ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009232.1| Triticum aestivum clone wle1n.pk0102.g9:fis, full... 157 7e-36
2ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA 78 5e-12
3gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome... 78 5e-12
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 78 5e-12
5gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genom... 78 5e-12
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 78 5e-12
7dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clon... 78 5e-12
8dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 5e-12
9dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 5e-12
10dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 5e-12
11gb|BT016439.1| Zea mays clone Contig272 mRNA sequence 70 1e-09
12gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complet... 70 1e-09
13gb|AY109400.1| Zea mays CL1052_1 mRNA sequence 52 3e-04
14gb|AC121957.2| Mus musculus BAC clone RP24-232G13 from 18, compl... 38 4.6
15emb|AL844581.7| Mouse DNA sequence from clone RP23-146O7 on chro... 38 4.6

>gb|BT009232.1| Triticum aestivum clone wle1n.pk0102.g9:fis, full insert mRNA
           sequence
          Length = 1023

 Score =  157 bits (79), Expect = 7e-36
 Identities = 91/96 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccatgntggctggtttgtcgacccgctgataaacgggcattacccacanatnatgca 60
           |||||||| ||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct: 241 cttccatgttggctggtttgtcgacccgctgataaacgggcattacccgcagataatgca 300

                                               
Query: 61  agaccttgtgaaagagaggttgcccaagttcactcc 96
           |||||||||||||||||||||||||| |||||||||
Sbjct: 301 agaccttgtgaaagagaggttgcccaggttcactcc 336



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>ref|XM_469436.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1849

 Score = 77.8 bits (39), Expect = 5e-12
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                        
Query: 30   tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89
            ||||||| || |||||||| || || |||||||| ||||||||||| ||| |||||||||
Sbjct: 1000 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 1059

                     
Query: 90   tcactcctg 98
            |||||||||
Sbjct: 1060 tcactcctg 1068



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>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
             map R2847, complete sequence
          Length = 100918

 Score = 77.8 bits (39), Expect = 5e-12
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                         
Query: 30    tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89
             ||||||| || |||||||| || || |||||||| ||||||||||| ||| |||||||||
Sbjct: 82395 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 82336

                      
Query: 90    tcactcctg 98
             |||||||||
Sbjct: 82335 tcactcctg 82327



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 5e-12
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                            
Query: 30       tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89
                ||||||| || |||||||| || || |||||||| ||||||||||| ||| |||||||||
Sbjct: 27946667 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 27946608

                         
Query: 90       tcactcctg 98
                |||||||||
Sbjct: 27946607 tcactcctg 27946599



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>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
             sequence
          Length = 133889

 Score = 77.8 bits (39), Expect = 5e-12
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                         
Query: 30    tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89
             ||||||| || |||||||| || || |||||||| ||||||||||| ||| |||||||||
Sbjct: 78359 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 78418

                      
Query: 90    tcactcctg 98
             |||||||||
Sbjct: 78419 tcactcctg 78427



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 5e-12
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                            
Query: 30       tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89
                ||||||| || |||||||| || || |||||||| ||||||||||| ||| |||||||||
Sbjct: 28037991 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 28037932

                         
Query: 90       tcactcctg 98
                |||||||||
Sbjct: 28037931 tcactcctg 28037923



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>dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H02, full
            insert sequence
          Length = 1846

 Score = 77.8 bits (39), Expect = 5e-12
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                        
Query: 30   tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89
            ||||||| || |||||||| || || |||||||| ||||||||||| ||| |||||||||
Sbjct: 1003 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 1062

                     
Query: 90   tcactcctg 98
            |||||||||
Sbjct: 1063 tcactcctg 1071



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>dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full
            insert sequence
          Length = 1857

 Score = 77.8 bits (39), Expect = 5e-12
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                        
Query: 30   tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89
            ||||||| || |||||||| || || |||||||| ||||||||||| ||| |||||||||
Sbjct: 1002 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 1061

                     
Query: 90   tcactcctg 98
            |||||||||
Sbjct: 1062 tcactcctg 1070



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>dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021K07, full
            insert sequence
          Length = 1894

 Score = 77.8 bits (39), Expect = 5e-12
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                        
Query: 30   tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89
            ||||||| || |||||||| || || |||||||| ||||||||||| ||| |||||||||
Sbjct: 1006 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 1065

                     
Query: 90   tcactcctg 98
            |||||||||
Sbjct: 1066 tcactcctg 1074



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>dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G08, full
           insert sequence
          Length = 1302

 Score = 77.8 bits (39), Expect = 5e-12
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                       
Query: 30  tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89
           ||||||| || |||||||| || || |||||||| ||||||||||| ||| |||||||||
Sbjct: 447 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 506

                    
Query: 90  tcactcctg 98
           |||||||||
Sbjct: 507 tcactcctg 515



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>gb|BT016439.1| Zea mays clone Contig272 mRNA sequence
          Length = 1566

 Score = 69.9 bits (35), Expect = 1e-09
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                       
Query: 10  tggctggtttgtcgacccgctgataaacgggcattacccacanatnatgcaagaccttgt 69
           |||||||||||| || ||  |||||||||| || || ||||| || |||||||| || ||
Sbjct: 733 tggctggtttgttgatccattgataaacggacactatccacagataatgcaagatctcgt 792

                                        
Query: 70  gaaagagaggttgcccaagttcactcctg 98
           ||| |||||| |||||| |||||||||||
Sbjct: 793 gaaggagaggctgcccaggttcactcctg 821



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>gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complete cds
          Length = 1909

 Score = 69.9 bits (35), Expect = 1e-09
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                        
Query: 30   tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89
            ||||||| || |||||| | || || |||||||| ||||||||||| ||| |||||||||
Sbjct: 1011 tgataaatggacattactcgcagataatgcaagatcttgtgaaagataggctgcccaagt 1070

                     
Query: 90   tcactcctg 98
            |||||||||
Sbjct: 1071 tcactcctg 1079



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>gb|AY109400.1| Zea mays CL1052_1 mRNA sequence
          Length = 2031

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 47  ccacanatnatgcaagaccttgtgaaagagaggttgcccaagttcactcctg 98
           ||||| || |||||||| || ||||| |||||| |||||| |||||||||||
Sbjct: 767 ccacagataatgcaagatctcgtgaaggagaggctgcccaggttcactcctg 818



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>gb|AC121957.2| Mus musculus BAC clone RP24-232G13 from 18, complete sequence
          Length = 178929

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 72    aagagaggttgcccaagtt 90
             |||||||||||||||||||
Sbjct: 77678 aagagaggttgcccaagtt 77660



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>emb|AL844581.7| Mouse DNA sequence from clone RP23-146O7 on chromosome 2, complete
              sequence
          Length = 207639

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 75     agaggttgcccaagttcac 93
              |||||||||||||||||||
Sbjct: 103463 agaggttgcccaagttcac 103481


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 475,781
Number of Sequences: 3902068
Number of extensions: 475781
Number of successful extensions: 29143
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29114
Number of HSP's gapped (non-prelim): 29
length of query: 104
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 83
effective length of database: 17,151,101,840
effective search space: 1423541452720
effective search space used: 1423541452720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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