ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8o24 |
|---|---|
| Clone Library Name | barley_pub |
>COBL7_ARATH (Q8GZ17) COBRA-like protein 7 precursor| Length = 661 Score = 175 bits (443), Expect(2) = 9e-46 Identities = 84/140 (60%), Positives = 102/140 (72%), Gaps = 6/140 (4%) Frame = +2 Query: 137 AWAQLKHYNVPRPMPCGDFCGVSINWHVSSDFNKGWSARVTLFNWGDVDMANWFAAMVMD 316 AWA LK VP PMPCGD CGVSINWH+++D+ GW+ARVT+FNWG+ D +WF A+ M Sbjct: 479 AWAYLKQRPVPNPMPCGDNCGVSINWHLATDYRGGWTARVTVFNWGETDFVDWFTAVQMK 538 Query: 317 KAYDGFEKAYSFNATAEG----NNTIFMQGLEGLNYLVKQTNMSG--SDYLVPGKQQSVL 478 A GFEKAYSFNA+ G NNTIFM+GL GLNYLV + + + +PGKQQSV+ Sbjct: 539 NAAPGFEKAYSFNASTIGINGKNNTIFMEGLPGLNYLVAERDGENPLKNPRIPGKQQSVM 598 Query: 479 SFTKKPTPDIDVVAGDGFPT 538 SFTKK TP I+V GDGFP+ Sbjct: 599 SFTKKLTPGINVPGGDGFPS 618 Score = 28.1 bits (61), Expect(2) = 9e-46 Identities = 9/11 (81%), Positives = 9/11 (81%) Frame = +3 Query: 3 PCNTCACGCPS 35 PC TCACGC S Sbjct: 435 PCKTCACGCSS 445
>COBL9_ARATH (Q9FJ13) COBRA-like protein 9 precursor| Length = 663 Score = 164 bits (414), Expect(2) = 5e-43 Identities = 80/142 (56%), Positives = 101/142 (71%), Gaps = 9/142 (6%) Frame = +2 Query: 137 AWAQLKHYNVPRPMPCGDFCGVSINWHVSSDFNKGWSARVTLFNWGDVDMANWFAAMVMD 316 AW LKH +P PMPCGD CGVSINWH++SD+ GW+ R+T+FNWG++D NWF A+ M Sbjct: 477 AWNALKHKTLPNPMPCGDNCGVSINWHMASDYRGGWTVRITIFNWGEIDFPNWFLAVQMK 536 Query: 317 K-AYDGFEKAYSFNA---TAEG--NNTIFMQGLEGLNYLVKQTNMSG---SDYLVPGKQQ 469 K A GFEKAYSFNA + +G NNTIFM+GL GL+YLV + + + +PGKQQ Sbjct: 537 KPALLGFEKAYSFNASLLSVDGGVNNTIFMEGLPGLDYLVAEADEKDPKKKNIRIPGKQQ 596 Query: 470 SVLSFTKKPTPDIDVVAGDGFP 535 SV+ F+KK TP I+V DGFP Sbjct: 597 SVIQFSKKLTPGINVAERDGFP 618 Score = 30.0 bits (66), Expect(2) = 5e-43 Identities = 10/11 (90%), Positives = 10/11 (90%) Frame = +3 Query: 3 PCNTCACGCPS 35 PCNTCACGC S Sbjct: 434 PCNTCACGCVS 444
>COBL8_ARATH (Q9LIB6) COBRA-like protein 8 precursor| Length = 653 Score = 166 bits (421), Expect(3) = 4e-42 Identities = 80/140 (57%), Positives = 98/140 (70%), Gaps = 6/140 (4%) Frame = +2 Query: 137 AWAQLKHYNVPRPMPCGDFCGVSINWHVSSDFNKGWSARVTLFNWGDVDMANWFAAMVMD 316 AWA LK+ VP P+PCGD CGVSINWH+++D+ GW+ARVTLFNWGD D +WF A+ + Sbjct: 471 AWAVLKNRKVPDPLPCGDNCGVSINWHLATDYRGGWTARVTLFNWGDTDFVDWFTAVELR 530 Query: 317 KAYDGFEKAYSFN----ATAEGNNTIFMQGLEGLNYLV--KQTNMSGSDYLVPGKQQSVL 478 A GF+KAYSFN A N T+ M+GL GLNYL+ K D+ +PGKQQSV+ Sbjct: 531 NAAPGFQKAYSFNGSIIAVNGKNTTVLMEGLPGLNYLLAEKDGKNPSEDFRIPGKQQSVI 590 Query: 479 SFTKKPTPDIDVVAGDGFPT 538 SFTKK TP I V + DGFPT Sbjct: 591 SFTKKLTPGIKVGSKDGFPT 610 Score = 23.5 bits (49), Expect(3) = 4e-42 Identities = 7/8 (87%), Positives = 7/8 (87%) Frame = +3 Query: 3 PCNTCACG 26 PC TCACG Sbjct: 426 PCKTCACG 433 Score = 21.6 bits (44), Expect(3) = 4e-42 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = +1 Query: 37 NRRGPTCSTTAXXXXXXXXXXXXXFDNRTQ 126 +R TCSTT+ FDNRT+ Sbjct: 438 DRVARTCSTTSPALPLPYQALLIPFDNRTK 467
