ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 454 e-124
2dbj|AK066680.1| Oryza sativa (japonica cultivar-group) cDNA clon... 454 e-124
3dbj|AK062235.1| Oryza sativa (japonica cultivar-group) cDNA clon... 454 e-124
4ref|XM_464306.1| Oryza sativa (japonica cultivar-group), mRNA 448 e-122
5gb|AY105805.1| Zea mays PCO075459 mRNA sequence 343 4e-91
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 240 5e-60
7dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic D... 240 5e-60
8emb|Z49263.1|PSCYTP450 P.sativum mRNA for cytochrome P450 68 4e-08
9ref|NM_117600.3| Arabidopsis thaliana CYP97B3; heme binding / ir... 44 0.55
10gb|AC123693.13| Mus musculus chromosome 3, clone RP23-326F23, co... 44 0.55
11gb|AY062675.1| Arabidopsis thaliana cytochrome P450 (Z97337.39) ... 44 0.55
12emb|BX827420.1|CNS0A4N0 Arabidopsis thaliana Full-length cDNA Co... 44 0.55
13dbj|AB192877.1| Human enterovirus 90 genomic RNA, complete genome 44 0.55
14gb|BT002582.1| Arabidopsis thaliana cytochrome P450 (At4g15110) ... 44 0.55
15gb|AC159002.2| Mus musculus BAC clone RP23-203D7 from chromosome... 42 2.2
16gb|AC163027.5| Mus musculus chromosome 5, clone RP23-396H22, com... 42 2.2
17emb|AL020989.2|HS192P9 Human DNA sequence from clone RP1-192P9 o... 42 2.2
18gb|AC097105.10| Homo sapiens 3 BAC RP11-119P22 (Roswell Park Can... 42 2.2
19gb|AC093830.3| Homo sapiens BAC clone RP11-401G24 from 4, comple... 42 2.2
20gb|AC118598.8| Mus musculus chromosome 5, clone RP23-446M13, com... 42 2.2
21gb|AC174678.2| Mus musculus BAC clone RP23-11O22 from chromosome... 42 2.2
22gb|AC151060.4| Bos taurus BAC CH240-293H4 (Children's Hospital ... 40 8.5
23gb|AC124535.4| Mus musculus BAC clone RP23-331C24 from chromosom... 40 8.5
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.5
25gb|AC165311.3| Mus musculus chromosome 18, clone RP23-352F3, com... 40 8.5
26gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genom... 40 8.5
27emb|Z48717.1|CET10B9 Caenorhabditis elegans Cosmid T10B9, comple... 40 8.5
28emb|AL161630.12| Human DNA sequence from clone RP11-500B12 on ch... 40 8.5
29emb|CR942205.4| Human DNA sequence from clone RP11-948M1 on chro... 40 8.5
30emb|Z97337.2|ATFCA2 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 8.5
31gb|AC134698.10| Homo sapiens chromosome 8, clone RP11-359P18, co... 40 8.5
32gb|AC106760.2| Homo sapiens chromosome 5 clone RP11-215G15, comp... 40 8.5
33dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
34gb|AF230636.7| Homo sapiens chromosome 8 clone RP4-801G19 map ce... 40 8.5
35gb|AC022506.38| Homo sapiens 12 BAC RP11-181L23 (Roswell Park Ca... 40 8.5
36gb|BC035831.1| Homo sapiens, clone IMAGE:5581527, mRNA 40 8.5
37gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 8.5
38emb|AL161540.2|ATCHRIV40 Arabidopsis thaliana DNA chromosome 4, ... 40 8.5
39gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.5 
>dbj|AK100596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106P10, full
            insert sequence
          Length = 2093

 Score =  454 bits (229), Expect = e-124
 Identities = 350/389 (89%), Gaps = 1/389 (0%)
 Strand = Plus / Plus

                                                                        
Query: 11   aaccgatatatttctttcgatatacaatctccatagnatccccatacttttgggataggc 70
            ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||
Sbjct: 1265 aaccgatatatttctttcgatatacaacctccatag-atctccatacttttgggatcggc 1323

