctgcaatggatccaacttacagtcttcctgaaaatgtcgcgttgcttac 300 | || ||||||||||||||||| | ||||| | ||||| ||||| || |||||||| Sbjct: 2315 tacaaaattctctgcaatggatccggcctacagcttgcctgataatgttgcattgcttac 2374 Query: 301 gcttgaggaacttgaagatggaagtgttctccttcggttggctcacctatacgaggctgg 360 ||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| Sbjct: 2375 tcttcaggaacttgaagacggaactgttcttcttcggttggctcacctatacgaggctgg 2434 Query: 361 agagcataaggatctctcagctctggcgagtgtcgacctcaagagggtattcccagataa 420 |||||| |||||||| |||||||| || || |||||||| ||||| ||||| ||||| || Sbjct: 2435 agagcacaaggatctttcagctctagctagcgtcgacctgaagagagtatttccagacaa 2494 Query: 421 aaaggtcggcaagataattgaaacaagcctatcagcgaaccaagagcgcgccgccatgga 480 ||| | | |||||| |||| ||||||||||||||||||||||| || | |||||||| Sbjct: 2495 gaagattgtcaagattgttgagacaagcctatcagcgaaccaagaacgttcagccatgga 2554 Query: 481 gaagaagaggctgaaatggaaggtggcagggcctcc 516 ||| ||||||||||| |||||||||| ||| ||||| Sbjct: 2555 gaaaaagaggctgaagtggaaggtggaaggccctcc 2590
>dbj|AK102653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101E19, full insert sequence Length = 2123 Score = 422 bits (213), Expect = e-115 Identities = 442/516 (85%), Gaps = 2/516 (0%) Strand = Plus / Plus Query: 1 taatgctacacaggnaggctactcaatgatgatggtcgtggtgttgcggaagcactagna 60 |||||||||||||| || ||||| |||||||||||||||||||||| || ||| || | Sbjct: 1259 taatgctacacagg-agactacttcatgatgatggtcgtggtgttgcagaggcatta-aa 1316 Query: 61 tgaaaaagtctgtttggatgatcaatgtgaaggactagttattgaaggaaaatactatct 120 ||||| | |||||| ||| ||||||||||||||||||||||| ||||||| || ||||| Sbjct: 1317 tgaaacaacctgttttgataatcaatgtgaaggactagttattcaaggaaagtattatct 1376 Query: 121 caaaattgacccacaaggtgacggggctaggtggcgtcgtacatttggtcaggaactgta 180 ||||||||| ||||||||||| || ||||||||||| || |||||||| |||||| | || Sbjct: 1377 caaaattgatccacaaggtgaaggagctaggtggcggcggacatttggccaggaaatata 1436 Query: 181 ctcccctcttcttcttgcgttcgcagagcaggatggaggcaactgggcgaattcacatgt 240 ||||||||||||| |||| || ||||||||||||||||| || |||| ||||||||| || Sbjct: 1437 ctcccctcttcttattgcttttgcagagcaggatggaggtaattgggtgaattcacacgt 1496 Query: 241 ttcatctttctctgcaatggatccaacttacagtcttcctgaaaatgtcgcgttgcttac 300 | || ||||||||||||||||| | ||||| | ||||| ||||| || |||||||| Sbjct: 1497 tacaaaattctctgcaatggatccggcctacagcttgcctgataatgttgcattgcttac 1556 Query: 301 gcttgaggaacttgaagatggaagtgttctccttcggttggctcacctatacgaggctgg 360 ||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| Sbjct: 1557 tcttcaggaacttgaagacggaactgttcttcttcggttggctcacctatacgaggctgg 1616 Query: 361 agagcataaggatctctcagctctggcgagtgtcgacctcaagagggtattcccagataa 420 |||||| |||||||| |||||||| || || |||||||| ||||| ||||| ||||| || Sbjct: 1617 agagcacaaggatctttcagctctagctagcgtcgacctgaagagagtatttccagacaa 1676 Query: 421 aaaggtcggcaagataattgaaacaagcctatcagcgaaccaagagcgcgccgccatgga 480 ||| | | |||||| |||| ||||||||||||||||||||||| || | |||||||| Sbjct: 1677 gaagattgtcaagattgttgagacaagcctatcagcgaaccaagaacgttcagccatgga 1736 Query: 481 gaagaagaggctgaaatggaaggtggcagggcctcc 516 ||| ||||||||||| |||||||||| ||| ||||| Sbjct: 1737 gaaaaagaggctgaagtggaaggtggaaggccctcc 1772