>CBL10_ARATH (Q9LJU0) COBRA-like protein 10 precursor| Length = 672 Score = 157 bits (398), Expect(2) = 6e-41 Identities = 76/141 (53%), Positives = 95/141 (67%), Gaps = 4/141 (2%) Frame = +2 Query: 128 KAQAWAQLKHYNVPRPMPCGDFCGVSINWHVSSDFNKGWSARVTLFNWGDVDMANWFAAM 307 KA+AWA+ H VP+ +PC D CGVSINWHVS+D+ GW+AR+T+FNW D +WF A+ Sbjct: 487 KAKAWAKQNHMPVPKKLPCPDNCGVSINWHVSTDYKNGWTARLTVFNWRDFAFEDWFVAI 546 Query: 308 VMDKAYDGFEKAYSFNAT--AEGNNTIFMQGLEGLNYLVKQTNMSG--SDYLVPGKQQSV 475 M KA G+E YSFN T N T+ QGL G+NYLV Q N + D VPGKQQSV Sbjct: 547 DMGKAGPGYENVYSFNGTRVPPSNRTVIFQGLPGMNYLVGQVNGTNPLRDPPVPGKQQSV 606 Query: 476 LSFTKKPTPDIDVVAGDGFPT 538 +SFTKK +++ GDGFPT Sbjct: 607 ISFTKKNIKGLNIPEGDGFPT 627 Score = 29.3 bits (64), Expect(2) = 6e-41 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = +3 Query: 3 PCNTCACGC 29 PCNTCACGC Sbjct: 447 PCNTCACGC 455
>CBL11_ARATH (Q9T045) COBRA-like protein 11 precursor| Length = 668 Score = 150 bits (380), Expect(2) = 7e-39 Identities = 70/140 (50%), Positives = 95/140 (67%), Gaps = 4/140 (2%) Frame = +2 Query: 128 KAQAWAQLKHYNVPRPMPCGDFCGVSINWHVSSDFNKGWSARVTLFNWGDVDMANWFAAM 307 KA+ WA+ KH P+ +PC D CG+S+NWH++SD+ GWSARVTLFNWG+ + +WF A+ Sbjct: 477 KAKVWAKQKHMAYPKKLPCPDNCGISLNWHLNSDYGNGWSARVTLFNWGNNAVEDWFGAL 536 Query: 308 VMDKAYDGFEKAYSFNAT--AEGNNTIFMQGLEGLNYLVKQTNMS--GSDYLVPGKQQSV 475 + KA G+E YSFN + N TIF QGL G+NYL+ TN + D +PGK QSV Sbjct: 537 DLGKAGLGYENIYSFNGSRVPPKNQTIFFQGLPGMNYLIGITNGTNPARDPQIPGKMQSV 596 Query: 476 LSFTKKPTPDIDVVAGDGFP 535 +SF KK ++++ GDGFP Sbjct: 597 ISFKKKNLGSLNIIGGDGFP 616 Score = 29.3 bits (64), Expect(2) = 7e-39 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = +3 Query: 3 PCNTCACGC 29 PCNTCACGC Sbjct: 437 PCNTCACGC 445
>COBL1_ARATH (Q9SRT7) COBRA-like protein 1 precursor| Length = 452 Score = 42.0 bits (97), Expect(2) = 1e-04 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 9/122 (7%) Frame = +2 Query: 152 KHYNVPRPMPCGD-FCGVSINWHVSSDFNKGWSARVTLFNWG-DVDMANWFAAMVMDKAY 325 K+ +P + C C V I+WHV ++ + W +VT+ N+ +++ + W +V + Sbjct: 278 KNAYIPPLVQCTKHMCPVRIHWHVKVNYKQYWRVKVTITNFNYNMNYSQW-NLVVQHPNF 336 Query: 326 DGFEKAYSFN-----ATAEGNNTIFMQGLEGLNYLVKQTNMSGS--DYLVPGKQQSVLSF 484 D + +SFN A N+T + G++ N L+ Q G+ L+ K+ S +F Sbjct: 337 DNLTQTFSFNYKPLTPYASINDTGILWGIKFYNDLLMQAGPFGNVQSELLFQKEASAFTF 396 Query: 485 TK 490 K Sbjct: 397 EK 398 Score = 22.3 bits (46), Expect(2) = 1e-04 Identities = 6/8 (75%), Positives = 7/8 (87%) Frame = +3 Query: 6 CNTCACGC 29 C TC+CGC Sbjct: 245 CPTCSCGC 252
