Clone Name | bags9e03 |
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Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 232 bits (117), Expect = 9e-58 Identities = 230/268 (85%) Strand = Plus / Minus Query: 2 acgccctggctgcatacttgaatgcactctcgaggnaggtagatcatgtaccatccaagg 61 |||| |||||||||||||| ||||| |||||| |||| || || |||||||| |||| Sbjct: 23230724 acgcactggctgcatacttcaatgcggtctcgaccgaggtggagcacgtaccatcaaagg 23230665 Query: 62 tatccatcggtgctctcctgtcgaaacaagggcccaagtatctccctgtggcgaggagct 121 |||||||||| || |||||||| |||||||| |||||||||||||| || || ||||||| Sbjct: 23230664 tatccatcggcgccctcctgtccaaacaaggccccaagtatctccccgtcgcaaggagct 23230605 Query: 122 atctctcggatgccctaaggctcgagcctacgaaccggatggcctggttctacctaggac 181 |||||||| |||||||||| |||||| |||||||||||||| |||||||||||||| Sbjct: 23230604 tcctctcggacgccctaaggcacgagccgacgaaccggatggcatggttctacctaggga 23230545 Query: 182 aggtccacaagcatgacgggaggctagctgatgccgccgattgctttcaggcggcctcga 241 |||||||||||||||| || |||||||||||||| || || ||||| ||||| ||||| | Sbjct: 23230544 aggtccacaagcatgatggcaggctagctgatgctgctgactgcttccaggcagcctcaa 23230485 Query: 242 tgctcgaggaatcggacccggtagaaag 269 |||| |||||||| ||||| ||||||| Sbjct: 23230484 tgcttgaggaatcagacccaatagaaag 23230457
>dbj|AK073968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071N15, full insert sequence Length = 2596 Score = 232 bits (117), Expect = 9e-58 Identities = 230/268 (85%) Strand = Plus / Plus Query: 2 acgccctggctgcatacttgaatgcactctcgaggnaggtagatcatgtaccatccaagg 61 |||| |||||||||||||| ||||| |||||| |||| || || |||||||| |||| Sbjct: 2006 acgcactggctgcatacttcaatgcggtctcgaccgaggtggagcacgtaccatcaaagg 2065 Query: 62 tatccatcggtgctctcctgtcgaaacaagggcccaagtatctccctgtggcgaggagct 121 |||||||||| || |||||||| |||||||| |||||||||||||| || || ||||||| Sbjct: 2066 tatccatcggcgccctcctgtccaaacaaggccccaagtatctccccgtcgcaaggagct 2125 Query: 122 atctctcggatgccctaaggctcgagcctacgaaccggatggcctggttctacctaggac 181 |||||||| |||||||||| |||||| |||||||||||||| |||||||||||||| Sbjct: 2126 tcctctcggacgccctaaggcacgagccgacgaaccggatggcatggttctacctaggga 2185 Query: 182 aggtccacaagcatgacgggaggctagctgatgccgccgattgctttcaggcggcctcga 241 |||||||||||||||| || |||||||||||||| || || ||||| ||||| ||||| | Sbjct: 2186 aggtccacaagcatgatggcaggctagctgatgctgctgactgcttccaggcagcctcaa 2245 Query: 242 tgctcgaggaatcggacccggtagaaag 269 |||| |||||||| ||||| ||||||| Sbjct: 2246 tgcttgaggaatcagacccaatagaaag 2273
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 232 bits (117), Expect = 9e-58 Identities = 230/268 (85%) Strand = Plus / Minus Query: 2 acgccctggctgcatacttgaatgcactctcgaggnaggtagatcatgtaccatccaagg 61 |||| |||||||||||||| ||||| |||||| |||| || || |||||||| |||| Sbjct: 23158915 acgcactggctgcatacttcaatgcggtctcgaccgaggtggagcacgtaccatcaaagg 23158856 Query: 62 tatccatcggtgctctcctgtcgaaacaagggcccaagtatctccctgtggcgaggagct 121 |||||||||| || |||||||| |||||||| |||||||||||||| || || ||||||| Sbjct: 23158855 tatccatcggcgccctcctgtccaaacaaggccccaagtatctccccgtcgcaaggagct 23158796 Query: 122 atctctcggatgccctaaggctcgagcctacgaaccggatggcctggttctacctaggac 181 |||||||| |||||||||| |||||| |||||||||||||| |||||||||||||| Sbjct: 23158795 tcctctcggacgccctaaggcacgagccgacgaaccggatggcatggttctacctaggga 23158736 Query: 182 aggtccacaagcatgacgggaggctagctgatgccgccgattgctttcaggcggcctcga 241 |||||||||||||||| || |||||||||||||| || || ||||| ||||| ||||| | Sbjct: 23158735 aggtccacaagcatgatggcaggctagctgatgctgctgactgcttccaggcagcctcaa 23158676 Query: 242 tgctcgaggaatcggacccggtagaaag 269 |||| |||||||| ||||| ||||||| Sbjct: 23158675 tgcttgaggaatcagacccaatagaaag 23158648
>emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa0011B18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 168063 Score = 232 bits (117), Expect = 9e-58 Identities = 230/268 (85%) Strand = Plus / Minus Query: 2 acgccctggctgcatacttgaatgcactctcgaggnaggtagatcatgtaccatccaagg 61 |||| |||||||||||||| ||||| |||||| |||| || || |||||||| |||| Sbjct: 43842 acgcactggctgcatacttcaatgcggtctcgaccgaggtggagcacgtaccatcaaagg 43783 Query: 62 tatccatcggtgctctcctgtcgaaacaagggcccaagtatctccctgtggcgaggagct 121 |||||||||| || |||||||| |||||||| |||||||||||||| || || ||||||| Sbjct: 43782 tatccatcggcgccctcctgtccaaacaaggccccaagtatctccccgtcgcaaggagct 43723 Query: 122 atctctcggatgccctaaggctcgagcctacgaaccggatggcctggttctacctaggac 181 |||||||| |||||||||| |||||| |||||||||||||| |||||||||||||| Sbjct: 43722 tcctctcggacgccctaaggcacgagccgacgaaccggatggcatggttctacctaggga 43663 Query: 182 aggtccacaagcatgacgggaggctagctgatgccgccgattgctttcaggcggcctcga 241 |||||||||||||||| || |||||||||||||| || || ||||| ||||| ||||| | Sbjct: 43662 aggtccacaagcatgatggcaggctagctgatgctgctgactgcttccaggcagcctcaa 43603 Query: 242 tgctcgaggaatcggacccggtagaaag 269 |||| |||||||| ||||| ||||||| Sbjct: 43602 tgcttgaggaatcagacccaatagaaag 43575
>gb|AY107020.1| Zea mays PCO062840 mRNA sequence Length = 1070 Score = 202 bits (102), Expect = 8e-49 Identities = 221/261 (84%) Strand = Plus / Plus Query: 10 gctgcatacttgaatgcactctcgaggnaggtagatcatgtaccatccaaggtatccatc 69 ||||||||||| ||||| |||| | | |||| || || || ||||||||||| || ||| Sbjct: 295 gctgcatacttcaatgccatctctatggaggttgagcacgtcccatccaaggtctctatc 354 Query: 70 ggtgctctcctgtcgaaacaagggcccaagtatctccctgtggcgaggagctatctctcg 129 ||||||||||| || |||||||||||||||| || || ||||||||| | | ||||| Sbjct: 355 ggtgctctcctctctaaacaagggcccaagttcctaccagtggcgaggtgtttcctctcc 414 Query: 130 gatgccctaaggctcgagcctacgaaccggatggcctggttctacctaggacaggtccac 189 |||||||| ||||| || || |||||||| ||||||||||||||||| || |||| ||| Sbjct: 415 gatgccctgaggcttgaacccacgaaccgcatggcctggttctaccttggggaggttcac 474 Query: 190 aagcatgacgggaggctagctgatgccgccgattgctttcaggcggcctcgatgctcgag 249 ||||| ||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct: 475 aagcaggacggcaggctagctgatgccgccgactgcttccaggcggcctcaatgctcgag 534 Query: 250 gaatcggacccggtagaaagt 270 || ||||| || ||||||||| Sbjct: 535 gactcggatcctgtagaaagt 555
>emb|Z81498.1|CEF11A6 Caenorhabditis elegans Cosmid F11A6, complete sequence Length = 34727 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctttttt 356 |||||||||||||||||||||||| Sbjct: 21540 ttttccttctcttcctcctttttt 21563
>gb|AY509906.1| Homo sapiens interleukin 26 (IL26) gene, complete cds Length = 33991 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 333 ttttccttctcttcctccttttt 355 ||||||||||||||||||||||| Sbjct: 15420 ttttccttctcttcctccttttt 15442
>gb|AC129416.1| Homo sapiens 12 BAC RP11-464G3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 139995 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 334 tttccttctcttcctcctttttt 356 ||||||||||||||||||||||| Sbjct: 39442 tttccttctcttcctcctttttt 39464
>gb|AC007458.14| Homo sapiens 12 BAC RP11-444B24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190961 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 333 ttttccttctcttcctccttttt 355 ||||||||||||||||||||||| Sbjct: 157147 ttttccttctcttcctccttttt 157125
>gb|AC007447.6|AC007447 Homo sapiens, clone hRPK.76_A_1, complete sequence Length = 155210 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 334 tttccttctcttcctcctttttt 356 ||||||||||||||||||||||| Sbjct: 99050 tttccttctcttcctcctttttt 99072
>gb|AY323950.1| Oryza sativa (indica cultivar-group) calmodulin-binding protein mRNA, complete cds Length = 2278 Score = 44.1 bits (22), Expect = 0.44 Identities = 123/157 (78%) Strand = Plus / Plus Query: 8 tggctgcatacttgaatgcactctcgaggnaggtagatcatgtaccatccaaggtatcca 67 ||||||| ||| | |||||| |||||| || |||| ||||| ||||||||||| ||| Sbjct: 1923 tggctgcctacgtcaatgcattctcgatagagctagagcatgttccatccaaggtggcca 1982 Query: 68 tcggtgctctcctgtcgaaacaagggcccaagtatctccctgtggcgaggagctatctct 127 | ||||| || || | || |||||| | | ||||||||||| ||||| ||| |||| Sbjct: 1983 ttggtgcacttctctgcaagcaagggtcaaggtatctccctgcagcgagatgcttcctct 2042 Query: 128 cggatgccctaaggctcgagcctacgaaccggatggc 164 ||||||| || || | |||||||||||| ||||||| Sbjct: 2043 cggatgcactgagaattgagcctacgaacaggatggc 2079