                                                                        
Query: 71   caaatgagtttgaaccagagaggtttacagttccaaagaaggatgagaacatagaagggt 130
            || ||||||||||||||||||| ||| |||| ||||| |||||||||| |||||||||||
Sbjct: 1324 cagatgagtttgaaccagagagattttcagtaccaaaaaaggatgagagcatagaagggt 1383

                                                                        
Query: 131  gggctgggtttgatcctgaccggagtcctggcgcgatgtatcccaacgagattatagcag 190
            ||||||| ||||||||||||||||||||||| || |||||||| ||||||||| ||||||
Sbjct: 1384 gggctggttttgatcctgaccggagtcctggtgctatgtatcctaacgagattttagcag 1443

                                                                        
Query: 191  actttgctttcctccccttcggcggaggaccacgcaaatgcgtgggagaccaattcgcgc 250
            ||||||||||||| || || ||||||||||| |||||||||||||||||||| || || |
Sbjct: 1444 actttgctttccttccttttggcggaggaccccgcaaatgcgtgggagaccagtttgcac 1503

                                                                        
Query: 251  tcctcgagtcaacagtggccttggccctgctattgcaaaagtttgacgtggagctgcgag 310
            |||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 1504 tcctcgagtcgacagtagccctggccctgctattgcaaaagtttgatgtggagctgcgag 1563

                                                                        
Query: 311  gctcgcccgatgaagtagagatggtgacaggcgcgacgattcacacaaagaacggtttgt 370
            | || ||||||||||| ||||||||||||||||| || |||||||| |||| ||| || |
Sbjct: 1564 gatcacccgatgaagtggagatggtgacaggcgcaacaattcacacgaagagcgggttat 1623

                                         
Query: 371  ggtgcaggctgaggaaaaggacttgatca 399
            |||||||  |||||| |||||| ||||||
Sbjct: 1624 ggtgcagagtgaggagaaggacctgatca 1652
to top
>dbj|AK066680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071M18, full
            insert sequence
          Length = 2401

 Score =  454 bits (229), Expect = e-124
 Identities = 350/389 (89%), Gaps = 1/389 (0%)
 Strand = Plus / Plus

                                                                        
Query: 11   aaccgatatatttctttcgatatacaatctccatagnatccccatacttttgggataggc 70
            ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||
Sbjct: 1608 aaccgatatatttctttcgatatacaacctccatag-atctccatacttttgggatcggc 1666

                                                                        
Query: 71   caaatgagtttgaaccagagaggtttacagttccaaagaaggatgagaacatagaagggt 130
            || ||||||||||||||||||| ||| |||| ||||| |||||||||| |||||||||||
Sbjct: 1667 cagatgagtttgaaccagagagattttcagtaccaaaaaaggatgagagcatagaagggt 1726

                                                                        
Query: 131  gggctgggtttgatcctgaccggagtcctggcgcgatgtatcccaacgagattatagcag 190
            ||||||| ||||||||||||||||||||||| || |||||||| ||||||||| ||||||
Sbjct: 1727 gggctggttttgatcctgaccggagtcctggtgctatgtatcctaacgagattttagcag 1786

                                                                        
Query: 191  actttgctttcctccccttcggcggaggaccacgcaaatgcgtgggagaccaattcgcgc 250
            ||||||||||||| || || ||||||||||| |||||||||||||||||||| || || |
Sbjct: 1787 actttgctttccttccttttggcggaggaccccgcaaatgcgtgggagaccagtttgcac 1846

                                                                        
Query: 251  tcctcgagtcaacagtggccttggccctgctattgcaaaagtttgacgtggagctgcgag 310
            |||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 1847 tcctcgagtcgacagtagccctggccctgctattgcaaaagtttgatgtggagctgcgag 1906

                                                                        
Query: 311  gctcgcccgatgaagtagagatggtgacaggcgcgacgattcacacaaagaacggtttgt 370
            | || ||||||||||| ||||||||||||||||| || |||||||| |||| ||| || |
Sbjct: 1907 gatcacccgatgaagtggagatggtgacaggcgcaacaattcacacgaagagcgggttat 1966

                                         
Query: 371  ggtgcaggctgaggaaaaggacttgatca 399
            |||||||  |||||| |||||| ||||||
Sbjct: 1967 ggtgcagagtgaggagaaggacctgatca 1995
to top
>dbj|AK062235.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-D12, full
            insert sequence
          Length = 1498

