ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8o24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ495776.1|HVU495776 Hordeum vulgare partial mRNA for putati... 797 0.0
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 430 e-117
3gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare str... 430 e-117
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 430 e-117
5dbj|AK119578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 430 e-117
6dbj|AK065552.1| Oryza sativa (japonica cultivar-group) cDNA clon... 430 e-117
7gb|AY265855.1| Zea mays roothairless 3 (rth3) gene, complete cds 391 e-105
8gb|AY112035.1| Zea mays CL28146_1 mRNA sequence 180 3e-42
9ref|XM_610571.2| PREDICTED: Bos taurus similar to paraneoplastic... 48 0.030
10gb|AC139562.8| Mus musculus chromosome 5, clone RP24-180G11, com... 42 1.8
11ref|XM_753888.1| Ustilago maydis 521 hypothetical protein (UM028... 42 1.8
12gb|AC159539.6| Mus musculus chromosome 5, clone RP23-228F6, comp... 42 1.8
13emb|Z28383.1|TISACYS T.niveum (ATCC34921) simA gene for cyclospo... 42 1.8
14gb|AC138265.9| Mus musculus chromosome 5, clone RP23-41J13, comp... 40 7.3
15gb|AC140302.2| Mus musculus BAC clone RP24-321I14 from chromosom... 40 7.3
16ref|XM_445461.1| Candida glabrata CBS138, CAGL0D01078g partial mRNA 40 7.3
17gb|AC164403.5| Mus musculus chromosome 7, clone RP23-477O13, com... 40 7.3
18gb|AC112129.4| Homo sapiens 3 BAC RP11-25L9 (Roswell Park Cancer... 40 7.3
19emb|CR380950.1| Candida glabrata strain CBS138 chromosome D comp... 40 7.3
20gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare str... 40 7.3
21gb|AC013251.19| Homo sapiens 3 BAC RP11-38P22 (Roswell Park Canc... 40 7.3
22gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.3
23dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
24dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
26dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
27dbj|AP005835.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
28gb|U27612.2|SVU27612 Stealth virus 1 clone 3B23 40 7.3
29gb|AC102758.10| Mus musculus chromosome 7, clone RP24-200F21, co... 40 7.3
30gb|AC158587.3| Mus musculus chromosome 7, clone RP24-156F13, com... 40 7.3
31gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
32gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
33emb|AL713933.6|CNS07YPE Oryza sativa chromosome 12, . BAC OJ1041... 40 7.3
34emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119... 40 7.3
35emb|AJ006945.1|HSA569 Human P2Y1 gene 40 7.3
36emb|AL732588.6| Mouse DNA sequence from clone RP24-159M19 on chr... 40 7.3

>emb|AJ495776.1|HVU495776 Hordeum vulgare partial mRNA for putative phytochelatin synthetase
          Length = 1246

 Score =  797 bits (402), Expect = 0.0
 Identities = 434/441 (98%), Gaps = 3/441 (0%)
 Strand = Plus / Plus

                                                                        
Query: 3    ccctgcaacacgtgtgcatgcggttgcccctcgnaaccgccggggtcctacctgcagcac 62
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 808  ccctgcaacacgtgtgcatgcggttgcccctcg-aaccgccggggtcctacctgcagcac 866

                                                                        
Query: 63   gactgccccatccatgctcttgccaccggnagcgctgcttgtcccgttcgacaaccgtac 122
            |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 867  gactgccccatccatgctcttgccaccggaggcgctgcttgtcccgttcgacaaccgtac 926

                                                                        
Query: 123  acagnaaggcgcaggcatgggctcaattgaagcactacaatgtgcctaggccaatgcctt 182
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  acag-aaggcgcaggcatgggctcaattgaagcactacaatgtgcctaggccaatgcctt 985

                                                                        
Query: 183  gcggtgatttctgtggtgtgagcatcaattggcatgtctcatcagacttcaacaagggct 242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986  gcggtgatttctgtggtgtgagcatcaattggcatgtctcatcagacttcaacaagggct 1045

                                                                        
Query: 243  ggagtgctcgggtgacattgttcaattggggcgatgtcgacatggccaactggttcgctg 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 ggagtgctcgggtgacattgttcaattggggcgatgtcgacatggccaactggttcgctg 1105

