ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8p04 |
|---|---|
| Clone Library Name | barley_pub |
>PSD8_DICDI (P02889) Probable 26S proteasome non-ATPase regulatory subunit 8| (Vegetative cell protein X) (M4 protein) Length = 263 Score = 148 bits (374), Expect = 1e-35 Identities = 79/190 (41%), Positives = 120/190 (63%), Gaps = 1/190 (0%) Frame = +1 Query: 34 KAACKRSDLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVE-ELKLAREIYEHAVLLSVK 210 K SD +L QLK+ T P + V+ +L LAREI E L S+K Sbjct: 15 KLVAGNSDKAQITPVLVQLKLAATIHLEKPTSLSNVSDKVKKDLVLAREILELISLYSIK 74 Query: 211 MEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTELELLPA 390 ++D D+FER F QLK YY D I+ PS++EY I+GLNL+RLL +++ +EFH+E+EL+ Sbjct: 75 IKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKHKTSEFHSEIELIEF 134 Query: 391 KALENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEIAGCSEKG 570 L+N+ IK + +E+S EG+YN+++ +R P E Y F+D+LA +++++IA CSEK Sbjct: 135 NNLDNSFIKFPLLVEKSITEGSYNKIIQSRSGVPSEYYQVFLDILADSIKEDIANCSEKS 194 Query: 571 YDYLSISDAK 600 + LS+ DA+ Sbjct: 195 FKTLSLKDAE 204
>PSD8_PONPY (Q5RE15) 26S proteasome non-ATPase regulatory subunit 8| Length = 257 Score = 146 bits (368), Expect = 5e-35 Identities = 86/196 (43%), Positives = 119/196 (60%), Gaps = 3/196 (1%) Frame = +1 Query: 19 LFERFKAACKRS--DLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHA 192 ++E+ K R +L L +LK++L + LP T ++L LAR+I E Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIG 58 Query: 193 VLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTE 372 S+ +D +FER QLK YY D LP S+ + ++GLNLL LL QNR+AEFHTE Sbjct: 59 AQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTE 118 Query: 373 LELLPAKALE-NACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEI 549 LE LPAK ++ N IKH V LEQ MEG+YN+V A+ P E+Y +F+D+L T+RDEI Sbjct: 119 LERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYAFFIDILLDTIRDEI 178 Query: 550 AGCSEKGYDYLSISDA 597 AGC EK Y+ + ++A Sbjct: 179 AGCIEKAYEKILFTEA 194
>PSD8_HUMAN (P48556) 26S proteasome non-ATPase regulatory subunit 8 (26S| proteasome regulatory subunit S14) (p31) Length = 257 Score = 146 bits (368), Expect = 5e-35 Identities = 86/196 (43%), Positives = 119/196 (60%), Gaps = 3/196 (1%) Frame = +1 Query: 19 LFERFKAACKRS--DLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHA 192 ++E+ K R +L L +LK++L + LP T ++L LAR+I E Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIG 58 Query: 193 VLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTE 372 S+ +D +FER QLK YY D LP S+ + ++GLNLL LL QNR+AEFHTE Sbjct: 59 AQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTE 118 Query: 373 LELLPAKALE-NACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEI 549 LE LPAK ++ N IKH V LEQ MEG+YN+V A+ P E+Y +F+D+L T+RDEI Sbjct: 119 LERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEI 178 Query: 550 AGCSEKGYDYLSISDA 597 AGC EK Y+ + ++A Sbjct: 179 AGCIEKAYEKILFTEA 194