 Score =  454 bits (229), Expect = e-124
 Identities = 350/389 (89%), Gaps = 1/389 (0%)
 Strand = Plus / Plus

                                                                        
Query: 11   aaccgatatatttctttcgatatacaatctccatagnatccccatacttttgggataggc 70
            ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||
Sbjct: 634  aaccgatatatttctttcgatatacaacctccatag-atctccatacttttgggatcggc 692

                                                                        
Query: 71   caaatgagtttgaaccagagaggtttacagttccaaagaaggatgagaacatagaagggt 130
            || ||||||||||||||||||| ||| |||| ||||| |||||||||| |||||||||||
Sbjct: 693  cagatgagtttgaaccagagagattttcagtaccaaaaaaggatgagagcatagaagggt 752

                                                                        
Query: 131  gggctgggtttgatcctgaccggagtcctggcgcgatgtatcccaacgagattatagcag 190
            ||||||| ||||||||||||||||||||||| || |||||||| ||||||||| ||||||
Sbjct: 753  gggctggttttgatcctgaccggagtcctggtgctatgtatcctaacgagattttagcag 812

                                                                        
Query: 191  actttgctttcctccccttcggcggaggaccacgcaaatgcgtgggagaccaattcgcgc 250
            ||||||||||||| || || ||||||||||| |||||||||||||||||||| || || |
Sbjct: 813  actttgctttccttccttttggcggaggaccccgcaaatgcgtgggagaccagtttgcac 872

                                                                        
Query: 251  tcctcgagtcaacagtggccttggccctgctattgcaaaagtttgacgtggagctgcgag 310
            |||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 873  tcctcgagtcgacagtagccctggccctgctattgcaaaagtttgatgtggagctgcgag 932

                                                                        
Query: 311  gctcgcccgatgaagtagagatggtgacaggcgcgacgattcacacaaagaacggtttgt 370
            | || ||||||||||| ||||||||||||||||| || |||||||| |||| ||| || |
Sbjct: 933  gatcacccgatgaagtggagatggtgacaggcgcaacaattcacacgaagagcgggttat 992

                                         
Query: 371  ggtgcaggctgaggaaaaggacttgatca 399
            |||||||  |||||| |||||| ||||||
Sbjct: 993  ggtgcagagtgaggagaaggacctgatca 1021
to top
>ref|XM_464306.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1716

 Score =  448 bits (226), Expect = e-122
 Identities = 344/382 (90%), Gaps = 1/382 (0%)
 Strand = Plus / Plus

                                                                        
Query: 11   aaccgatatatttctttcgatatacaatctccatagnatccccatacttttgggataggc 70
            ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||
Sbjct: 1332 aaccgatatatttctttcgatatacaacctccatag-atctccatacttttgggatcggc 1390

                                                                        
Query: 71   caaatgagtttgaaccagagaggtttacagttccaaagaaggatgagaacatagaagggt 130
            || ||||||||||||||||||| ||| |||| ||||| |||||||||| |||||||||||
Sbjct: 1391 cagatgagtttgaaccagagagattttcagtaccaaaaaaggatgagagcatagaagggt 1450

                                                                        
Query: 131  gggctgggtttgatcctgaccggagtcctggcgcgatgtatcccaacgagattatagcag 190
            ||||||| ||||||||||||||||||||||| || |||||||| ||||||||| ||||||
Sbjct: 1451 gggctggttttgatcctgaccggagtcctggtgctatgtatcctaacgagattttagcag 1510

                                                                        
Query: 191  actttgctttcctccccttcggcggaggaccacgcaaatgcgtgggagaccaattcgcgc 250
            ||||||||||||| || || ||||||||||| |||||||||||||||||||| || || |
Sbjct: 1511 actttgctttccttccttttggcggaggaccccgcaaatgcgtgggagaccagtttgcac 1570

                                                                        
Query: 251  tcctcgagtcaacagtggccttggccctgctattgcaaaagtttgacgtggagctgcgag 310
            |||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 1571 tcctcgagtcgacagtagccctggccctgctattgcaaaagtttgatgtggagctgcgag 1630