>gb|AC160472.4| Mus musculus BAC clone RP24-97J22 from chromosome 1, complete sequence Length = 170576 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 333 ttttccttctcttcctcctttt 354 |||||||||||||||||||||| Sbjct: 112321 ttttccttctcttcctcctttt 112300
>gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0047M04, complete sequence Length = 109523 Score = 44.1 bits (22), Expect = 0.44 Identities = 123/157 (78%) Strand = Plus / Minus Query: 8 tggctgcatacttgaatgcactctcgaggnaggtagatcatgtaccatccaaggtatcca 67 ||||||| ||| | |||||| |||||| || |||| ||||| ||||||||||| ||| Sbjct: 66774 tggctgcctacgtcaatgcattctcgatagagctagagcatgttccatccaaggtggcca 66715 Query: 68 tcggtgctctcctgtcgaaacaagggcccaagtatctccctgtggcgaggagctatctct 127 | ||||| || || | || |||||| | | ||||||||||| ||||| ||| |||| Sbjct: 66714 ttggtgcacttctctgcaagcaagggtcaaggtatctccctgcagcgagatgcttcctct 66655 Query: 128 cggatgccctaaggctcgagcctacgaaccggatggc 164 ||||||| || || | |||||||||||| ||||||| Sbjct: 66654 cggatgcactgagaattgagcctacgaacaggatggc 66618
>dbj|AK053404.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130014H08 product:hypothetical Ankyrin repeat profile/Ankyrin-repeat/Ankyrin repeat region circular profile/Yeast DNA-binding domain containing protein, full insert sequence Length = 2533 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctttt 354 |||||||||||||||||||||| Sbjct: 1278 ttttccttctcttcctcctttt 1299
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.44 Identities = 123/157 (78%) Strand = Plus / Minus Query: 8 tggctgcatacttgaatgcactctcgaggnaggtagatcatgtaccatccaaggtatcca 67 ||||||| ||| | |||||| |||||| || |||| ||||| ||||||||||| ||| Sbjct: 27115721 tggctgcctacgtcaatgcattctcgatagagctagagcatgttccatccaaggtggcca 27115662 Query: 68 tcggtgctctcctgtcgaaacaagggcccaagtatctccctgtggcgaggagctatctct 127 | ||||| || || | || |||||| | | ||||||||||| ||||| ||| |||| Sbjct: 27115661 ttggtgcacttctctgcaagcaagggtcaaggtatctccctgcagcgagatgcttcctct 27115602 Query: 128 cggatgccctaaggctcgagcctacgaaccggatggc 164 ||||||| || || | |||||||||||| ||||||| Sbjct: 27115601 cggatgcactgagaattgagcctacgaacaggatggc 27115565
>dbj|AK071439.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093A04, full insert sequence Length = 2448 Score = 44.1 bits (22), Expect = 0.44 Identities = 123/157 (78%) Strand = Plus / Plus Query: 8 tggctgcatacttgaatgcactctcgaggnaggtagatcatgtaccatccaaggtatcca 67 ||||||| ||| | |||||| |||||| || |||| ||||| ||||||||||| ||| Sbjct: 1855 tggctgcctacgtcaatgcattctcgatagagctagagcatgttccatccaaggtggcca 1914 Query: 68 tcggtgctctcctgtcgaaacaagggcccaagtatctccctgtggcgaggagctatctct 127 | ||||| || || | || |||||| | | ||||||||||| ||||| ||| |||| Sbjct: 1915 ttggtgcacttctctgcaagcaagggtcaaggtatctccctgcagcgagatgcttcctct 1974 Query: 128 cggatgccctaaggctcgagcctacgaaccggatggc 164 ||||||| || || | |||||||||||| ||||||| Sbjct: 1975 cggatgcactgagaattgagcctacgaacaggatggc 2011
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.44 Identities = 123/157 (78%) Strand = Plus / Minus Query: 8 tggctgcatacttgaatgcactctcgaggnaggtagatcatgtaccatccaaggtatcca 67 ||||||| ||| | |||||| |||||| || |||| ||||| ||||||||||| ||| Sbjct: 27442774 tggctgcctacgtcaatgcattctcgatagagctagagcatgttccatccaaggtggcca 27442715 Query: 68 tcggtgctctcctgtcgaaacaagggcccaagtatctccctgtggcgaggagctatctct 127 | ||||| || || | || |||||| | | ||||||||||| ||||| ||| |||| Sbjct: 27442714 ttggtgcacttctctgcaagcaagggtcaaggtatctccctgcagcgagatgcttcctct 27442655 Query: 128 cggatgccctaaggctcgagcctacgaaccggatggc 164 ||||||| || || | |||||||||||| ||||||| Sbjct: 27442654 cggatgcactgagaattgagcctacgaacaggatggc 27442618
