ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9e11 |
|---|---|
| Clone Library Name | barley_pub |
>CPSF2_ARATH (Q9LKF9) Cleavage and polyadenylation specificity factor, 100 kDa| subunit (CPSF 100 kDa subunit) Length = 739 Score = 188 bits (477), Expect(2) = 4e-48 Identities = 94/180 (52%), Positives = 120/180 (66%) Frame = +1 Query: 1 VVLASMSSLEVGFSHDIFVEMANEAKNLVLFTEKGQFGTLARMLQVDPPPKAVKVTMSKR 180 VVLASM+SLE GF+ +IFVE AN+ +NLVLFTE GQFGTLARMLQ PPPK VKVTMSKR Sbjct: 323 VVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFGTLARMLQSAPPPKFVKVTMSKR 382 Query: 181 VPLVGDELKAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAKASDPMVVDASLSRKSSN 360 VPL G+EL AY + +S+PM++D + Sbjct: 383 VPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASHGSDDNSSEPMIIDTKTTH--DV 440 Query: 361 AGSHVGGNVDILIDGFVSPATSIAPMFPFFENTADWDDFGEVINPDDYMMKQDEVDNNMM 540 GSH DILIDGFV P++S+APMFP+++NT++WDDFGE+INPDDY++K +++D M Sbjct: 441 IGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEWDDFGEIINPDDYVIKDEDMDRGAM 500 Score = 23.1 bits (48), Expect(2) = 4e-48 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +2 Query: 551 GDGMDGKLDEGSARLLL 601 G +DG+LDE +A L+L Sbjct: 503 GGDVDGRLDEATASLML 519
>CPSF2_MOUSE (O35218) Cleavage and polyadenylation specificity factor, 100 kDa| subunit (CPSF 100 kDa subunit) Length = 782 Score = 82.0 bits (201), Expect = 1e-15 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 7/179 (3%) Frame = +1 Query: 1 VVLASMSSLEVGFSHDIFVEMANEAKNLVLFTEKGQFGTLARMLQVDPPPKAVKVTMSKR 180 VVLAS LE GFS D+F++ + KN ++ T + GTLAR L +P K ++ + KR Sbjct: 325 VVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPTEKVTEIELRKR 384 Query: 181 VPLVGDELKAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAKASDPMVVDASLSRKSSN 360 V L G EL+ Y + +SD V+ + + S++ Sbjct: 385 VKLEGKELEEY---------VEKEKLKKEAAKKLEQSKEADIDSSDESDVEEDVDQPSAH 435 Query: 361 AGSHVGGNVDILIDG-------FVSPATSIAPMFPFFENTADWDDFGEVINPDDYMMKQ 516 H D+++ G F A PMFP E WD++GE+I P+D+++ + Sbjct: 436 KTKH-----DLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPE 489
>CPSF2_HUMAN (Q9P2I0) Cleavage and polyadenylation specificity factor, 100 kDa| subunit (CPSF 100 kDa subunit) Length = 782 Score = 81.6 bits (200), Expect = 2e-15 Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 7/179 (3%) Frame = +1 Query: 1 VVLASMSSLEVGFSHDIFVEMANEAKNLVLFTEKGQFGTLARMLQVDPPPKAVKVTMSKR 180 VVLAS LE GFS D+F++ + KN ++ T + GTLAR L +P K ++ + KR Sbjct: 325 VVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKR 384 Query: 181 VPLVGDELKAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAKASDPMVVDASLSRKSSN 360 V L G EL+ Y + +SD ++ + + S++ Sbjct: 385 VKLEGKELEEY---------LEKEKLKKEAAKKLEQSKEADIDSSDESDIEEDIDQPSAH 435 Query: 361 AGSHVGGNVDILIDG-------FVSPATSIAPMFPFFENTADWDDFGEVINPDDYMMKQ 516 H D+++ G F A PMFP E WD++GE+I P+D+++ + Sbjct: 436 KTKH-----DLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPE 489