                                                                        
Query: 311  gctcgcccgatgaagtagagatggtgacaggcgcgacgattcacacaaagaacggtttgt 370
            | || ||||||||||| ||||||||||||||||| || |||||||| |||| ||| || |
Sbjct: 1631 gatcacccgatgaagtggagatggtgacaggcgcaacaattcacacgaagagcgggttat 1690

                                  
Query: 371  ggtgcaggctgaggaaaaggac 392
            |||||||  |||||| ||||||
Sbjct: 1691 ggtgcagagtgaggagaaggac 1712
to top
>gb|AY105805.1| Zea mays PCO075459 mRNA sequence
          Length = 793

 Score =  343 bits (173), Expect = 4e-91
 Identities = 333/385 (86%), Gaps = 1/385 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  accgatatatttctttcgatatacaatctccatagnatccccatacttttgggataggcc 71
           |||||||||||| ||||| ||||||| ||||| || |||||| || || |||||  ||||
Sbjct: 228 accgatatatttgtttcggtatacaacctccacag-atccccgtatttctgggaccggcc 286

                                                                       
Query: 72  aaatgagtttgaaccagagaggtttacagttccaaagaaggatgagaacatagaagggtg 131
           ||||||||||||||| ||||||||| | || || |||||||| |||| ||||||||| ||
Sbjct: 287 aaatgagtttgaacccgagaggttttccgtcccgaagaaggacgagagcatagaaggctg 346

                                                                       
Query: 132 ggctgggtttgatcctgaccggagtcctggcgcgatgtatcccaacgagattatagcaga 191
           | |||| ||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||
Sbjct: 347 gtctggttttgaccctgaccggagtcctggcgcaatgtaccccaacgagatcatagcgga 406

                                                                       
Query: 192 ctttgctttcctccccttcggcggaggaccacgcaaatgcgtgggagaccaattcgcgct 251
           ||| |||||||||||||||||||| || || ||||| |||||||| ||||| ||||||||
Sbjct: 407 cttcgctttcctccccttcggcggggggcctcgcaagtgcgtgggggaccagttcgcgct 466

                                                                       
Query: 252 cctcgagtcaacagtggccttggccctgctattgcaaaagtttgacgtggagctgcgagg 311
           ||| ||||| || |||||  ||||||||||  |||  ||||| |||||||||||| ||||
Sbjct: 467 cctggagtcgacggtggctctggccctgctgctgcggaagttcgacgtggagctgagagg 526

                                                                       
Query: 312 ctcgcccgatgaagtagagatggtgacaggcgcgacgattcacacaaagaacggtttgtg 371
            |||||||| ||||| ||||||||||||||||| ||||| ||||| ||||||||  ||||
Sbjct: 527 gtcgcccgacgaagtggagatggtgacaggcgccacgatccacacgaagaacgggctgtg 586

                                    
Query: 372 gtgcaggctgaggaaaaggacttga 396
           |||||||||||||| ||||||||||
Sbjct: 587 gtgcaggctgaggagaaggacttga 611
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  240 bits (121), Expect = 5e-60
 Identities = 196/221 (88%)
 Strand = Plus / Plus

                                                                           
Query: 179     agattatagcagactttgctttcctccccttcggcggaggaccacgcaaatgcgtgggag 238
               ||||| ||||||||||||||||||| || || ||||||||||| ||||||||||||||||
Sbjct: 4001505 agattttagcagactttgctttccttccttttggcggaggaccccgcaaatgcgtgggag 4001564

                                                                           
Query: 239     accaattcgcgctcctcgagtcaacagtggccttggccctgctattgcaaaagtttgacg 298
               |||| || || ||||||||||| ||||| ||| ||||||||||||||||||||||||| |
Sbjct: 4001565 accagtttgcactcctcgagtcgacagtagccctggccctgctattgcaaaagtttgatg 4001624

                                                                           
Query: 299     tggagctgcgaggctcgcccgatgaagtagagatggtgacaggcgcgacgattcacacaa 358
               ||||||||||||| || ||||||||||| ||||||||||||||||| || |||||||| |
Sbjct: 4001625 tggagctgcgaggatcacccgatgaagtggagatggtgacaggcgcaacaattcacacga 4001684