>PSD8_MOUSE (Q9CX56) 26S proteasome non-ATPase regulatory subunit 8 (26S| proteasome regulatory subunit S14) Length = 257 Score = 145 bits (367), Expect = 7e-35 Identities = 84/185 (45%), Positives = 114/185 (61%), Gaps = 1/185 (0%) Frame = +1 Query: 46 KRSDLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHAVLLSVKMEDQD 225 K +L L +LK++L + LP T ++L LAR+I E S+ +D Sbjct: 12 KNPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILCKDIP 69 Query: 226 AFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTELELLPAKALE- 402 +FER QLK YY D LP S+ + ++GLNLL LL QNR+AEFHTELE LPAK ++ Sbjct: 70 SFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQT 129 Query: 403 NACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEIAGCSEKGYDYL 582 N IKH V LEQ MEG+YN+V A+ P E+Y +F+D+L T+RDEIAGC EK Y+ + Sbjct: 130 NVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKI 189 Query: 583 SISDA 597 ++A Sbjct: 190 LFAEA 194
>RPN12_SCHPO (P50524) 26S proteasome regulatory subunit rpn12| Length = 270 Score = 111 bits (277), Expect = 2e-24 Identities = 73/185 (39%), Positives = 110/185 (59%), Gaps = 2/185 (1%) Frame = +1 Query: 49 RSDLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHAVLLSVKMEDQDA 228 R D +A L +LKV L K LF T + E+ AR ++E+ VL+S++ D ++ Sbjct: 15 RKDWNACKKELLKLKVELAK----QNLFVPTSDK-EKASFARNVFEYGVLVSIQTCDIES 69 Query: 229 FERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTELELLPAKAL--E 402 F R Q+ P+Y D+ L PSS + GLNLL LL +NRIAEFHT LE +P K+L Sbjct: 70 FARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFER 126 Query: 403 NACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEIAGCSEKGYDYL 582 + ++ + LEQ+ MEGA+++V S ++ + YFM ++ VR+EIA C+EK Y + Sbjct: 127 DPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEI 186 Query: 583 SISDA 597 +S+A Sbjct: 187 PLSNA 191
>RPN12_YEAST (P32496) 26S proteasome regulatory subunit RPN12 (Nuclear integrity| protein 1) Length = 274 Score = 92.0 bits (227), Expect = 1e-18 Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 6/203 (2%) Frame = +1 Query: 10 VTQLFERFKAACKRSDLDASATLLSQLKVLLTKFPSL-PPLFQQTPNAVEELKLAREIYE 186 + +L + A + D A LL +K+ L K L P L Q + +L + + I E Sbjct: 4 LAELTKSLSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILE 63 Query: 187 HAVLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFH 366 L S++ + D+FE F QLKPYY L S + ++ L LL LL QN +FH Sbjct: 64 VGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFH 123 Query: 367 TELELLP--AKALE-NACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVY--FMDLLAK 531 +EL+ L K LE ++ + + ++L++ MEG+Y + Q+ + F D+L Sbjct: 124 SELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKS 183 Query: 532 TVRDEIAGCSEKGYDYLSISDAK 600 +RDEIA +E YD+L +S+ K Sbjct: 184 AIRDEIAKNTELSYDFLPLSNIK 206
>PSD8_CAEEL (Q23449) 26S proteasome non-ATPase regulatory subunit 8 (26S| proteasome regulatory subunit rpn-12) Length = 250 Score = 88.6 bits (218), Expect = 1e-17 Identities = 61/183 (33%), Positives = 95/183 (51%), Gaps = 2/183 (1%) Frame = +1 Query: 55 DLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHAVLLSVKMEDQDAFE 234 DL A L++L +L+ L N + ++++YE +VLL++ D + F+ Sbjct: 18 DLVAVEKALNELTKVLSASSDL--------NDKQSALASKDLYEISVLLAILKHDFETFD 69 Query: 235 RDFCQLKPYYMDTCGILPPSSMEYPIM-GLNLLRLLVQNRIAEFHTELELLPAKA-LENA 408 Q+ YY + P +S +M GL+L+ LL NR+++FH LE +P K NA Sbjct: 70 DYINQMHTYYT----MAPENSENKHLMTGLHLMFLLAANRLSDFHMLLEQIPQKEQTSNA 125 Query: 409 CIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEIAGCSEKGYDYLSI 588 I V +EQS MEGAYN+V+ + P Y F+ ++ T+R EIA EK + L+ Sbjct: 126 YISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIMLDTIRREIATSIEKSFKVLTA 185 Query: 589 SDA 597 DA Sbjct: 186 KDA 188