                                                                        
Query: 303  ccatggtcatggacaaggcgtatgat-ggatttgagaaggcatactctttcaatgcaaca 361
            |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1106 ccatggtcatggacaaagcgtatgatgggatttgagaaggcatactctttcaatgcaaca 1165

                                                                        
Query: 362  gcagagggcaataacacaatctttatgcagggccttgaggggctcaattaccttgtgaag 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 gcagagggcaataacacaatctttatgcagggccttgaggggctcaattaccttgtgaag 1225

                                 
Query: 422  cagaccaacatgagtgggtcg 442
            || ||||||||||||||||||
Sbjct: 1226 caaaccaacatgagtgggtcg 1246



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  430 bits (217), Expect = e-117
 Identities = 424/492 (86%), Gaps = 1/492 (0%)
 Strand = Plus / Plus

                                                                            
Query: 43       cggggtcctacctgcagcacgactgccccatccatgctcttgccaccggnagcgctgctt 102
                ||||||||||| |||||||||||||| | |||||||||| ||||||| |  |||||||||
Sbjct: 10572540 cggggtcctacttgcagcacgactgctcaatccatgctcctgccacccgaggcgctgctt 10572599

                                                                            
Query: 103      gtcccgttcgacaaccgtacacagnaaggcgcaggcatgggctcaattgaagcactacaa 162
                || || |||||||| || |||||| |||||   |||||||||  | ||||||||||||||
Sbjct: 10572600 gtgccattcgacaatcgcacacag-aaggcattggcatgggccgagttgaagcactacaa 10572658

                                                                            
Query: 163      tgtgcctaggccaatgccttgcggtgatttctgtggtgtgagcatcaattggcatgtctc 222
                |||||||| |||||||||||| ||||||| |||||| |||||||||||||||||  | ||
Sbjct: 10572659 tgtgcctaagccaatgccttgtggtgattactgtggcgtgagcatcaattggcacatatc 10572718

                                                                            
Query: 223      atcagacttcaacaagggctggagtgctcgggtgacattgttcaattggggcgatgtcga 282
                  |||||| ||||||||||||||| |||||| |||||||||||||||||| | |||||||
Sbjct: 10572719 tacagactacaacaagggctggagcgctcggatgacattgttcaattgggacaatgtcga 10572778

                                                                            
Query: 283      catggccaactggttcgctgccatggtcatggacaaggcgtatgatggatttgagaaggc 342
                | |||| |||||||| ||||| || |||||||||||||| |||||||| |||||||||||
Sbjct: 10572779 cttggcaaactggtttgctgctattgtcatggacaaggcttatgatggttttgagaaggc 10572838

                                                                            
Query: 343      atactctttcaatgcaacagcagagggcaataacacaatctttatgcagggccttgaggg 402
                 ||||||||||||   ||| |||  ||||| ||||| ||||| ||||| || ||||||||
Sbjct: 10572839 gtactctttcaatagcacatcagttggcaagaacaccatcttcatgcaaggtcttgaggg 10572898

                                                                            
Query: 403      gctcaattaccttgtgaagcagaccaacatgagtgggtcggattacctcgtgccgggaaa 462
                |||||||||||| ||||||||||||||||||||||| || || ||||| ||||| || ||
Sbjct: 10572899 gctcaattacctggtgaagcagaccaacatgagtggatcagactaccttgtgcctgggaa 10572958

                                                                            
Query: 463      gcagcaatcagtgctctcattcaccaagaagcctactcctgatattgatgttgtcgccgg 522
                |||||| |||||||||||||||||||||||||  |||||||  ||  ||||||| || ||
Sbjct: 10572959 gcagcagtcagtgctctcattcaccaagaagctgactcctggcatcaatgttgttgctgg 10573018

                            
Query: 523      agatgggttccc 534
                |||||| |||||
Sbjct: 10573019 agatggtttccc 10573030



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 358      aacagcagagggcaataaca 377
                ||||||||||||||||||||
Sbjct: 10243923 aacagcagagggcaataaca 10243904



to top

>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0036G02, from chromosome 3, complete sequence
          Length = 153308

 Score =  430 bits (217), Expect = e-117
 Identities = 424/492 (86%), Gaps = 1/492 (0%)
 Strand = Plus / Plus