                                                        
Query: 359     agaacggtttgtggtgcaggctgaggaaaaggacttgatca 399
               ||| ||| || ||||||||  |||||| |||||| ||||||
Sbjct: 4001685 agagcgggttatggtgcagagtgaggagaaggacctgatca 4001725



 Score =  182 bits (92), Expect = 9e-43
 Identities = 138/152 (90%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                           
Query: 29      gatatacaatctccatagnatccccatacttttgggataggccaaatgagtttgaaccag 88
               ||||||||| |||||||| ||| ||||||||||||||| ||||| |||||||||||||||
Sbjct: 4001270 gatatacaacctccatag-atctccatacttttgggatcggccagatgagtttgaaccag 4001328

                                                                           
Query: 89      agaggtttacagttccaaagaaggatgagaacatagaagggtgggctgggtttgatcctg 148
               |||| ||| |||| ||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct: 4001329 agagattttcagtaccaaaaaaggatgagagcatagaagggtgggctggttttgatcctg 4001388

                                               
Query: 149     accggagtcctggcgcgatgtatcccaacgag 180
               ||||||||||||| || |||||||| ||||||
Sbjct: 4001389 accggagtcctggtgctatgtatcctaacgag 4001420
to top
>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0073A21
          Length = 170051

 Score =  240 bits (121), Expect = 5e-60
 Identities = 196/221 (88%)
 Strand = Plus / Plus

                                                                         
Query: 179   agattatagcagactttgctttcctccccttcggcggaggaccacgcaaatgcgtgggag 238
             ||||| ||||||||||||||||||| || || ||||||||||| ||||||||||||||||
Sbjct: 48171 agattttagcagactttgctttccttccttttggcggaggaccccgcaaatgcgtgggag 48230

                                                                         
Query: 239   accaattcgcgctcctcgagtcaacagtggccttggccctgctattgcaaaagtttgacg 298
             |||| || || ||||||||||| ||||| ||| ||||||||||||||||||||||||| |
Sbjct: 48231 accagtttgcactcctcgagtcgacagtagccctggccctgctattgcaaaagtttgatg 48290

                                                                         
Query: 299   tggagctgcgaggctcgcccgatgaagtagagatggtgacaggcgcgacgattcacacaa 358
             ||||||||||||| || ||||||||||| ||||||||||||||||| || |||||||| |
Sbjct: 48291 tggagctgcgaggatcacccgatgaagtggagatggtgacaggcgcaacaattcacacga 48350

                                                      
Query: 359   agaacggtttgtggtgcaggctgaggaaaaggacttgatca 399
             ||| ||| || ||||||||  |||||| |||||| ||||||
Sbjct: 48351 agagcgggttatggtgcagagtgaggagaaggacctgatca 48391



 Score =  182 bits (92), Expect = 9e-43
 Identities = 138/152 (90%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                         
Query: 29    gatatacaatctccatagnatccccatacttttgggataggccaaatgagtttgaaccag 88
             ||||||||| |||||||| ||| ||||||||||||||| ||||| |||||||||||||||
Sbjct: 47936 gatatacaacctccatag-atctccatacttttgggatcggccagatgagtttgaaccag 47994

                                                                         
Query: 89    agaggtttacagttccaaagaaggatgagaacatagaagggtgggctgggtttgatcctg 148
             |||| ||| |||| ||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct: 47995 agagattttcagtaccaaaaaaggatgagagcatagaagggtgggctggttttgatcctg 48054

                                             
Query: 149   accggagtcctggcgcgatgtatcccaacgag 180
             ||||||||||||| || |||||||| ||||||
Sbjct: 48055 accggagtcctggtgctatgtatcctaacgag 48086
to top
>emb|Z49263.1|PSCYTP450 P.sativum mRNA for cytochrome P450
          Length = 1926

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 100/122 (81%)
 Strand = Plus / Plus

                                                                        
Query: 124  gaagggtgggctgggtttgatcctgaccggagtcctggcgcgatgtatcccaacgagatt 183
            |||||||||||||| ||||| ||    || |||||||| ||  ||||||| |||||||||
Sbjct: 1540 gaagggtgggctggttttgacccatctcgaagtcctggagccttgtatccaaacgagatt 1599