>TCO2_PONPY (Q5REL7) Transcobalamin-2 precursor (Transcobalamin II) (TCII) (TC| II) Length = 427 Score = 33.1 bits (74), Expect = 0.63 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = +1 Query: 382 LPAKALENACIKHGVELEQSFMEGAYNRVLSARQTAP---HETYV--YFMDLLAKTVRDE 546 +P L AC+K V L S +GA+ L Q P H+TY+ F D LA V E Sbjct: 258 MPGAELGTACLKARVALFASLQDGAFQNALMISQLLPVLNHKTYIDLIFPDCLAPRVMLE 317 Query: 547 IA 552 A Sbjct: 318 PA 319
>TCO2_HUMAN (P20062) Transcobalamin-2 precursor (Transcobalamin II) (TCII) (TC| II) Length = 427 Score = 33.1 bits (74), Expect = 0.63 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = +1 Query: 382 LPAKALENACIKHGVELEQSFMEGAYNRVLSARQTAP---HETYV--YFMDLLAKTVRDE 546 +P L AC+K V L S +GA+ L Q P H+TY+ F D LA V E Sbjct: 258 MPGAELGTACLKARVALLASLQDGAFQNALMISQLLPVLNHKTYIDLIFPDCLAPRVMLE 317 Query: 547 IA 552 A Sbjct: 318 PA 319
>DSC2_BOVIN (P33545) Desmocollin-2 precursor (Epithelial type 2 desmocollin)| (Fragment) Length = 863 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Frame = +1 Query: 52 SDLDASATLLSQLKV-LLTKFPSLPPLFQQTPN----AVEELKLAREIYEHAVLLSVKME 216 +D D TL ++LK ++ +FP+LP LF P KL RE+ + L +K++ Sbjct: 222 TDQDEPDTLHTRLKYSIIEQFPALPTLFSMHPTTGVITTSSSKLDRELID-KYQLKIKVQ 280 Query: 217 DQD 225 D D Sbjct: 281 DMD 283
>UVRA_LISMO (Q8Y4F6) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 956 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = +1 Query: 352 IAEFHTELELLPAKALENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFM 516 + E H L LL A+ C HG+E+ +E +RVL P +T + M Sbjct: 103 VTEIHDYLRLLYARVGHPVCPNHGIEITSQTIEQMVDRVLE----YPEKTRIQIM 153
>UVRA_LISMF (Q71WU0) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 956 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = +1 Query: 352 IAEFHTELELLPAKALENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFM 516 + E H L LL A+ C HG+E+ +E +RVL P +T + M Sbjct: 103 VTEIHDYLRLLYARVGHPVCPNHGIEITSQTIEQMVDRVLE----YPEKTRIQIM 153
>UVRA_LISIN (Q928A5) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 956 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = +1 Query: 352 IAEFHTELELLPAKALENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFM 516 + E H L LL A+ C HG+E+ +E +RVL P +T + M Sbjct: 103 VTEIHDYLRLLYARVGHPVCPNHGIEITSQTIEQMVDRVLE----YPEKTRIQIM 153
>LEA1_APHAV (Q95V77) Late embryogenesis abundant protein 1 (Aavlea1)| Length = 143 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 10/65 (15%) Frame = +1 Query: 415 KHGVELEQSFMEGAYNRVLSARQT----------APHETYVYFMDLLAKTVRDEIAGCSE 564 + G + EQ +ME A +V++A ++ A E F D +T+RD E Sbjct: 9 RQGEQQEQGYMEAAKEKVVNAWESTKETLSSTAQAAAEKTAEFRDSAGETIRDLTGQAQE 68 Query: 565 KGYDY 579 KG ++ Sbjct: 69 KGQEF 73
>UVRA_STAES (Q8CPY9) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 944 Score = 29.6 bits (65), Expect = 6.9 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 2/130 (1%) Frame = +1 Query: 211 MEDQDAFERDFC-QLKPYYMDTC-GILPPSSMEYPIMGLNLLRLLVQNRIAEFHTELELL 384 +E A+ R F Q+ +DT G+ P S++ N + + E + + LL Sbjct: 56 VESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVAT--VTEIYDYIRLL 113 Query: 385 PAKALENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEIAGCSE 564 A+ + C HG+E+E ++ +R+L + + + + I + Sbjct: 114 YARVGKPYCPYHGIEIESQTVQQMVDRILELEERTKIQLLAPVISHRKGSHEKLIEDIGK 173 Query: 565 KGYDYLSISD 594 KGY L + D Sbjct: 174 KGYVRLRVDD 183