>gb|AC151572.2| Mus musculus BAC clone RP23-388I22 from 1, complete sequence Length = 187409 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctttt 354 |||||||||||||||||||||| Sbjct: 178225 ttttccttctcttcctcctttt 178246
>gb|AC120398.10| Mus musculus chromosome 3, clone RP24-333H9, complete sequence Length = 153725 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 333 ttttccttctcttcctccttttttg 357 ||||||||||| ||||||||||||| Sbjct: 146507 ttttccttctcctcctccttttttg 146483
>ref|XM_586393.2| PREDICTED: Bos taurus similar to Baculoviral IAP repeat-containing protein 2 (Inhibitor of apoptosis protein 2) (HIAP2) (HIAP-2) (C-IAP1) (TNFR2-TRAF signaling complex protein 2) (IAP homolog B) (LOC539314), partial mRNA Length = 853 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 334 tttccttctcttcctcctttt 354 ||||||||||||||||||||| Sbjct: 359 tttccttctcttcctcctttt 339
>ref|XM_613176.2| PREDICTED: Bos taurus calcium channel, voltage-dependent, P/Q type, alpha 1A subunit (CACNA1A), partial mRNA Length = 6720 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 cttctcttcctccttttttgg 358 ||||||||||||||||||||| Sbjct: 3849 cttctcttcctccttttttgg 3829
>gb|AC140554.3| Mus musculus BAC clone RP23-151C18 from chromosome 18, complete sequence Length = 215716 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 334 tttccttctcttcctcctttt 354 ||||||||||||||||||||| Sbjct: 51735 tttccttctcttcctcctttt 51715
>gb|AC130204.4| Mus musculus BAC clone RP24-427M16 from chromosome 18, complete sequence Length = 167394 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 334 tttccttctcttcctcctttt 354 ||||||||||||||||||||| Sbjct: 110245 tttccttctcttcctcctttt 110225
>gb|AC125040.4| Mus musculus BAC clone RP23-335C9 from chromosome 3, complete sequence Length = 203863 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 333 ttttccttctcttcctccttttttg 357 ||||||||||| ||||||||||||| Sbjct: 191582 ttttccttctcctcctccttttttg 191606
>gb|AC122023.3| Mus musculus BAC clone RP24-372O13 from 12, complete sequence Length = 179947 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 ttccttctcttcctccttttt 355 ||||||||||||||||||||| Sbjct: 76614 ttccttctcttcctccttttt 76594
>gb|AC153583.10| Mus musculus 6 BAC RP23-349K15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 196821 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 tccttctcttcctcctttttt 356 ||||||||||||||||||||| Sbjct: 67156 tccttctcttcctcctttttt 67136
>gb|AC108436.5| Mus musculus chromosome 8, clone RP23-230G11, complete sequence Length = 185534 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 336 tccttctcttcctccttttttgggg 360 |||||||| |||||||||||||||| Sbjct: 112182 tccttctcctcctccttttttgggg 112158
>emb|Z97055.1|HS388M5 Human DNA sequence from clone RP3-388M5 on chromosome 22, complete sequence Length = 177568 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 tccttctcttcctcctttttt 356 ||||||||||||||||||||| Sbjct: 43003 tccttctcttcctcctttttt 42983
>emb|AL121833.10|HSDJ131H7 Human DNA sequence from clone RP1-131H7 on chromosome 6q15-16.2 Contains the 3' end of the GABRR2 gene for amma-aminobutyric acid (GABA) receptor rho 2, a tubulin beta poplypeptide (TUBB) pseudogene and the 3' end of the NCUBE1 gene for non-canonical ubiquitin conjugating enzyme 1, complete sequence Length = 96523 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 ttccttctcttcctccttttt 355 ||||||||||||||||||||| Sbjct: 73838 ttccttctcttcctccttttt 73818
>gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, complete sequence Length = 218714 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 tccttctcttcctcctttttt 356 ||||||||||||||||||||| Sbjct: 141692 tccttctcttcctcctttttt 141672