                                                                        
Query: 184  atagcagactttgctttcctccccttcggcggaggaccacgcaaatgcgtgggagaccaa 243
            ||| |||| ||||| ||| | || || || || |||||||| |||||||| |||||||||
Sbjct: 1600 atatcagattttgcattcttgccttttggtggtggaccacgaaaatgcgttggagaccaa 1659

              
Query: 244  tt 245
            ||
Sbjct: 1660 tt 1661
to top
>ref|NM_117600.3| Arabidopsis thaliana CYP97B3; heme binding / iron ion binding /
            monooxygenase/ oxygen binding AT4G15110 (CYP97B3) mRNA,
            complete cds
          Length = 1932

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                        
Query: 169  tatcccaacgagattatagcagactttgctttcctccccttcggcggaggaccacgcaaa 228
            ||||| || ||||| |||||||||||||| ||| | || || || ||||||||| | |||
Sbjct: 1553 tatccgaatgagataatagcagactttgcattcttaccatttggtggaggaccaagaaaa 1612

                          
Query: 229  tgcgtgggagacca 242
            ||| | ||||||||
Sbjct: 1613 tgcattggagacca 1626



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 36   aatctccatagnatccccatacttttgggata 67
            ||||||||||| ||| ||||||||||||||||
Sbjct: 1421 aatctccatag-atctccatacttttgggata 1451
to top
>gb|AC123693.13| Mus musculus chromosome 3, clone RP23-326F23, complete sequence
          Length = 225242

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 580    tgcatgcatgcatctaaacaga 601
              ||||||||||||||||||||||
Sbjct: 155122 tgcatgcatgcatctaaacaga 155143
to top
>gb|AY062675.1| Arabidopsis thaliana cytochrome P450 (Z97337.39) mRNA, complete cds
          Length = 1921

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                        
Query: 169  tatcccaacgagattatagcagactttgctttcctccccttcggcggaggaccacgcaaa 228
            ||||| || ||||| |||||||||||||| ||| | || || || ||||||||| | |||
Sbjct: 1546 tatccgaatgagataatagcagactttgcattcttaccatttggtggaggaccaagaaaa 1605

                          
Query: 229  tgcgtgggagacca 242
            ||| | ||||||||
Sbjct: 1606 tgcattggagacca 1619



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 36   aatctccatagnatccccatacttttgggata 67
            ||||||||||| ||| ||||||||||||||||
Sbjct: 1414 aatctccatag-atctccatacttttgggata 1444
to top
>emb|BX827420.1|CNS0A4N0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS52ZB12 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1930

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                        
Query: 169  tatcccaacgagattatagcagactttgctttcctccccttcggcggaggaccacgcaaa 228
            ||||| || ||||| |||||||||||||| ||| | || || || ||||||||| | |||
Sbjct: 1551 tatccgaatgagataatagcagactttgcattcttaccatttggtggaggaccaagaaaa 1610

                          
Query: 229  tgcgtgggagacca 242
            ||| | ||||||||
Sbjct: 1611 tgcattggagacca 1624



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 36   aatctccatagnatccccatacttttgggata 67
            ||||||||||| ||| ||||||||||||||||
Sbjct: 1419 aatctccatag-atctccatacttttgggata 1449
to top
>dbj|AB192877.1| Human enterovirus 90 genomic RNA, complete genome
          Length = 7425

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 603  ttacagtagtacactccatgcc 624
            ||||||||||||||||||||||
Sbjct: 3535 ttacagtagtacactccatgcc 3514
to top
>gb|BT002582.1| Arabidopsis thaliana cytochrome P450 (At4g15110) mRNA, complete cds
          Length = 1886

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                        
Query: 169  tatcccaacgagattatagcagactttgctttcctccccttcggcggaggaccacgcaaa 228
            ||||| || ||||| |||||||||||||| ||| | || || || ||||||||| | |||
Sbjct: 1513 tatccgaatgagataatagcagactttgcattcttaccatttggtggaggaccaagaaaa 1572

                          
Query: 229  tgcgtgggagacca 242
            ||| | ||||||||
Sbjct: 1573 tgcattggagacca 1586



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 36   aatctccatagnatccccatacttttgggata 67
            ||||||||||| ||| ||||||||||||||||
Sbjct: 1381 aatctccatag-atctccatacttttgggata 1411
to top
>gb|AC159002.2| Mus musculus BAC clone RP23-203D7 from chromosome 14, complete
            sequence
          Length = 181842