>UVRA_STAEQ (Q5HQW9) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 944 Score = 29.6 bits (65), Expect = 6.9 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 2/130 (1%) Frame = +1 Query: 211 MEDQDAFERDFC-QLKPYYMDTC-GILPPSSMEYPIMGLNLLRLLVQNRIAEFHTELELL 384 +E A+ R F Q+ +DT G+ P S++ N + + E + + LL Sbjct: 56 VESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVAT--VTEIYDYIRLL 113 Query: 385 PAKALENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEIAGCSE 564 A+ + C HG+E+E ++ +R+L + + + + I + Sbjct: 114 YARVGKPYCPYHGIEIESQTVQQMVDRILELEERTKIQLLAPVISHRKGSHEKLIEDIGK 173 Query: 565 KGYDYLSISD 594 KGY L + D Sbjct: 174 KGYVRLRVDD 183
>RDR1_SCHPO (O14227) RNA-dependent RNA polymerase homolog 1 (Protein rdp1)| Length = 1215 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/70 (25%), Positives = 32/70 (45%) Frame = +1 Query: 199 LSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTELE 378 LS+++++ D F F Y + PP+ +EY G + Q++ FH+ LE Sbjct: 627 LSLEVKNHDMFPSAFQFRMGGYKGVLSLAPPTKLEYH-QGNLVFPRRSQDKFKSFHSTLE 685 Query: 379 LLPAKALENA 408 ++ NA Sbjct: 686 VIKISRFSNA 695
>TCO2_MOUSE (O88968) Transcobalamin-2 precursor (Transcobalamin II) (TCII) (TC| II) Length = 430 Score = 29.3 bits (64), Expect = 9.1 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +1 Query: 397 LENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLL 525 L ACIK G L S +GA+ L Q P + ++DL+ Sbjct: 266 LGTACIKAGTSLLLSLQDGAFQNPLMISQLLPILNHKTYLDLI 308
>ARHG1_RAT (Q9Z1I6) Rho guanine nucleotide exchange factor 1 (Lbc's second| cousin) Length = 919 Score = 29.3 bits (64), Expect = 9.1 Identities = 12/41 (29%), Positives = 24/41 (58%) Frame = +1 Query: 172 REIYEHAVLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPS 294 +E+ E+ + L V ++ + E +FC+L+P+ IL P+ Sbjct: 866 QEVEENLLSLEVVIKQLEELEEEFCRLRPFLSQLGEILSPN 906
>ARHG1_MOUSE (Q61210) Rho guanine nucleotide exchange factor 1 (Lymphoid blast| crisis-like 2) (Lbc's second cousin) Length = 920 Score = 29.3 bits (64), Expect = 9.1 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +1 Query: 172 REIYEHAVLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPS 294 +EI E+ + L V + + E +FC+L+P G L P+ Sbjct: 867 QEIEENLLSLEVAIRQLEELEEEFCRLRPLLSQLGGTLSPN 907
>CAPP_SYNP6 (P06516) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 1053 Score = 29.3 bits (64), Expect = 9.1 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = +1 Query: 97 LLTKFPSLPPLFQQTPNAVEEL--KLAREIYEHAVLLSVKMEDQDAFERDFCQLKPYYMD 270 LL F P F+ + VE K+ +I H V EDQ+ FER F Q+ + Sbjct: 907 LLRYFYEKWPFFRMVISKVEMTLAKVDLQIAHHYVHELANPEDQERFERVFSQIAAEFQL 966 Query: 271 TCGIL 285 TC ++ Sbjct: 967 TCHLV 971
>GLT35_DROME (Q8MVS5) Polypeptide N-acetylgalactosaminyltransferase 35A (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 35A) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 35A) (pp-GaNTase 35A) (Protein l(2)35Aa) (dGalNAc-T1) Length = 632 Score = 29.3 bits (64), Expect = 9.1 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -3 Query: 368 VWNSAILFWTNSLRRLSPMIGYSIEDGGSMPHVSM 264 VW A+LF+++SLR G+ I++G + P + Sbjct: 22 VWLLALLFYSHSLRSSIRSAGWRIDEGNATPRAEL 56 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,944,938 Number of Sequences: 219361 Number of extensions: 1592815 Number of successful extensions: 4858 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4685 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4846 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
