Clone Name | bags9e05 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009232.1| Triticum aestivum clone wle1n.pk0102.g9:fis, full insert mRNA sequence Length = 1023 Score = 157 bits (79), Expect = 7e-36 Identities = 91/96 (94%) Strand = Plus / Plus Query: 1 cttccatgntggctggtttgtcgacccgctgataaacgggcattacccacanatnatgca 60 |||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||| Sbjct: 241 cttccatgttggctggtttgtcgacccgctgataaacgggcattacccgcagataatgca 300 Query: 61 agaccttgtgaaagagaggttgcccaagttcactcc 96 |||||||||||||||||||||||||| ||||||||| Sbjct: 301 agaccttgtgaaagagaggttgcccaggttcactcc 336
>ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1849 Score = 77.8 bits (39), Expect = 5e-12 Identities = 61/69 (88%) Strand = Plus / Plus Query: 30 tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89 ||||||| || |||||||| || || |||||||| ||||||||||| ||| ||||||||| Sbjct: 1000 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 1059 Query: 90 tcactcctg 98 ||||||||| Sbjct: 1060 tcactcctg 1068
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08 map R2847, complete sequence Length = 100918 Score = 77.8 bits (39), Expect = 5e-12 Identities = 61/69 (88%) Strand = Plus / Minus Query: 30 tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89 ||||||| || |||||||| || || |||||||| ||||||||||| ||| ||||||||| Sbjct: 82395 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 82336 Query: 90 tcactcctg 98 ||||||||| Sbjct: 82335 tcactcctg 82327
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 77.8 bits (39), Expect = 5e-12 Identities = 61/69 (88%) Strand = Plus / Minus Query: 30 tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89 ||||||| || |||||||| || || |||||||| ||||||||||| ||| ||||||||| Sbjct: 27946667 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 27946608 Query: 90 tcactcctg 98 ||||||||| Sbjct: 27946607 tcactcctg 27946599
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete sequence Length = 133889 Score = 77.8 bits (39), Expect = 5e-12 Identities = 61/69 (88%) Strand = Plus / Plus Query: 30 tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89 ||||||| || |||||||| || || |||||||| ||||||||||| ||| ||||||||| Sbjct: 78359 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 78418 Query: 90 tcactcctg 98 ||||||||| Sbjct: 78419 tcactcctg 78427
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 77.8 bits (39), Expect = 5e-12 Identities = 61/69 (88%) Strand = Plus / Minus Query: 30 tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89 ||||||| || |||||||| || || |||||||| ||||||||||| ||| ||||||||| Sbjct: 28037991 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 28037932 Query: 90 tcactcctg 98 ||||||||| Sbjct: 28037931 tcactcctg 28037923
>dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H02, full insert sequence Length = 1846 Score = 77.8 bits (39), Expect = 5e-12 Identities = 61/69 (88%) Strand = Plus / Plus Query: 30 tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89 ||||||| || |||||||| || || |||||||| ||||||||||| ||| ||||||||| Sbjct: 1003 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 1062 Query: 90 tcactcctg 98 ||||||||| Sbjct: 1063 tcactcctg 1071
>dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full insert sequence Length = 1857 Score = 77.8 bits (39), Expect = 5e-12 Identities = 61/69 (88%) Strand = Plus / Plus Query: 30 tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89 ||||||| || |||||||| || || |||||||| ||||||||||| ||| ||||||||| Sbjct: 1002 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 1061 Query: 90 tcactcctg 98 ||||||||| Sbjct: 1062 tcactcctg 1070
>dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021K07, full insert sequence Length = 1894 Score = 77.8 bits (39), Expect = 5e-12 Identities = 61/69 (88%) Strand = Plus / Plus Query: 30 tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89 ||||||| || |||||||| || || |||||||| ||||||||||| ||| ||||||||| Sbjct: 1006 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 1065 Query: 90 tcactcctg 98 ||||||||| Sbjct: 1066 tcactcctg 1074
>dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G08, full insert sequence Length = 1302 Score = 77.8 bits (39), Expect = 5e-12 Identities = 61/69 (88%) Strand = Plus / Plus Query: 30 tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89 ||||||| || |||||||| || || |||||||| ||||||||||| ||| ||||||||| Sbjct: 447 tgataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgcccaagt 506 Query: 90 tcactcctg 98 ||||||||| Sbjct: 507 tcactcctg 515
>gb|BT016439.1| Zea mays clone Contig272 mRNA sequence Length = 1566 Score = 69.9 bits (35), Expect = 1e-09 Identities = 75/89 (84%) Strand = Plus / Plus Query: 10 tggctggtttgtcgacccgctgataaacgggcattacccacanatnatgcaagaccttgt 69 |||||||||||| || || |||||||||| || || ||||| || |||||||| || || Sbjct: 733 tggctggtttgttgatccattgataaacggacactatccacagataatgcaagatctcgt 792 Query: 70 gaaagagaggttgcccaagttcactcctg 98 ||| |||||| |||||| ||||||||||| Sbjct: 793 gaaggagaggctgcccaggttcactcctg 821
>gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complete cds Length = 1909 Score = 69.9 bits (35), Expect = 1e-09 Identities = 60/69 (86%) Strand = Plus / Plus Query: 30 tgataaacgggcattacccacanatnatgcaagaccttgtgaaagagaggttgcccaagt 89 ||||||| || |||||| | || || |||||||| ||||||||||| ||| ||||||||| Sbjct: 1011 tgataaatggacattactcgcagataatgcaagatcttgtgaaagataggctgcccaagt 1070 Query: 90 tcactcctg 98 ||||||||| Sbjct: 1071 tcactcctg 1079
>gb|AY109400.1| Zea mays CL1052_1 mRNA sequence Length = 2031 Score = 52.0 bits (26), Expect = 3e-04 Identities = 45/52 (86%) Strand = Plus / Plus Query: 47 ccacanatnatgcaagaccttgtgaaagagaggttgcccaagttcactcctg 98 ||||| || |||||||| || ||||| |||||| |||||| ||||||||||| Sbjct: 767 ccacagataatgcaagatctcgtgaaggagaggctgcccaggttcactcctg 818
>gb|AC121957.2| Mus musculus BAC clone RP24-232G13 from 18, complete sequence Length = 178929 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 aagagaggttgcccaagtt 90 ||||||||||||||||||| Sbjct: 77678 aagagaggttgcccaagtt 77660
>emb|AL844581.7| Mouse DNA sequence from clone RP23-146O7 on chromosome 2, complete sequence Length = 207639 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 75 agaggttgcccaagttcac 93 ||||||||||||||||||| Sbjct: 103463 agaggttgcccaagttcac 103481 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 475,781 Number of Sequences: 3902068 Number of extensions: 475781 Number of successful extensions: 29143 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29114 Number of HSP's gapped (non-prelim): 29 length of query: 104 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 83 effective length of database: 17,151,101,840 effective search space: 1423541452720 effective search space used: 1423541452720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)