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 579  gtgcatgcatgcatctaaaca 599
            |||||||||||||||||||||
Sbjct: 6284 gtgcatgcatgcatctaaaca 6264
to top
>gb|AC163027.5| Mus musculus chromosome 5, clone RP23-396H22, complete sequence
          Length = 216377

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 580    tgcatgcatgcatctaaacag 600
              |||||||||||||||||||||
Sbjct: 152059 tgcatgcatgcatctaaacag 152039
to top
>emb|AL020989.2|HS192P9 Human DNA sequence from clone RP1-192P9 on chromosome Xp11.23-11.4
             Contains a transmembrane 4 superfamily member 11
             (plasmolipin) (PMLP) pseudogene and a CpG island, complete
             sequence
          Length = 141132

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 101   ttccaaagaaggatgagaaca 121
             |||||||||||||||||||||
Sbjct: 77793 ttccaaagaaggatgagaaca 77813
to top
>gb|AC097105.10| Homo sapiens 3 BAC RP11-119P22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 111122

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 408   aattttgcaccaaaaggctttgctt 432
             ||||||||||||||||| |||||||
Sbjct: 73086 aattttgcaccaaaaggatttgctt 73110
to top
>gb|AC093830.3| Homo sapiens BAC clone RP11-401G24 from 4, complete sequence
          Length = 153887

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 375    caggctgaggaaaaggacttg 395
              |||||||||||||||||||||
Sbjct: 101368 caggctgaggaaaaggacttg 101348
to top
>gb|AC118598.8| Mus musculus chromosome 5, clone RP23-446M13, complete sequence
          Length = 186276

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 580    tgcatgcatgcatctaaacag 600
              |||||||||||||||||||||
Sbjct: 129775 tgcatgcatgcatctaaacag 129755
to top
>gb|AC174678.2| Mus musculus BAC clone RP23-11O22 from chromosome 14, complete sequence
          Length = 224638

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 579    gtgcatgcatgcatctaaaca 599
              |||||||||||||||||||||
Sbjct: 109411 gtgcatgcatgcatctaaaca 109391
to top
>gb|AC151060.4| Bos taurus  BAC CH240-293H4 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 160650

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     ttacagttccaaagaaggat 114
              ||||||||||||||||||||
Sbjct: 115307 ttacagttccaaagaaggat 115326
to top
>gb|AC124535.4| Mus musculus BAC clone RP23-331C24 from chromosome 18, complete
             sequence
          Length = 206191

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   ctcgagtcaacagtggcctt 272
             ||||||||||||||||||||
Sbjct: 96696 ctcgagtcaacagtggcctt 96677
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 572      gtgctgcgtgcatgcatgca 591
                ||||||||||||||||||||
Sbjct: 15527694 gtgctgcgtgcatgcatgca 15527713



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 573     tgctgcgtgcatgcatgcat 592
               ||||||||||||||||||||
Sbjct: 7737799 tgctgcgtgcatgcatgcat 7737780
to top
>gb|AC165311.3| Mus musculus chromosome 18, clone RP23-352F3, complete sequence
          Length = 174474

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    ctcgagtcaacagtggcctt 272
              ||||||||||||||||||||
Sbjct: 125173 ctcgagtcaacagtggcctt 125154
to top
>gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete
             sequence
          Length = 115079

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 572   gtgctgcgtgcatgcatgca 591
             ||||||||||||||||||||
Sbjct: 27245 gtgctgcgtgcatgcatgca 27264
to top
>emb|Z48717.1|CET10B9 Caenorhabditis elegans Cosmid T10B9, complete sequence
          Length = 34881

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 71    caaatgagtttgaaccagagaggt 94
             ||||||||||| ||||||||||||
Sbjct: 22072 caaatgagtttaaaccagagaggt 22049
to top
>emb|AL161630.12| Human DNA sequence from clone RP11-500B12 on chromosome 9 Contains a
             novel gene, a ribosomal protein L35a (RPL35A) and a CpG
             island. pseudogene, complete sequence
          Length = 200970