                                                                          
Query: 43     cggggtcctacctgcagcacgactgccccatccatgctcttgccaccggnagcgctgctt 102
              ||||||||||| |||||||||||||| | |||||||||| ||||||| |  |||||||||
Sbjct: 128353 cggggtcctacttgcagcacgactgctcaatccatgctcctgccacccgaggcgctgctt 128412

                                                                          
Query: 103    gtcccgttcgacaaccgtacacagnaaggcgcaggcatgggctcaattgaagcactacaa 162
              || || |||||||| || |||||| |||||   |||||||||  | ||||||||||||||
Sbjct: 128413 gtgccattcgacaatcgcacacag-aaggcattggcatgggccgagttgaagcactacaa 128471

                                                                          
Query: 163    tgtgcctaggccaatgccttgcggtgatttctgtggtgtgagcatcaattggcatgtctc 222
              |||||||| |||||||||||| ||||||| |||||| |||||||||||||||||  | ||
Sbjct: 128472 tgtgcctaagccaatgccttgtggtgattactgtggcgtgagcatcaattggcacatatc 128531

                                                                          
Query: 223    atcagacttcaacaagggctggagtgctcgggtgacattgttcaattggggcgatgtcga 282
                |||||| ||||||||||||||| |||||| |||||||||||||||||| | |||||||
Sbjct: 128532 tacagactacaacaagggctggagcgctcggatgacattgttcaattgggacaatgtcga 128591

                                                                          
Query: 283    catggccaactggttcgctgccatggtcatggacaaggcgtatgatggatttgagaaggc 342
              | |||| |||||||| ||||| || |||||||||||||| |||||||| |||||||||||
Sbjct: 128592 cttggcaaactggtttgctgctattgtcatggacaaggcttatgatggttttgagaaggc 128651

                                                                          
Query: 343    atactctttcaatgcaacagcagagggcaataacacaatctttatgcagggccttgaggg 402
               ||||||||||||   ||| |||  ||||| ||||| ||||| ||||| || ||||||||
Sbjct: 128652 gtactctttcaatagcacatcagttggcaagaacaccatcttcatgcaaggtcttgaggg 128711

                                                                          
Query: 403    gctcaattaccttgtgaagcagaccaacatgagtgggtcggattacctcgtgccgggaaa 462
              |||||||||||| ||||||||||||||||||||||| || || ||||| ||||| || ||
Sbjct: 128712 gctcaattacctggtgaagcagaccaacatgagtggatcagactaccttgtgcctgggaa 128771

                                                                          
Query: 463    gcagcaatcagtgctctcattcaccaagaagcctactcctgatattgatgttgtcgccgg 522
              |||||| |||||||||||||||||||||||||  |||||||  ||  ||||||| || ||
Sbjct: 128772 gcagcagtcagtgctctcattcaccaagaagctgactcctggcatcaatgttgttgctgg 128831

                          
Query: 523    agatgggttccc 534
              |||||| |||||
Sbjct: 128832 agatggtttccc 128843



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  430 bits (217), Expect = e-117
 Identities = 424/492 (86%), Gaps = 1/492 (0%)
 Strand = Plus / Plus

                                                                            
Query: 43       cggggtcctacctgcagcacgactgccccatccatgctcttgccaccggnagcgctgctt 102
                ||||||||||| |||||||||||||| | |||||||||| ||||||| |  |||||||||
Sbjct: 10570641 cggggtcctacttgcagcacgactgctcaatccatgctcctgccacccgaggcgctgctt 10570700

                                                                            
Query: 103      gtcccgttcgacaaccgtacacagnaaggcgcaggcatgggctcaattgaagcactacaa 162
                || || |||||||| || |||||| |||||   |||||||||  | ||||||||||||||
Sbjct: 10570701 gtgccattcgacaatcgcacacag-aaggcattggcatgggccgagttgaagcactacaa 10570759

                                                                            
Query: 163      tgtgcctaggccaatgccttgcggtgatttctgtggtgtgagcatcaattggcatgtctc 222
                |||||||| |||||||||||| ||||||| |||||| |||||||||||||||||  | ||
Sbjct: 10570760 tgtgcctaagccaatgccttgtggtgattactgtggcgtgagcatcaattggcacatatc 10570819