>COBL6_ARATH (O04500) COBRA-like protein 6 precursor| Length = 454 Score = 33.9 bits (76), Expect(2) = 0.002 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = +2 Query: 182 CGD-FCGVSINWHVSSDFNKGWSARVTLFNWGDV-DMANWFAAMVMDKAYDGFEKAYSFN 355 C D C + I+WHV ++ + W ++T N+ + + NW +V+ ++ +SFN Sbjct: 285 CSDHMCPIRIHWHVKVNYREYWRVKITATNFNTMKNYTNW-NLVVLHPNLKSVQQVFSFN 343 Score = 26.6 bits (57), Expect(2) = 0.002 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 8/29 (27%) Frame = +3 Query: 3 PCNTCACGCPSX--------PPGSYLQHD 65 PC TC+CGC S PP +HD Sbjct: 246 PCPTCSCGCSSSHCVKDGELPPYLEQKHD 274
>COBL2_ARATH (Q8L8Q7) COBRA-like protein 2 precursor| Length = 441 Score = 39.7 bits (91), Expect = 0.005 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 6/107 (5%) Frame = +2 Query: 194 CGVSINWHVSSDFNKGWSARVTLFNWG-DVDMANWFAAMVMDKAYDGFEKAYSFNATAEG 370 C + ++WHV + + + W +V + N+ +++ + W +V +D K +SFN Sbjct: 284 CPIRVHWHVKTSYKEYWRVKVAITNFNYNMNYSQW-NLVVQHPNFDNLTKLFSFNYKPLN 342 Query: 371 -----NNTIFMQGLEGLNYLVKQTNMSGSDYLVPGKQQSVLSFTKKP 496 N+T + G++ N + Q G+ QS L F K P Sbjct: 343 PYLNINDTAMLWGIKFYNDFLSQAGPVGN-------VQSELLFQKNP 382
>COBL4_ARATH (Q9LFW3) COBRA-like protein 4 precursor| Length = 431 Score = 28.9 bits (63), Expect(2) = 0.17 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 5/102 (4%) Frame = +2 Query: 152 KHYNVPRPMPCGDFCGVSINWHVSSDFNKGWSARVTLFNWGDVDMANWFAAMVMDKAYDG 331 K N P C V ++WHV +++ W ++ + N+ + + + Sbjct: 262 KKDNTPLLQCTHHMCPVRVHWHVKTNYKDYWRVKIAITNFNYRMNHTLWTLAIQHPNLNN 321 Query: 332 FEKAYSFNATAEG-----NNTIFMQGLEGLNYLVKQTNMSGS 442 + +SF+ N+T G + N L+ + SG+ Sbjct: 322 VTQVFSFDYKPVSPYGSINDTGMFYGTKFYNDLLMEAGPSGN 363 Score = 24.6 bits (52), Expect(2) = 0.17 Identities = 7/9 (77%), Positives = 8/9 (88%) Frame = +3 Query: 3 PCNTCACGC 29 PC +CACGC Sbjct: 231 PCPSCACGC 239
>COBRA_ARATH (Q94KT8) COBRA protein precursor (Cell expansion protein)| Length = 456 Score = 34.7 bits (78), Expect = 0.18 Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 8/107 (7%) Frame = +2 Query: 194 CGVSINWHVSSDFNKGWSARVTLFNWG-DVDMANWFAAMVMDKAYDGFEKAYSFN----- 355 C + ++WHV ++ + W ++T+ N+ ++ W + D + +SFN Sbjct: 298 CPIRVHWHVKQNYKEYWRVKITITNFNYRLNYTQW-NLVAQHPNLDNITQIFSFNYKSLT 356 Query: 356 ATAEGNNTIFMQGLEGLNYLVKQTNMSGS--DYLVPGKQQSVLSFTK 490 A N+T + G++ N + + G+ ++ K QS +F K Sbjct: 357 PYAGLNDTAMLWGVKFYNDFLSEAGPLGNVQSEILFRKDQSTFTFEK 403