>CPSF2_BOVIN (Q10568) Cleavage and polyadenylation specificity factor, 100 kDa| subunit (CPSF 100 kDa subunit) Length = 782 Score = 80.9 bits (198), Expect = 3e-15 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 7/179 (3%) Frame = +1 Query: 1 VVLASMSSLEVGFSHDIFVEMANEAKNLVLFTEKGQFGTLARMLQVDPPPKAVKVTMSKR 180 VVLAS LE GFS D+F++ + KN ++ T + GTLAR L +P K ++ + KR Sbjct: 325 VVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKVTEIELRKR 384 Query: 181 VPLVGDELKAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAKASDPMVVDASLSRKSSN 360 V L G EL+ Y + +SD + + + S++ Sbjct: 385 VKLEGKELEEY---------LEKEKLKKEAAKKLEQSKEADIDSSDESDAEEDIDQPSAH 435 Query: 361 AGSHVGGNVDILIDG-------FVSPATSIAPMFPFFENTADWDDFGEVINPDDYMMKQ 516 H D+++ G F A PMFP E WD++GE+I P+D+++ + Sbjct: 436 KTKH-----DLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPE 489
>CPSF2_XENLA (Q9W799) Cleavage and polyadenylation specificity factor, 100 kDa| subunit (CPSF 100 kDa subunit) Length = 783 Score = 79.0 bits (193), Expect = 1e-14 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 2/177 (1%) Frame = +1 Query: 1 VVLASMSSLEVGFSHDIFVEMANEAKNLVLFTEKGQFGTLARMLQVDPPPKAVKVTMSKR 180 VVLAS LE GFS ++F++ + KN V+ T + GTLAR L P + + + + KR Sbjct: 325 VVLASQPDLECGFSRELFIQWCQDPKNSVILTYRTTPGTLARFLIDHPSERIIDIELRKR 384 Query: 181 VPLVGDELKAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAKASDPMVVDASLSRKSSN 360 V L G EL+ Y + +SD V+ + + +S+ Sbjct: 385 VKLEGKELEEY---------VEKEKLKKEAAKKLEQSKEADLDSSDDSDVEEDIDQITSH 435 Query: 361 AGSH--VGGNVDILIDGFVSPATSIAPMFPFFENTADWDDFGEVINPDDYMMKQDEV 525 H + N F A PMFP E+ WD++GE+I P+D+++ + +V Sbjct: 436 KAKHDLMMKNEGSRKGSFFKQAKKSYPMFPAPEDRIKWDEYGEIIKPEDFLVPELQV 492
>CPSF2_DROME (Q9V3D6) Probable cleavage and polyadenylation specificity factor,| 100 kDa subunit (CPSF 100 kDa subunit) Length = 756 Score = 67.8 bits (164), Expect = 2e-11 Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 14/182 (7%) Frame = +1 Query: 1 VVLASMSSLEVGFSHDIFVEMANEAKNLVLFTEKGQFGTLA-RMLQVDPPPKAVKVTMSK 177 VVLAS LE GF+ D+FV+ A+ A N ++ T + GTLA +++ P K +++ + + Sbjct: 326 VVLASTPDLESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELVENCAPGKQIELDVRR 385 Query: 178 RVPLVGDELKAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAKASDPMVVDASLSRKSS 357 RV L G EL+ Y + +P++V + +SS Sbjct: 386 RVDLEGAELEEY--------------------------LRTQGEKLNPLIVKPDVEEESS 419 Query: 358 NAG------SHVGGNVDILI-------DGFVSPATSIAPMFPFFENTADWDDFGEVINPD 498 + S + G DI++ GF MFP+ E D++GE+IN D Sbjct: 420 SESEDDIEMSVITGKHDIVVRPEGRHHSGFFKSNKRHHVMFPYHEEKVKCDEYGEIINLD 479 Query: 499 DY 504 DY Sbjct: 480 DY 481