>dbj|AK098929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020C01, full insert sequence Length = 3367 Score = 422 bits (213), Expect = e-115 Identities = 442/516 (85%), Gaps = 2/516 (0%) Strand = Plus / Plus Query: 1 taatgctacacaggnaggctactcaatgatgatggtcgtggtgttgcggaagcactagna 60 |||||||||||||| || ||||| |||||||||||||||||||||| || ||| || | Sbjct: 2503 taatgctacacagg-agactacttcatgatgatggtcgtggtgttgcagaggcatta-aa 2560 Query: 61 tgaaaaagtctgtttggatgatcaatgtgaaggactagttattgaaggaaaatactatct 120 ||||| | |||||| ||| ||||||||||||||||||||||| ||||||| || ||||| Sbjct: 2561 tgaaacaacctgttttgataatcaatgtgaaggactagttattcaaggaaagtattatct 2620 Query: 121 caaaattgacccacaaggtgacggggctaggtggcgtcgtacatttggtcaggaactgta 180 ||||||||| ||||||||||| || ||||||||||| || |||||||| |||||| | || Sbjct: 2621 caaaattgatccacaaggtgaaggagctaggtggcggcggacatttggccaggaaatata 2680 Query: 181 ctcccctcttcttcttgcgttcgcagagcaggatggaggcaactgggcgaattcacatgt 240 ||||||||||||| |||| || ||||||||||||||||| || |||| ||||||||| || Sbjct: 2681 ctcccctcttcttattgcttttgcagagcaggatggaggtaattgggtgaattcacacgt 2740 Query: 241 ttcatctttctctgcaatggatccaacttacagtcttcctgaaaatgtcgcgttgcttac 300 | || ||||||||||||||||| | ||||| | ||||| ||||| || |||||||| Sbjct: 2741 tacaaaattctctgcaatggatccggcctacagcttgcctgataatgttgcattgcttac 2800 Query: 301 gcttgaggaacttgaagatggaagtgttctccttcggttggctcacctatacgaggctgg 360 ||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| Sbjct: 2801 tcttcaggaacttgaagacggaactgttcttcttcggttggctcacctatacgaggctgg 2860 Query: 361 agagcataaggatctctcagctctggcgagtgtcgacctcaagagggtattcccagataa 420 |||||| |||||||| |||||||| || || |||||||| ||||| ||||| ||||| || Sbjct: 2861 agagcacaaggatctttcagctctagctagcgtcgacctgaagagagtatttccagacaa 2920 Query: 421 aaaggtcggcaagataattgaaacaagcctatcagcgaaccaagagcgcgccgccatgga 480 ||| | | |||||| |||| ||||||||||||||||||||||| || | |||||||| Sbjct: 2921 gaagattgtcaagattgttgagacaagcctatcagcgaaccaagaacgttcagccatgga 2980 Query: 481 gaagaagaggctgaaatggaaggtggcagggcctcc 516 ||| ||||||||||| |||||||||| ||| ||||| Sbjct: 2981 gaaaaagaggctgaagtggaaggtggaaggccctcc 3016
>dbj|AK068415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151H23, full insert sequence Length = 3413 Score = 422 bits (213), Expect = e-115 Identities = 442/516 (85%), Gaps = 2/516 (0%) Strand = Plus / Plus Query: 1 taatgctacacaggnaggctactcaatgatgatggtcgtggtgttgcggaagcactagna 60 |||||||||||||| || ||||| |||||||||||||||||||||| || ||| || | Sbjct: 2549 taatgctacacagg-agactacttcatgatgatggtcgtggtgttgcagaggcatta-aa 2606 Query: 61 tgaaaaagtctgtttggatgatcaatgtgaaggactagttattgaaggaaaatactatct 120 ||||| | |||||| ||| ||||||||||||||||||||||| ||||||| || ||||| Sbjct: 2607 tgaaacaacctgttttgataatcaatgtgaaggactagttattcaaggaaagtattatct 2666 Query: 121 caaaattgacccacaaggtgacggggctaggtggcgtcgtacatttggtcaggaactgta 180 ||||||||| ||||||||||| || ||||||||||| || |||||||| |||||| | || Sbjct: 2667 caaaattgatccacaaggtgaaggagctaggtggcggcggacatttggccaggaaatata 