                                                                            
Query: 223      atcagacttcaacaagggctggagtgctcgggtgacattgttcaattggggcgatgtcga 282
                  |||||| ||||||||||||||| |||||| |||||||||||||||||| | |||||||
Sbjct: 10570820 tacagactacaacaagggctggagcgctcggatgacattgttcaattgggacaatgtcga 10570879

                                                                            
Query: 283      catggccaactggttcgctgccatggtcatggacaaggcgtatgatggatttgagaaggc 342
                | |||| |||||||| ||||| || |||||||||||||| |||||||| |||||||||||
Sbjct: 10570880 cttggcaaactggtttgctgctattgtcatggacaaggcttatgatggttttgagaaggc 10570939

                                                                            
Query: 343      atactctttcaatgcaacagcagagggcaataacacaatctttatgcagggccttgaggg 402
                 ||||||||||||   ||| |||  ||||| ||||| ||||| ||||| || ||||||||
Sbjct: 10570940 gtactctttcaatagcacatcagttggcaagaacaccatcttcatgcaaggtcttgaggg 10570999

                                                                            
Query: 403      gctcaattaccttgtgaagcagaccaacatgagtgggtcggattacctcgtgccgggaaa 462
                |||||||||||| ||||||||||||||||||||||| || || ||||| ||||| || ||
Sbjct: 10571000 gctcaattacctggtgaagcagaccaacatgagtggatcagactaccttgtgcctgggaa 10571059

                                                                            
Query: 463      gcagcaatcagtgctctcattcaccaagaagcctactcctgatattgatgttgtcgccgg 522
                |||||| |||||||||||||||||||||||||  |||||||  ||  ||||||| || ||
Sbjct: 10571060 gcagcagtcagtgctctcattcaccaagaagctgactcctggcatcaatgttgttgctgg 10571119

                            
Query: 523      agatgggttccc 534
                |||||| |||||
Sbjct: 10571120 agatggtttccc 10571131



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 358      aacagcagagggcaataaca 377
                ||||||||||||||||||||
Sbjct: 10242024 aacagcagagggcaataaca 10242005



to top

>dbj|AK119578.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-B09, full
            insert sequence
          Length = 2353

 Score =  430 bits (217), Expect = e-117
 Identities = 424/492 (86%), Gaps = 1/492 (0%)
 Strand = Plus / Plus

                                                                        
Query: 43   cggggtcctacctgcagcacgactgccccatccatgctcttgccaccggnagcgctgctt 102
            ||||||||||| |||||||||||||| | |||||||||| ||||||| |  |||||||||
Sbjct: 1414 cggggtcctacttgcagcacgactgctcaatccatgctcctgccacccgaggcgctgctt 1473

                                                                        
Query: 103  gtcccgttcgacaaccgtacacagnaaggcgcaggcatgggctcaattgaagcactacaa 162
            || || |||||||| || |||||| |||||   |||||||||  | ||||||||||||||
Sbjct: 1474 gtgccattcgacaatcgcacacag-aaggcattggcatgggccgagttgaagcactacaa 1532

                                                                        
Query: 163  tgtgcctaggccaatgccttgcggtgatttctgtggtgtgagcatcaattggcatgtctc 222
            |||||||| |||||||||||| ||||||| |||||| |||||||||||||||||  | ||
Sbjct: 1533 tgtgcctaagccaatgccttgtggtgattactgtggcgtgagcatcaattggcacatatc 1592

                                                                        
Query: 223  atcagacttcaacaagggctggagtgctcgggtgacattgttcaattggggcgatgtcga 282
              |||||| ||||||||||||||| |||||| |||||||||||||||||| | |||||||
Sbjct: 1593 tacagactacaacaagggctggagcgctcggatgacattgttcaattgggacaatgtcga 1652

                                                                        
Query: 283  catggccaactggttcgctgccatggtcatggacaaggcgtatgatggatttgagaaggc 342
            | |||| |||||||| ||||| || |||||||||||||| |||||||| |||||||||||
Sbjct: 1653 cttggcaaactggtttgctgctattgtcatggacaaggcttatgatggttttgagaaggc 1712