>emb|AL022337.19|HS796E4 Human DNA sequence from clone CTA-796E4 on chromosome 22q11.22-12.1, complete sequence Length = 134205 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 333 ttttccttctcttcctccttttttg 357 ||||| ||||||||||||||||||| Sbjct: 95427 ttttctttctcttcctccttttttg 95403
>gb|AC162858.6| Mus musculus chromosome 8, clone RP23-117O14, complete sequence Length = 167086 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 336 tccttctcttcctccttttttgggg 360 |||||||| |||||||||||||||| Sbjct: 31120 tccttctcctcctccttttttgggg 31144
>gb|AC105987.21| Mus musculus chromosome 5, clone RP24-446I1, complete sequence Length = 192043 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 tccttctcttcctcctttttt 356 ||||||||||||||||||||| Sbjct: 122977 tccttctcttcctcctttttt 122997
>emb|AL662803.11| Mouse DNA sequence from clone RP23-215N10 on chromosome 11 Contains a novel gene, complete sequence Length = 155034 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 ttccttctcttcctccttttt 355 ||||||||||||||||||||| Sbjct: 46242 ttccttctcttcctccttttt 46262
>dbj|AK028627.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732420C16 product:unclassifiable, full insert sequence Length = 3227 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 334 tttccttctcttcctcctttt 354 ||||||||||||||||||||| Sbjct: 2070 tttccttctcttcctcctttt 2090
>gb|AC005519.3|AC005519 Homo sapiens PAC clone RP5-919J22 from 14q24.3, complete sequence Length = 163983 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 tccttctcttcctcctttttt 356 ||||||||||||||||||||| Sbjct: 12671 tccttctcttcctcctttttt 12651
>gb|AC005479.2|AC005479 Homo sapiens PAC clone RP3-449M8 from 14q24.3, complete sequence Length = 140425 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 tccttctcttcctcctttttt 356 ||||||||||||||||||||| Sbjct: 130988 tccttctcttcctcctttttt 130968
>emb|BX649534.9| Zebrafish DNA sequence from clone DKEY-31F5 in linkage group 4, complete sequence Length = 205347 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 333 ttttccttctcttcctccttt 353 ||||||||||||||||||||| Sbjct: 118982 ttttccttctcttcctccttt 119002
>gb|AC153868.3| Mus musculus BAC RP23-384D16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 211603 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 tccttctcttcctcctttttt 356 ||||||||||||||||||||| Sbjct: 63690 tccttctcttcctcctttttt 63710
>gb|AC139320.4| Mus musculus BAC clone RP24-410G8 from 9, complete sequence Length = 176888 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 ttccttctcttcctccttttt 355 ||||||||||||||||||||| Sbjct: 120132 ttccttctcttcctccttttt 120152
>gb|AC121298.10| Mus musculus chromosome 5, clone RP23-377E6, complete sequence Length = 194045 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 332 gttttccttctcttcctccttttt 355 |||||| ||||||||||||||||| Sbjct: 171942 gttttctttctcttcctccttttt 171919
>gb|AC163333.6| Mus musculus chromosome 1, clone RP24-98O21, complete sequence Length = 128643 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 333 ttttccttctcttcctcctttttt 356 |||| ||||||||||||||||||| Sbjct: 89043 tttttcttctcttcctcctttttt 89020
>gb|AC123738.8| Mus musculus, clone RP24-67N17, complete sequence Length = 163442 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 1435 ttttccttctcttcctcctt 1454
>gb|AC119880.11| Mus musculus chromosome 7, clone RP24-428H4, complete sequence Length = 187158 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 102685 ttttccttctcttcctcctt 102666
>gb|AC110235.13| Mus musculus chromosome 9, clone RP23-100M12, complete sequence Length = 220755 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cttctcttcctccttttttg 357 |||||||||||||||||||| Sbjct: 105164 cttctcttcctccttttttg 105183