2726 Query: 181 ctcccctcttcttcttgcgttcgcagagcaggatggaggcaactgggcgaattcacatgt 240 ||||||||||||| |||| || ||||||||||||||||| || |||| ||||||||| || Sbjct: 2727 ctcccctcttcttattgcttttgcagagcaggatggaggtaattgggtgaattcacacgt 2786 Query: 241 ttcatctttctctgcaatggatccaacttacagtcttcctgaaaatgtcgcgttgcttac 300 | || ||||||||||||||||| | ||||| | ||||| ||||| || |||||||| Sbjct: 2787 tacaaaattctctgcaatggatccggcctacagcttgcctgataatgttgcattgcttac 2846 Query: 301 gcttgaggaacttgaagatggaagtgttctccttcggttggctcacctatacgaggctgg 360 ||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| Sbjct: 2847 tcttcaggaacttgaagacggaactgttcttcttcggttggctcacctatacgaggctgg 2906 Query: 361 agagcataaggatctctcagctctggcgagtgtcgacctcaagagggtattcccagataa 420 |||||| |||||||| |||||||| || || |||||||| ||||| ||||| ||||| || Sbjct: 2907 agagcacaaggatctttcagctctagctagcgtcgacctgaagagagtatttccagacaa 2966 Query: 421 aaaggtcggcaagataattgaaacaagcctatcagcgaaccaagagcgcgccgccatgga 480 ||| | | |||||| |||| ||||||||||||||||||||||| || | |||||||| Sbjct: 2967 gaagattgtcaagattgttgagacaagcctatcagcgaaccaagaacgttcagccatgga 3026 Query: 481 gaagaagaggctgaaatggaaggtggcagggcctcc 516 ||| ||||||||||| |||||||||| ||| ||||| Sbjct: 3027 gaaaaagaggctgaagtggaaggtggaaggccctcc 3062
>gb|AY105839.1| Zea mays PCO061004 mRNA sequence Length = 1624 Score = 325 bits (164), Expect = 8e-86 Identities = 420/503 (83%), Gaps = 2/503 (0%) Strand = Plus / Plus Query: 1 taatgctacacaggnaggctactcaatgatgatggtcgtggtgttgcggaagcactagna 60 |||||||||||||| ||||||||| |||||||||| || || || || || ||| | Sbjct: 702 taatgctacacagg-aggctactccatgatgatgggaaaggcgtcgccgaggcgcta-aa 759 Query: 61 tgaaaaagtctgtttggatgatcaatgtgaaggactagttattgaaggaaaatactatct 120 ||||| ||||||| | ||| | |||||||||||||| |||| |||||||||||||| | Sbjct: 760 tgaaacagtctgtctcgataagcaatgtgaaggactcattatacaaggaaaatactatgt 819 Query: 121 caaaattgacccacaaggtgacggggctaggtggcgtcgtacatttggtcaggaactgta 180 |||||| ||||||||||| || || ||| |||||||||| |||||||| |||||| | || Sbjct: 820 caaaatagacccacaaggagaaggagctcggtggcgtcggacatttggccaggaaatata 879 Query: 181 ctcccctcttcttcttgcgttcgcagagcaggatggaggcaactgggcgaattcacatgt 240 ||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct: 880 ctcccctctccttcttgctttcacagagcaggatggaggcaactgggcgaattcacatgt 939 Query: 241 ttcatctttctctgcaatggatccaacttacagtcttcctgaaaatgtcgcgttgcttac 300 | || |||||||| |||||| |||||||||| | ||||| ||||| || ||||||| Sbjct: 940 tgcaaaattctctgcgatggattcaacttacagcttgcctgataatgttgcaatgcttac 999 Query: 301 gcttgaggaacttgaagatggaagtgttctccttcggttggctcacctatacgaggctgg 360 ||| |||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| || Sbjct: 1000 ccttcaggagcttgaagatggaagtgttctccttcggtttgctcatctatatgaggccgg 1059 Query: 361 agagcataaggatctctcagctctggcgagtgtcgacctcaagagggtattcccagataa 420 ||| | |||||||| || || | |||||| ||||||||||||| || ||||| || || Sbjct: 1060 ggaggacaaggatctttcgtctttagcgagtatcgacctcaagagagtgttcccggagaa 1119 Query: 421 aaaggtcggcaagataattgaaacaagcctatcagcgaaccaagagcgcgccgccatgga 480 ||| | |||||| | || || |||||| |||| || |||||||| ||||| |||||||| Sbjct: 1120 gaagattggcaaggtcatcgagacaagcttatcggcaaaccaagaacgcgcagccatgga 1179 Query: 481 gaagaagaggctgaaatggaagg 503 ||||||| | |||||||||||| Sbjct: 1180 gaagaagcgtttgaaatggaagg 1202