                                                                        
Query: 343  atactctttcaatgcaacagcagagggcaataacacaatctttatgcagggccttgaggg 402
             ||||||||||||   ||| |||  ||||| ||||| ||||| ||||| || ||||||||
Sbjct: 1713 gtactctttcaatagcacatcagttggcaagaacaccatcttcatgcaaggtcttgaggg 1772

                                                                        
Query: 403  gctcaattaccttgtgaagcagaccaacatgagtgggtcggattacctcgtgccgggaaa 462
            |||||||||||| ||||||||||||||||||||||| || || ||||| ||||| || ||
Sbjct: 1773 gctcaattacctggtgaagcagaccaacatgagtggatcagactaccttgtgcctgggaa 1832

                                                                        
Query: 463  gcagcaatcagtgctctcattcaccaagaagcctactcctgatattgatgttgtcgccgg 522
            |||||| |||||||||||||||||||||||||  |||||||  ||  ||||||| || ||
Sbjct: 1833 gcagcagtcagtgctctcattcaccaagaagctgactcctggcatcaatgttgttgctgg 1892

                        
Query: 523  agatgggttccc 534
            |||||| |||||
Sbjct: 1893 agatggtttccc 1904



to top

>dbj|AK065552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027D03, full
            insert sequence
          Length = 2249

 Score =  430 bits (217), Expect = e-117
 Identities = 424/492 (86%), Gaps = 1/492 (0%)
 Strand = Plus / Plus

                                                                        
Query: 43   cggggtcctacctgcagcacgactgccccatccatgctcttgccaccggnagcgctgctt 102
            ||||||||||| |||||||||||||| | |||||||||| ||||||| |  |||||||||
Sbjct: 1277 cggggtcctacttgcagcacgactgctcaatccatgctcctgccacccgaggcgctgctt 1336

                                                                        
Query: 103  gtcccgttcgacaaccgtacacagnaaggcgcaggcatgggctcaattgaagcactacaa 162
            || || |||||||| || |||||| |||||   |||||||||  | ||||||||||||||
Sbjct: 1337 gtgccattcgacaatcgcacacag-aaggcattggcatgggccgagttgaagcactacaa 1395

                                                                        
Query: 163  tgtgcctaggccaatgccttgcggtgatttctgtggtgtgagcatcaattggcatgtctc 222
            |||||||| |||||||||||| ||||||| |||||| |||||||||||||||||  | ||
Sbjct: 1396 tgtgcctaagccaatgccttgtggtgattactgtggcgtgagcatcaattggcacatatc 1455

                                                                        
Query: 223  atcagacttcaacaagggctggagtgctcgggtgacattgttcaattggggcgatgtcga 282
              |||||| ||||||||||||||| |||||| |||||||||||||||||| | |||||||
Sbjct: 1456 tacagactacaacaagggctggagcgctcggatgacattgttcaattgggacaatgtcga 1515

                                                                        
Query: 283  catggccaactggttcgctgccatggtcatggacaaggcgtatgatggatttgagaaggc 342
            | |||| |||||||| ||||| || |||||||||||||| |||||||| |||||||||||
Sbjct: 1516 cttggcaaactggtttgctgctattgtcatggacaaggcttatgatggttttgagaaggc 1575

                                                                        
Query: 343  atactctttcaatgcaacagcagagggcaataacacaatctttatgcagggccttgaggg 402
             ||||||||||||   ||| |||  ||||| ||||| ||||| ||||| || ||||||||
Sbjct: 1576 gtactctttcaatagcacatcagttggcaagaacaccatcttcatgcaaggtcttgaggg 1635

                                                                        
Query: 403  gctcaattaccttgtgaagcagaccaacatgagtgggtcggattacctcgtgccgggaaa 462
            |||||||||||| ||||||||||||||||||||||| || || ||||| ||||| || ||
Sbjct: 1636 gctcaattacctggtgaagcagaccaacatgagtggatcagactaccttgtgcctgggaa 1695

                                                                        
Query: 463  gcagcaatcagtgctctcattcaccaagaagcctactcctgatattgatgttgtcgccgg 522
            |||||| |||||||||||||||||||||||||  |||||||  ||  ||||||| || ||
Sbjct: 1696 gcagcagtcagtgctctcattcaccaagaagctgactcctggcatcaatgttgttgctgg 1755