>gb|AC068663.5| Mus musculus strain C57BL6/J chromosome 5 clone RP23-280D18, complete sequence Length = 221134 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctttttt 356 ||||||||||||| |||||||||| Sbjct: 151242 ttttccttctctttctcctttttt 151265
>gb|AC102392.8| Mus musculus chromosome 3, clone RP24-122I22, complete sequence Length = 201067 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 108324 ttttccttctcttcctcctt 108343
>gb|AC127315.4| Mus musculus BAC clone RP23-218F21 from chromosome 8, complete sequence Length = 207577 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctttttt 356 ||||||||||||||||||| |||| Sbjct: 69998 ttttccttctcttcctcctctttt 70021
>gb|AC130218.4| Mus musculus BAC clone RP23-121N18 from chromosome 18, complete sequence Length = 213673 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 18118 ttttccttctcttcctcctt 18137
>gb|AC132340.3| Mus musculus BAC clone RP24-166O10 from chromosome 1, complete sequence Length = 146111 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 333 ttttccttctcttcctcctttttt 356 |||| ||||||||||||||||||| Sbjct: 17527 tttttcttctcttcctcctttttt 17504
>gb|AC139157.4| Mus musculus BAC clone RP24-152G20 from chromosome 18, complete sequence Length = 133869 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 72781 ttttccttctcttcctcctt 72800
>gb|AC127412.4| Mus musculus BAC clone RP23-234O14 from chromosome 16, complete sequence Length = 225685 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctttttt 356 ||||||| |||||||||||||||| Sbjct: 17257 ttttcctcctcttcctcctttttt 17280
>gb|AC113541.10| Mus musculus chromosome 5, clone RP23-185N2, complete sequence Length = 210222 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 333 ttttccttctcttcctcctttttt 356 ||||||||||||| |||||||||| Sbjct: 46136 ttttccttctctttctcctttttt 46113
>gb|AC158751.7| Mus musculus chromosome 7, clone RP23-413C19, complete sequence Length = 198442 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctttttt 356 ||||||| |||||||||||||||| Sbjct: 45299 ttttcctcctcttcctcctttttt 45322
>emb|AL031779.5|HS445N2 Human DNA sequence from clone RP3-445N2 on chromosome 6p12.1-21.1 Contains the 5' end of the COL21A1 gene for collagen, type XXI, alpha 1 (collagen XXI, collagen, type XX, alpha 1, COLA1L, COL20A1, DKFZp564B052) and part of a novel gene, complete sequence Length = 101010 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 18905 ttttccttctcttcctcctt 18924
>emb|AL109984.14|HSJ831D17 Human DNA sequence from clone RP5-831D17 on chromosome 20 Contains the 3' end of ZFP64 gene for zinc finger protein 64 homolog (mouse), an endoplasmatic reticulum protein ERP29 (ERP31, ERP28) pseudogene and two CpG islands, complete sequence Length = 122764 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 32445 ttttccttctcttcctcctt 32464
>emb|AL023653.1|HS753P9 Human DNA sequence from clone RP4-753P9 on chromosome Xq25-26.1 Contains the XPNPEP2 gene for X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound and the CXorf9 gene for chromosome X open reading frame 9, complete sequence Length = 116561 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 332 gttttccttctcttcctccttttt 355 |||||||||||| ||||||||||| Sbjct: 53904 gttttccttctcctcctccttttt 53881
>gb|AC112161.9| Mus Musculus chromosome 9 BAC clone MGS1-117K9 ES cell line, Complete Sequence, complete sequence Length = 115135 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 cttctcttcctccttttttg 357 |||||||||||||||||||| Sbjct: 18585 cttctcttcctccttttttg 18566
>gb|AC163090.5| Mus musculus chromosome 8, clone RP23-457I3, complete sequence Length = 195979 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 133812 ttttccttctcttcctcctt 133831
>emb|AJ720753.1| Gallus gallus mRNA for hypothetical protein, clone 24m10 Length = 2146 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 tgctctcctgtcgaaacaagggcc 95 ||||||||||| |||||||||||| Sbjct: 1505 tgctctcctgtggaaacaagggcc 1528