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 105 aaggaaaatactatctcaaaattgacccacaaggtgacggggctaggtggcgtcgtacat 164 ||||||| || |||||||||||||| ||||||||||| || ||||||||||| || |||| Sbjct: 135615 aaggaaagtattatctcaaaattgatccacaaggtgaaggagctaggtggcggcggacat 135674 Query: 165 ttggtcaggaactgtactcccctcttcttcttgcgttcgcagagcagg 212 |||| |||||| | ||||||||||||||| |||| || |||||||||| Sbjct: 135675 ttggccaggaaatatactcccctcttcttattgcttttgcagagcagg 135722 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 438 ttgaaacaagcctatcagcgaaccaagagcgcgccgccatggagaagaagaggctgaaat 497 |||| ||||||||||||||||||||||| || | ||||||||||| ||||||||||| | Sbjct: 136613 ttgagacaagcctatcagcgaaccaagaacgttcagccatggagaaaaagaggctgaagt 136672 Query: 498 ggaaggtggcagggcctcc 516 ||||||||| ||| ||||| Sbjct: 136673 ggaaggtggaaggccctcc 136691 Score = 77.8 bits (39), Expect = 3e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 306 aggaacttgaagatggaagtgttctccttcggttggctcacctatacgagg 356 ||||||||||||| |||| |||||| ||||||||||||||||||||||||| Sbjct: 136303 aggaacttgaagacggaactgttcttcttcggttggctcacctatacgagg 136353 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 354 aggctggagagcataaggatctctcagctctggcgagtgtcgacctcaagagggtattcc 413 ||||||||||||| |||||||| |||||||| || || |||||||| ||||| ||||| | Sbjct: 136438 aggctggagagcacaaggatctttcagctctagctagcgtcgacctgaagagagtatttc 136497 Query: 414 cagataaaaaggt 426 |||| || ||||| Sbjct: 136498 cagacaagaaggt 136510 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/75 (86%), Gaps = 1/75 (1%) Strand = Plus / Plus Query: 26 atgatgatggtcgtggtgttgcggaagcactagnatgaaaaagtctgtttggatgatcaa 85 |||||||||||||||||||||| || ||| || |||||| | |||||| ||| ||||| Sbjct: 135197 atgatgatggtcgtggtgttgcagaggcatta-aatgaaacaacctgttttgataatcaa 135255 Query: 86 tgtgaaggactagtt 100 ||||||||||||||| Sbjct: 135256 tgtgaaggactagtt 135270 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 209 caggatggaggcaactgggcgaattcacatgtttcatctttctctgcaatggatcc 264 ||||||||||| || |||| ||||||||| ||| || ||||||||||||||||| Sbjct: 135798 caggatggaggtaattgggtgaattcacacgttacaaaattctctgcaatggatcc 135853
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 105 aaggaaaatactatctcaaaattgacccacaaggtgacggggctaggtggcgtcgtacat 164 ||||||| || |||||||||||||| ||||||||||| || ||||||||||| || |||| Sbjct: 18400250 aaggaaagtattatctcaaaattgatccacaaggtgaaggagctaggtggcggcggacat 18400309 Query: 165 ttggtcaggaactgtactcccctcttcttcttgcgttcgcagagcagg 212 |||| |||||| | ||||||||||||||| |||| || |||||||||| Sbjct: 18400310 ttggccaggaaatatactcccctcttcttattgcttttgcagagcagg 18400357 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 438 ttgaaacaagcctatcagcgaaccaagagcgcgccgccatggagaagaagaggctgaaat 497 |||| ||||||||||||||||||||||| || | ||||||||||| ||||||||||| | Sbjct: 