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 572   gtgctgcgtgcatgcatgca 591
             ||||||||||||||||||||
Sbjct: 74799 gtgctgcgtgcatgcatgca 74780
to top
>emb|CR942205.4| Human DNA sequence from clone RP11-948M1 on chromosome 6, complete
              sequence
          Length = 176819

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    catagaagggtgggctgggt 139
              ||||||||||||||||||||
Sbjct: 170558 catagaagggtgggctgggt 170539
to top
>emb|Z97337.2|ATFCA2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2
          Length = 202860

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                              
Query: 36     aatctccatagnatccccatacttttgggata 67
              ||||||||||| ||| ||||||||||||||||
Sbjct: 195474 aatctccatag-atctccatacttttgggata 195444



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                          
Query: 179    agattatagcagactttgctttcctccccttcggcggaggaccacgcaaatgcgtgggag 238
              |||| |||||||||||||| ||| | || || || ||||||||| | |||||| | ||||
Sbjct: 195210 agataatagcagactttgcattcttaccatttggtggaggaccaagaaaatgcattggag 195151

                  
Query: 239    acca 242
              ||||
Sbjct: 195150 acca 195147
to top
>gb|AC134698.10| Homo sapiens chromosome 8, clone RP11-359P18, complete sequence
          Length = 173305

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   atgaagtagagatggtgaca 339
             ||||||||||||||||||||
Sbjct: 34667 atgaagtagagatggtgaca 34648
to top
>gb|AC106760.2| Homo sapiens chromosome 5 clone RP11-215G15, complete sequence
          Length = 78190

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  gattatagcagactttgctt 199
            ||||||||||||||||||||
Sbjct: 8942 gattatagcagactttgctt 8961
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 572      gtgctgcgtgcatgcatgca 591
                ||||||||||||||||||||
Sbjct: 15522228 gtgctgcgtgcatgcatgca 15522247



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 573     tgctgcgtgcatgcatgcat 592
               ||||||||||||||||||||
Sbjct: 7735634 tgctgcgtgcatgcatgcat 7735615
to top
>gb|AF230636.7| Homo sapiens chromosome 8 clone RP4-801G19 map cen, complete sequence
          Length = 100712

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   atgaagtagagatggtgaca 339
             ||||||||||||||||||||
Sbjct: 18219 atgaagtagagatggtgaca 18200
to top
>gb|AC022506.38| Homo sapiens 12 BAC RP11-181L23 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 172136

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 371  ggtgcaggctgaggaaaagg 390
            ||||||||||||||||||||
Sbjct: 3339 ggtgcaggctgaggaaaagg 3358
to top
>gb|BC035831.1| Homo sapiens, clone IMAGE:5581527, mRNA
          Length = 1342

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 371 ggtgcaggctgaggaaaagg 390
           ||||||||||||||||||||
Sbjct: 120 ggtgcaggctgaggaaaagg 101
to top
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    tcaacagtggccttggccct 278
              ||||||||||||||||||||
Sbjct: 265317 tcaacagtggccttggccct 265298
to top
>emb|AL161540.2|ATCHRIV40 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 40
          Length = 197405

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                              
Query: 36     aatctccatagnatccccatacttttgggata 67
              ||||||||||| ||| ||||||||||||||||
Sbjct: 140928 aatctccatag-atctccatacttttgggata 140898



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                          
Query: 179    agattatagcagactttgctttcctccccttcggcggaggaccacgcaaatgcgtgggag 238
              |||| |||||||||||||| ||| | || || || ||||||||| | |||||| | ||||
Sbjct: 140664 agataatagcagactttgcattcttaccatttggtggaggaccaagaaaatgcattggag 140605

                  
Query: 239    acca 242
              ||||
Sbjct: 140604 acca 140601
to top
>gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0078P24, from chromosome 3, complete sequence
          Length = 146930

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 573    tgctgcgtgcatgcatgcat 592
              ||||||||||||||||||||
Sbjct: 114995 tgctgcgtgcatgcatgcat 115014


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,223,447
Number of Sequences: 3902068
Number of extensions: 5223447
Number of successful extensions: 92759
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92460
Number of HSP's gapped (non-prelim): 293
length of query: 625
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 602
effective length of database: 17,143,297,704
effective search space: 10320265217808
effective search space used: 10320265217808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top