>emb|AJ297357.1|HSA297357 Homo sapiens partial LIMD1 gene for LIM domains containing protein 1 and KIAA0851 gene Length = 87434 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ccttctcttcctcctttttt 356 |||||||||||||||||||| Sbjct: 65063 ccttctcttcctcctttttt 65082
>ref|NM_001006311.1| Gallus gallus nuclear distribution gene C homolog (A. nidulans) (NUDC), mRNA Length = 2146 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 tgctctcctgtcgaaacaagggcc 95 ||||||||||| |||||||||||| Sbjct: 1505 tgctctcctgtggaaacaagggcc 1528
>gb|AC020923.9| Homo sapiens chromosome 5 clone CTD-2123J17, complete sequence Length = 159973 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ttccttctcttcctcctttt 354 |||||||||||||||||||| Sbjct: 147832 ttccttctcttcctcctttt 147851
>gb|AC117944.2| Homo sapiens chromosome 1 clone RP4-653E17, complete sequence Length = 55673 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ttccttctcttcctcctttt 354 |||||||||||||||||||| Sbjct: 51346 ttccttctcttcctcctttt 51327
>gb|AF195953.2| Homo sapiens membrane-bound aminopeptidase P (XNPEP2) gene, complete cds Length = 206618 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 332 gttttccttctcttcctccttttt 355 |||||||||||| ||||||||||| Sbjct: 143934 gttttccttctcctcctccttttt 143911
>gb|AC174806.2| Mus musculus BAC clone RP24-526I8 from chromosome y, complete sequence Length = 155247 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 130264 ttttccttctcttcctcctt 130245
>gb|AC098476.2| Homo sapiens chromosome 3 clone RP11-697K23, complete sequence Length = 176741 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ccttctcttcctcctttttt 356 |||||||||||||||||||| Sbjct: 71189 ccttctcttcctcctttttt 71208
>gb|AC008619.7| Homo sapiens chromosome 5 clone CTB-147C13, complete sequence Length = 91048 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ttccttctcttcctcctttt 354 |||||||||||||||||||| Sbjct: 45879 ttccttctcttcctcctttt 45860
>emb|CR386216.1| Gallus gallus finished cDNA, clone ChEST251d7 Length = 1016 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 tgctctcctgtcgaaacaagggcc 95 ||||||||||| |||||||||||| Sbjct: 400 tgctctcctgtggaaacaagggcc 423
>emb|CR353376.1| Gallus gallus finished cDNA, clone ChEST23f6 Length = 1104 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 tgctctcctgtcgaaacaagggcc 95 ||||||||||| |||||||||||| Sbjct: 478 tgctctcctgtggaaacaagggcc 501
>gb|AC115914.6| Mus musculus chromosome 8, clone RP24-487J5, complete sequence Length = 163170 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctttttt 356 ||||||||||||||||||| |||| Sbjct: 109433 ttttccttctcttcctcctctttt 109456
>gb|AC073218.6| Homo sapiens BAC clone RP11-529E15 from 2, complete sequence Length = 150263 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 tccttctcttcctccttttt 355 |||||||||||||||||||| Sbjct: 53086 tccttctcttcctccttttt 53067
>gb|AC087188.5| Homo sapiens chromosome 16 clone RP11-345M22, complete sequence Length = 187870 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 tccttctcttcctccttttt 355 |||||||||||||||||||| Sbjct: 86599 tccttctcttcctccttttt 86580
>gb|AC138303.4| Mus musculus BAC clone RP23-43G12 from chromosome 12, complete sequence Length = 207693 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 72613 ttttccttctcttcctcctt 72594
>gb|AC105050.2| Homo sapiens BAC clone RP11-106G23 from 2, complete sequence Length = 104017 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 tccttctcttcctccttttt 355 |||||||||||||||||||| Sbjct: 86626 tccttctcttcctccttttt 86607
>emb|BX842610.3| Mouse DNA sequence from clone RP24-16C11 on chromosome 4, complete sequence Length = 51549 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 333 ttttccttctcttcctccttttttgggg 360 ||||| ||||| |||||||||||||||| Sbjct: 27748 ttttctttctcctcctccttttttgggg 27721