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 30.8 bits (68), Expect = 2.5 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = +2 Query: 149 LKHYNVPRPMPCGDFCGVSINWHVSSDFNKGWSARVTLFNWGDVDMANWFAAM 307 L H P P GVS +W+ + D K + NW DVD++ + M Sbjct: 436 LAHQPPPPPQQVSCNSGVSSDWYATLDMLKESCRIASSVNWSDVDLSQFQGLM 488
>PDE7A_MOUSE (P70453) High-affinity cAMP-specific 3',5'-cyclic phosphodiesterase| 7A (EC 3.1.4.17) (P2A) Length = 456 Score = 30.4 bits (67), Expect = 3.3 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Frame = +2 Query: 152 KHYNVPRPMPCGDFCGVSINWHVSSDFNKGWSARVT--LFNWGDVD 283 +H + + C D C NW +S K WS +VT F+ GD++ Sbjct: 324 RHLVLQMALKCADICNPCRNWELS----KQWSEKVTEEFFHQGDIE 365
>PDE7A_RAT (O08593) High-affinity cAMP-specific 3',5'-cyclic phosphodiesterase| 7A (EC 3.1.4.17) (Rolipram-insensitive phosphodiesterase type 7) (Fragment) Length = 426 Score = 30.4 bits (67), Expect = 3.3 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Frame = +2 Query: 152 KHYNVPRPMPCGDFCGVSINWHVSSDFNKGWSARVT--LFNWGDVD 283 +H + + C D C NW +S K WS +VT F+ GD++ Sbjct: 294 RHLVLQMALKCADICNPCRNWELS----KQWSEKVTEEFFHQGDIE 335
>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3| Length = 622 Score = 30.4 bits (67), Expect = 3.3 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = +2 Query: 149 LKHYNVPRPMPCGDFCGVSINWHVSSDFNKGWSARVTLFNWGDVDMANWFAAM 307 L H P P GVS +W+ + D K + NW DVD++ + M Sbjct: 435 LTHQAPPPPQQVSCNSGVSNDWYATLDMLKESCRIASSVNWSDVDLSQFQGLM 487
>MTN4_NEILA (P50182) Modification methylase NlaIV (EC 2.1.1.37)| (Cytosine-specific methyltransferase NlaIV) (M.NlaIV) Length = 423 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 11/65 (16%) Frame = +2 Query: 377 TIFMQGLEGLNYLVKQTNMSGSDYLVPGKQQSV-----------LSFTKKPTPDIDVVAG 523 T+ ++ LE L Y V ++ D+ +P ++ + LSF P+P + + Sbjct: 140 TVILETLEALGYYVSWKVLNAKDFGIPQNRKRIYLTGSLKSKPDLSFETTPSPKLKNILE 199 Query: 524 DGFPT 538 G PT Sbjct: 200 SGLPT 204
>ITA6_CHICK (P26007) Integrin alpha-6 precursor (VLA-6) [Contains: Integrin| alpha-6 heavy chain; Integrin alpha-6 light chain] Length = 1072 Score = 30.0 bits (66), Expect = 4.3 Identities = 23/83 (27%), Positives = 38/83 (45%) Frame = +2 Query: 266 NWGDVDMANWFAAMVMDKAYDGFEKAYSFNATAEGNNTIFMQGLEGLNYLVKQTNMSGSD 445 N GD++ + + + + YDGF K Y ++ + G NT Q L+G ++T + Sbjct: 377 NVGDINQ-DGYPDIAVGAPYDGFGKVYIYHGSKNGINTEPAQILDG-----EKTGTNFFG 430 Query: 446 YLVPGKQQSVLSFTKKPTPDIDV 514 Y + G + K PDI V Sbjct: 431 YSIAGN----MDLDKNSYPDIAV 449
>Y2105_SULSO (P95879) Hypothetical protein SSO2105| Length = 369 Score = 29.6 bits (65), Expect = 5.6 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = +2 Query: 119 VHXKAQAWAQLKHYNVPRPMPCGDFCGVSIN 211 +H + W LKH+++P+P G G +N Sbjct: 189 IHLQIPLWLYLKHFSLPKPTGYGLIAGFDLN 219