18401248 ttgagacaagcctatcagcgaaccaagaacgttcagccatggagaaaaagaggctgaagt 18401307 Query: 498 ggaaggtggcagggcctcc 516 ||||||||| ||| ||||| Sbjct: 18401308 ggaaggtggaaggccctcc 18401326 Score = 77.8 bits (39), Expect = 3e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 306 aggaacttgaagatggaagtgttctccttcggttggctcacctatacgagg 356 ||||||||||||| |||| |||||| ||||||||||||||||||||||||| Sbjct: 18400938 aggaacttgaagacggaactgttcttcttcggttggctcacctatacgagg 18400988 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 354 aggctggagagcataaggatctctcagctctggcgagtgtcgacctcaagagggtattcc 413 ||||||||||||| |||||||| |||||||| || || |||||||| ||||| ||||| | Sbjct: 18401073 aggctggagagcacaaggatctttcagctctagctagcgtcgacctgaagagagtatttc 18401132 Query: 414 cagataaaaaggt 426 |||| || ||||| Sbjct: 18401133 cagacaagaaggt 18401145 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/75 (86%), Gaps = 1/75 (1%) Strand = Plus / Plus Query: 26 atgatgatggtcgtggtgttgcggaagcactagnatgaaaaagtctgtttggatgatcaa 85 |||||||||||||||||||||| || ||| || |||||| | |||||| ||| ||||| Sbjct: 18399832 atgatgatggtcgtggtgttgcagaggcatta-aatgaaacaacctgttttgataatcaa 18399890 Query: 86 tgtgaaggactagtt 100 ||||||||||||||| Sbjct: 18399891 tgtgaaggactagtt 18399905 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 209 caggatggaggcaactgggcgaattcacatgtttcatctttctctgcaatggatcc 264 ||||||||||| || |||| ||||||||| ||| || ||||||||||||||||| Sbjct: 18400433 caggatggaggtaattgggtgaattcacacgttacaaaattctctgcaatggatcc 18400488
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 105 aaggaaaatactatctcaaaattgacccacaaggtgacggggctaggtggcgtcgtacat 164 ||||||| || |||||||||||||| ||||||||||| || ||||||||||| || |||| Sbjct: 18559651 aaggaaagtattatctcaaaattgatccacaaggtgaaggagctaggtggcggcggacat 18559710 Query: 165 ttggtcaggaactgtactcccctcttcttcttgcgttcgcagagcagg 212 |||| |||||| | ||||||||||||||| |||| || |||||||||| Sbjct: 18559711 ttggccaggaaatatactcccctcttcttattgcttttgcagagcagg 18559758 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 438 ttgaaacaagcctatcagcgaaccaagagcgcgccgccatggagaagaagaggctgaaat 497 |||| ||||||||||||||||||||||| || | ||||||||||| ||||||||||| | Sbjct: 18560649 ttgagacaagcctatcagcgaaccaagaacgttcagccatggagaaaaagaggctgaagt 18560708 Query: 498 ggaaggtggcagggcctcc 516 ||||||||| ||| ||||| Sbjct: 18560709 ggaaggtggaaggccctcc 18560727 Score = 77.8 bits (39), Expect = 3e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 306 aggaacttgaagatggaagtgttctccttcggttggctcacctatacgagg 356 ||||||||||||| |||| |||||| ||||||||||||||||||||||||| Sbjct: 18560339 aggaacttgaagacggaactgttcttcttcggttggctcacctatacgagg 18560389 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 354 aggctggagagcataaggatctctcagctctggcgagtgtcgacctcaagagggtattcc 413 ||||||||||||| |||||||| |||||||| || || |||||||| ||||| ||||| | Sbjct: 18560474 aggctggagagcacaaggatctttcagctctagctagcgtcgacctgaagagagtatttc 18560533 Query: 414 cagataaaaaggt 426 |||| || ||||| Sbjct: 18560534 cagacaagaaggt 18560546 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/75 (86%), Gaps = 1/75 (1%) Strand = Plus / Plus Query: 26 atgatgatggtcgtggtgttgcggaagcactagnatgaaaaagtctgtttggatgatcaa 85 |||||||||||||||||||||| || ||| || |||||| | |||||| ||| ||||| Sbjct: 18559233 atgatgatggtcgtggtgttgcagaggcatta-aatgaaacaacctgttttgataatcaa 18559291 Query: 86 tgtgaaggactagtt 100 ||||||||||||||| Sbjct: 18559292 tgtgaaggactagtt 18559306 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 209 caggatggaggcaactgggcgaattcacatgtttcatctttctctgcaatggatcc 264 ||||||||||| || |||| ||||||||| ||| || ||||||||||||||||| Sbjct: 18559834 caggatggaggtaattgggtgaattcacacgttacaaaattctctgcaatggatcc 18559889
>ref|XM_604879.2| PREDICTED: Bos taurus similar to Olfactory receptor 7G1 (Olfactory receptor 19-15) (OR19-15) (LOC526508), mRNA Length = 936 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 475 catggagaagaagaggctgaaatggaagg 503 |||||| ||||||||||||||| |||||| Sbjct: 102 catggacaagaagaggctgaaaaggaagg 74
>gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, complete sequence Length = 224996 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 gaagatggaagtgttctcctt 334 ||||||||||||||||||||| Sbjct: 132864 gaagatggaagtgttctcctt 132844
>gb|AC160984.3| Mus musculus BAC clone RP23-260C12 from chromosome 14, complete sequence Length = 206110 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 aaatggaaggtggcagggcct 514 ||||||||||||||||||||| Sbjct: 128227 aaatggaaggtggcagggcct 128207
>gb|AC093545.1| Homo sapiens chromosome X clone RP5-1015P16A, complete sequence Length = 174725 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 479 gagaagaagaggctgaaatgg 499 ||||||||||||||||||||| Sbjct: 82559 gagaagaagaggctgaaatgg 82539
>gb|AC096716.3| Homo sapiens BAC clone RP11-8L2 from 4, complete sequence Length = 145634 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 473 gccatggagaagaagaggctgaaat 497 |||||||| |||||||||||||||| Sbjct: 78494 gccatggaaaagaagaggctgaaat 78470
>gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, complete sequence Length = 202381 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 486 agaggctgaaatggaaggtgg 506 ||||||||||||||||||||| Sbjct: 186266 agaggctgaaatggaaggtgg 186246
>gb|AC154333.2| Mus musculus BAC clone RP24-496M21 from 14, complete sequence Length = 163565 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 494 aaatggaaggtggcagggcct 514 ||||||||||||||||||||| Sbjct: 145773 aaatggaaggtggcagggcct 145793
>gb|AC007486.1|AC007486 Homo sapiens clone DJ1015P16A, complete sequence Length = 174725 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 479 gagaagaagaggctgaaatgg 499 ||||||||||||||||||||| Sbjct: 82559 gagaagaagaggctgaaatgg 82539
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 tcgcagagcaggatggaggc 220 |||||||||||||||||||| Sbjct: 107913 tcgcagagcaggatggaggc 107932
>ref|XM_608267.2| PREDICTED: Bos taurus hypothetical LOC529808 (LOC529808), mRNA Length = 1779 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 ccgccatggagaagaagagg 490 |||||||||||||||||||| Sbjct: 637 ccgccatggagaagaagagg 618