>emb|AJ289880.1|HSA289880 Homo sapiens KIAA0851 gene (partial), XT3 gene and LZTFL1 gene Length = 142281 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ccttctcttcctcctttttt 356 |||||||||||||||||||| Sbjct: 9880 ccttctcttcctcctttttt 9899
>gb|AC132132.4| Mus musculus BAC clone RP23-235K2 from 8, complete sequence Length = 198321 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ttccttctcttcctcctttt 354 |||||||||||||||||||| Sbjct: 105382 ttccttctcttcctcctttt 105401
>gb|AC120123.19| Mus musculus chromosome 7, clone RP23-152B12, complete sequence Length = 229054 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctttttt 356 ||||||| |||||||||||||||| Sbjct: 223548 ttttcctcctcttcctcctttttt 223571
>gb|AC090655.63| Mus musculus strain C57BL/6J clone rp23-382i12 map 4, complete sequence Length = 264975 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 agttttccttctcttcctcc 350 |||||||||||||||||||| Sbjct: 117958 agttttccttctcttcctcc 117977 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 agttttccttctcttcctcc 350 |||||||||||||||||||| Sbjct: 40541 agttttccttctcttcctcc 40560
>emb|AL133162.4|CNS01DU5 Human chromosome 14 DNA sequence BAC C-2591A6 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 196431 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 38271 ttttccttctcttcctcctt 38252
>gb|AC149607.6| Mus musculus BAC clone RP23-455C13 from chromosome 7, complete sequence Length = 206284 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ttccttctcttcctcctttt 354 |||||||||||||||||||| Sbjct: 73964 ttccttctcttcctcctttt 73945
>gb|AC122247.5| Mus musculus BAC clone RP23-155D8 from 16, complete sequence Length = 208505 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 333 ttttccttctcttcctcctttttt 356 ||||||| |||||||||||||||| Sbjct: 34949 ttttcctcctcttcctcctttttt 34926
>gb|AC140674.4| Mus musculus BAC clone RP23-368L9 from 3, complete sequence Length = 212854 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 88629 ttttccttctcttcctcctt 88648
>emb|AL772334.16| Mouse DNA sequence from clone RP23-411B7 on chromosome 4, complete sequence Length = 150841 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 agttttccttctcttcctcc 350 |||||||||||||||||||| Sbjct: 94925 agttttccttctcttcctcc 94906 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 agttttccttctcttcctcc 350 |||||||||||||||||||| Sbjct: 17516 agttttccttctcttcctcc 17497
>emb|AL672089.17| Mouse DNA sequence from clone RP23-295D9 on chromosome X, complete sequence Length = 215390 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 102379 ttttccttctcttcctcctt 102398
>emb|AL928658.6| Mouse DNA sequence from clone RP23-238A18 on chromosome 2, complete sequence Length = 220679 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ttccttctcttcctcctttt 354 |||||||||||||||||||| Sbjct: 180132 ttccttctcttcctcctttt 180113
>gb|AC101660.25| Mus musculus chromosome 15, clone RP23-4I22, complete sequence Length = 188464 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 105593 ttttccttctcttcctcctt 105574 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ttttccttctcttcctcctt 352 |||||||||||||||||||| Sbjct: 102079 ttttccttctcttcctcctt 102060 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,549,275 Number of Sequences: 3902068 Number of extensions: 3549275 Number of successful extensions: 86682 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 86430 Number of HSP's gapped (non-prelim): 252 length of query: 508 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 486 effective length of database: 17,147,199,772 effective search space: 8333539089192 effective search space used: 8333539089192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)