>MUC5A_HUMAN (P98088) Mucin-5AC (Mucin 5 subtype AC, tracheobronchial)| (Tracheobronchial mucin) (TBM) (Major airway glycoprotein) (Fragment) Length = 1233 Score = 29.6 bits (65), Expect = 5.6 Identities = 20/73 (27%), Positives = 24/73 (32%) Frame = +3 Query: 6 CNTCACGCPSXPPGSYLQHDCPIHALATGSAACPVRQPYTXRRRHGLN*STTMCLGQCLA 185 C TC C P PP C T CPV Y + + C G C+ Sbjct: 980 CETCRCELPGGPPSDAFVVSCETQICNT---HCPVGFEYQEQ--------SGQCCGTCVQ 1028 Query: 186 VISVV*ASIGMSH 224 V V S +H Sbjct: 1029 VACVTNTSKSPAH 1041
>GASA3_ARATH (P46687) Gibberellin-regulated protein 3 precursor| Length = 99 Score = 29.3 bits (64), Expect = 7.4 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%) Frame = +3 Query: 6 CNTCACGCPSXPPGSYLQHD-CPIHALAT---GSAACP 107 CN+C C PPG+ H CP +A T G CP Sbjct: 62 CNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99
>GASA2_ARATH (P46688) Gibberellin-regulated protein 2 precursor| Length = 99 Score = 29.3 bits (64), Expect = 7.4 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 4/38 (10%) Frame = +3 Query: 6 CNTCACGCPSXPPG-SYLQHDCPIHALAT---GSAACP 107 CN+C C PPG S H CP +A T G CP Sbjct: 62 CNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99
>GASA1_ARATH (P46689) Gibberellin-regulated protein 1 precursor| Length = 98 Score = 29.3 bits (64), Expect = 7.4 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%) Frame = +3 Query: 6 CNTCACGCPSXPPGSYLQHD-CPIHALAT---GSAACP 107 C TC C PPG+Y +D C +A T G CP Sbjct: 61 CGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98
>MURB_BUCAP (Q8KA63) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 344 Score = 29.3 bits (64), Expect = 7.4 Identities = 13/54 (24%), Positives = 27/54 (50%) Frame = +2 Query: 317 KAYDGFEKAYSFNATAEGNNTIFMQGLEGLNYLVKQTNMSGSDYLVPGKQQSVL 478 K+Y + +F+ IF++ ++ L + K N+S Y++ G+ +VL Sbjct: 6 KSYQSLKNLNTFSINVTAKKIIFVKTIQSLMKIWKTCNLSNIPYIILGEGSNVL 59
>MTB5_NEIGO (Q59605) Modification methylase NgoBV (EC 2.1.1.37)| (Cytosine-specific methyltransferase NgoBV) (M.NgoBV) (M.NgoV) Length = 423 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 11/65 (16%) Frame = +2 Query: 377 TIFMQGLEGLNYLVKQTNMSGSDYLVPGKQQSV-----------LSFTKKPTPDIDVVAG 523 T+ ++ LE L Y V ++ ++ +P ++ + LSF P+P + + Sbjct: 140 TVILETLEALGYYVSWKVLNAKEFGIPQNRKRIYLTGSLKSKPDLSFETSPSPKLKNILE 199 Query: 524 DGFPT 538 G PT Sbjct: 200 SGLPT 204 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,031,912 Number of Sequences: 219361 Number of extensions: 1837722 Number of successful extensions: 5076 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4861 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5063 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