>gb|AC160458.4| Mus musculus chromosome 5, clone RP23-14C20, complete sequence Length = 253338 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 gaaaatactatctcaaaattgacc 131 |||||||||||||||||| ||||| Sbjct: 36351 gaaaatactatctcaaaactgacc 36374
>gb|AC154396.11| Mus musculus chromosome 3, clone RP24-254D5, complete sequence Length = 153799 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 catgtttcatctttctctgc 255 |||||||||||||||||||| Sbjct: 26117 catgtttcatctttctctgc 26136
>gb|AC103615.8| Mus musculus chromosome 5, clone RP24-174D16, complete sequence Length = 201693 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 gaaaatactatctcaaaattgacc 131 |||||||||||||||||| ||||| Sbjct: 97611 gaaaatactatctcaaaactgacc 97588
>gb|AC101889.6| Mus musculus chromosome 3, clone RP23-465M13, complete sequence Length = 186900 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 catgtttcatctttctctgc 255 |||||||||||||||||||| Sbjct: 20573 catgtttcatctttctctgc 20554
>emb|AL442089.1|HSM802822 Homo sapiens mRNA; cDNA DKFZp761E2216 (from clone DKFZp761E2216) Length = 3780 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 gcagagcaggatggaggcaa 222 |||||||||||||||||||| Sbjct: 186 gcagagcaggatggaggcaa 167
>gb|AC010973.6| Homo sapiens BAC clone RP11-148K1 from 7, complete sequence Length = 222605 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 gcagagcaggatggaggcaa 222 |||||||||||||||||||| Sbjct: 65942 gcagagcaggatggaggcaa 65961
>gb|AC080094.5| Homo sapiens BAC clone RP11-1007E2 from 2, complete sequence Length = 134001 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 atggagaagaagaggctgaa 495 |||||||||||||||||||| Sbjct: 17281 atggagaagaagaggctgaa 17262
>gb|AC134903.4| Mus musculus BAC clone RP23-329A21 from chromosome 5, complete sequence Length = 198368 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gagcataaggatctctcagc 381 |||||||||||||||||||| Sbjct: 64320 gagcataaggatctctcagc 64301
>gb|AC133097.3| Mus musculus BAC clone RP23-287O2 from 1, complete sequence Length = 199276 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 tggagaagaagaggctgaaa 496 |||||||||||||||||||| Sbjct: 75885 tggagaagaagaggctgaaa 75866
>gb|AC160723.2| Mus musculus BAC clone RP24-499G15 from chromosome 5, complete sequence Length = 173212 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gagcataaggatctctcagc 381 |||||||||||||||||||| Sbjct: 163140 gagcataaggatctctcagc 163159 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,772,828 Number of Sequences: 3902068 Number of extensions: 4772828 Number of successful extensions: 91157 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91025 Number of HSP's gapped (non-prelim): 119 length of query: 518 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 495 effective length of database: 17,143,297,704 effective search space: 8485932363480 effective search space used: 8485932363480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)