>CPSF2_CAEEL (O17403) Probable cleavage and polyadenylation specificity factor,| 100 kDa subunit (CPSF 100 kDa subunit) Length = 843 Score = 58.9 bits (141), Expect = 1e-08 Identities = 49/189 (25%), Positives = 73/189 (38%), Gaps = 21/189 (11%) Frame = +1 Query: 1 VVLASMSSLEVGFSHDIFVEMANEAKNLVLFTEKGQFGTLARMLQ----------VDPPP 150 VVL S +E GFS ++F++ ++ +N V+ T + TLA L + Sbjct: 325 VVLCSSQDMESGFSRELFLDWCSDPRNGVILTARPASFTLAAKLVNMAERANDGVLKHED 384 Query: 151 KAVKVTMSKRVPLVGDELKAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAKASD---P 321 + + + + KRV L G+EL Y ++ D P Sbjct: 385 RLISLVVKKRVALEGEELLEYKRRKAERDAEETRLRMERARRQAQANESDDSDDDDIAAP 444 Query: 322 MVVDASLSRKSSNAGSHVGGNV-DILID-------GFVSPATSIAPMFPFFENTADWDDF 477 +V S S GS + DI+ F PMFP+ E WDD+ Sbjct: 445 IVPRHSEKDFRSFDGSENDAHTFDIMAKWDNQQKASFFKTTKKSFPMFPYIEEKVKWDDY 504 Query: 478 GEVINPDDY 504 GEVI P+DY Sbjct: 505 GEVIKPEDY 513
>YSH1_YEAST (Q06224) Protein YSH1 (Yeast 73 kDa homolog 1)| Length = 779 Score = 36.6 bits (83), Expect = 0.057 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = +1 Query: 1 VVLASMSSLEVGFSHDIFVEMANEAKNLVLFTEKGQFGTLARMLQVDP 144 V+LAS L+ G S D+ E KNLVL T GT+A+ + ++P Sbjct: 334 VMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTMAKFIMLEP 381
>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (hPER) Length = 1290 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/66 (31%), Positives = 30/66 (45%) Frame = -1 Query: 415 ERQIHQLEYPHSRQHVNQHWMIYETSLHQQPWDQKPLHLIHEKPLAPSPC*G*PLALLPF 236 ER H P SR+H + + HQ P + P ++ H P+ PS P A PF Sbjct: 819 ERGCHHGPAPPSRRH-HCRSKAKRSRHHQNPRAEAPCYVSHPSPVPPSTPWPTPPATTPF 877 Query: 235 LSVLVP 218 +V+ P Sbjct: 878 PAVVQP 883
>LP61_EIMTE (P15714) Antigen LPMC-61 (Fragment)| Length = 255 Score = 30.8 bits (68), Expect = 3.1 Identities = 13/54 (24%), Positives = 27/54 (50%) Frame = -1 Query: 469 PSQQYFQRKETLERCWSPERQIHQLEYPHSRQHVNQHWMIYETSLHQQPWDQKP 308 P QQ+ ++ ++C + ++Q+ Q +Q + Q W + QQ W ++P Sbjct: 105 PQQQHRRQHGQQQQCMNSQQQLQQCGQ-QQQQQLQQQWSEQQQQQQQQQWPEQP 157
>STB3_YEAST (Q12427) Protein STB3 (SIN3-binding protein 3)| Length = 513 Score = 30.4 bits (67), Expect = 4.1 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 9/53 (16%) Frame = +1 Query: 301 NAKASDPMVVDASLSRKSSNAGSHVGGNVDI---------LIDGFVSPATSIA 432 NAK D ++ S RKS+N+ S+ GG V++ IDG +P T++A Sbjct: 130 NAKVKD-LISQESQRRKSNNSNSNSGGKVEMPMKVEHNITNIDGATTPPTAVA 181
>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3| precursor (LTBP-3) Length = 1268 Score = 30.4 bits (67), Expect = 4.1 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = -1 Query: 409 QIHQLEYPHSRQHVN-QHWMIYETSLHQQPWDQKPLHLIHEKPLAPSPC*G*PL 251 Q+H++E P++ + QH + + H +P QKPL + L PC PL Sbjct: 238 QVHRIEGPNAEGPASSQHLLPHPKPPHPRPPTQKPLGRCFQDTLPKQPCGSNPL 291
>GERXA_BACAN (Q9ZFB4) Spore germination protein XA| Length = 492 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%) Frame = +1 Query: 379 GNVDILIDGFVSPATSIAPM-FPFFENTAD 465 G +L+DG SP +IAP+ FPFF NTA+ Sbjct: 244 GRFILLVDG--SPTATIAPVSFPFFVNTAE 271
>1A1D_BRAJA (Q89XR6) 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7)| (ACC deaminase) (ACCD) Length = 337 Score = 29.6 bits (65), Expect = 6.9 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%) Frame = +1 Query: 352 SSNAGSHVGGNVD------ILIDGFVSPATSIAPMFPFFENTADWDDFGEVINPDDYMMK 513 S++AG VG D I IDG +PA + A + +NTA + G+ I DD ++ Sbjct: 200 STHAGMLVGFAADGRARKVIGIDGSFTPAQTKAQVLSIAQNTAKLVELGKDIVADDVVLI 259 Query: 514 QD 519 +D Sbjct: 260 ED 261
>NBEA_DROME (Q9W4E2) Protein neurobeachin (Protein rugose) (A-kinase anchor| protein 550) (AKAP 550) (dAKAP550) Length = 3584 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/70 (27%), Positives = 33/70 (47%) Frame = -1 Query: 535 YYYPLHLVSSYNHQD**PRRSHPSQQYFQRKETLERCWSPERQIHQLEYPHSRQHVNQHW 356 + YP L S HQ+ H QQ Q++ ++ + ++Q Q+ + HS H+ + Sbjct: 1992 HVYPQFLPES--HQNHNSNMQHQQQQQQQQQHQQQQHYYQQQQQQQVVHNHSHHHMTAAY 2049 Query: 355 MIYETSLHQQ 326 Y+ HQQ Sbjct: 2050 --YQQQQHQQ 2057
>NOLA2_BRABE (Q8I7X7) H/ACA ribonucleoprotein complex subunit 2-like protein| Length = 159 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -3 Query: 455 FSKKGNIGAMLVAGETNPSIRISTFPPTCEPA 360 F KKG G +L+AG+T P P CE A Sbjct: 76 FIKKGERGIVLIAGDTTPIEVYCHLPVVCEDA 107
>Y1459_HAEIN (P45215) Probable RNA polymerase sigma factor HI1459| Length = 194 Score = 29.3 bits (64), Expect = 9.1 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = -1 Query: 424 WSPERQIHQLEYPHSRQHVNQHWMIYETSLHQQPWDQKPLHLIHE 290 W PE +L+ + ++ W+I+ET L+ P Q + ++ E Sbjct: 111 WKPEYHPSELQGEEETVYSDEFWLIFETCLNCLPAKQAKIFMMRE 155
>CYA1_DROME (P32870) Ca(2+)/calmodulin-responsive adenylate cyclase (EC 4.6.1.1)| (ATP pyrophosphate-lyase) (Protein rutabaga) Length = 2248 Score = 29.3 bits (64), Expect = 9.1 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = -1 Query: 421 SPERQIHQLEYPHSRQHVNQHWMIYETSLHQQPWDQKPLHLIHEKPLAP 275 SP +Q HQ + +Q QH HQQ Q P H + LAP Sbjct: 2197 SPAQQQHQQQQQQQQQQQQQH--------HQQQLQQNPQHTQAQSHLAP 2237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,999,256 Number of Sequences: 219361 Number of extensions: 1441218 Number of successful extensions: 4068 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3913 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4048 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