                        
Query: 523  agatgggttccc 534
            |||||| |||||
Sbjct: 1756 agatggtttccc 1767



to top

>gb|AY265855.1| Zea mays roothairless 3 (rth3) gene, complete cds
          Length = 3152

 Score =  391 bits (197), Expect = e-105
 Identities = 380/440 (86%), Gaps = 1/440 (0%)
 Strand = Plus / Plus

                                                                        
Query: 55   tgcagcacgactgccccatccatgctcttgccaccggnagcgctgcttgtcccgttcgac 114
            |||||||| || || | |||||||||  |||||||||  ||||||||||| || ||||||
Sbjct: 1969 tgcagcaccaccgcacaatccatgctgctgccaccggaggcgctgcttgtgccattcgac 2028

                                                                        
Query: 115  aaccgtacacagnaaggcgcaggcatgggctcaattgaagcactacaatgtgcctaggcc 174
            |||||  ||||| ||||||  ||| |||||| |  ||||||| |||||||||||  ||||
Sbjct: 2029 aaccggtcacag-aaggcgttggcgtgggctgagctgaagcattacaatgtgccccggcc 2087

                                                                        
Query: 175  aatgccttgcggtgatttctgtggtgtgagcatcaattggcatgtctcatcagacttcaa 234
             |||||||||||||| || ||||| |||||||||||||||||||||||| | |||| |||
Sbjct: 2088 gatgccttgcggtgacttttgtggcgtgagcatcaattggcatgtctcaacggactacaa 2147

                                                                        
Query: 235  caagggctggagtgctcgggtgacattgttcaattggggcgatgtcgacatggccaactg 294
            |||||||||||| |||||||||||||||||||| ||||  ||||||||||||||||| ||
Sbjct: 2148 caagggctggagcgctcgggtgacattgttcaactgggaggatgtcgacatggccaattg 2207

                                                                        
Query: 295  gttcgctgccatggtcatggacaaggcgtatgatggatttgagaaggcatactctttcaa 354
            ||| |||||||| |||||||||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 2208 gtttgctgccatcgtcatggacaaggcgtatgacggctttgagaaggcttactcgttcaa 2267

                                                                        
Query: 355  tgcaacagcagagggcaataacacaatctttatgcagggccttgaggggctcaattacct 414
             |  || |||| |||||| ||||| |||||||||||||| || |||||||| ||||||||
Sbjct: 2268 cggcaccgcagtgggcaagaacacgatctttatgcagggtctggaggggcttaattacct 2327

                                                                        
Query: 415  tgtgaagcagaccaacatgagtgggtcggattacctcgtgccgggaaagcagcaatcagt 474
             |||||||||||||||||||||||||| || ||||| || || || ||||| || |||||
Sbjct: 2328 ggtgaagcagaccaacatgagtgggtccgactaccttgttcctggcaagcaacagtcagt 2387

                                
Query: 475  gctctcattcaccaagaagc 494
             |||||||||||||||||||
Sbjct: 2388 cctctcattcaccaagaagc 2407



to top

>gb|AY112035.1| Zea mays CL28146_1 mRNA sequence
          Length = 663

 Score =  180 bits (91), Expect = 3e-42
 Identities = 166/191 (86%)
 Strand = Plus / Minus

                                                                       
Query: 275 gatgtcgacatggccaactggttcgctgccatggtcatggacaaggcgtatgatggattt 334
           ||||||||||||||||| ||||| |||||||| |||||||||||||||||||| || |||
Sbjct: 639 gatgtcgacatggccaattggtttgctgccatcgtcatggacaaggcgtatgacggcttt 580

                                                                       
Query: 335 gagaaggcatactctttcaatgcaacagcagagggcaataacacaatctttatgcagggc 394
           |||||||| ||||| ||||| |  || |||| |||||| ||||| |||||||||||||| 
Sbjct: 579 gagaaggcgtactcgttcaacggcactgcagtgggcaagaacacgatctttatgcagggt 520

                                                                       
Query: 395 cttgaggggctcaattaccttgtgaagcagaccaacatgagtgggtcggattacctcgtg 454
           || |||||||| |||||||| ||||||||||| |||||||| ||||| || ||||| |||
Sbjct: 519 ctggaggggcttaattacctggtgaagcagactaacatgagcgggtccgactaccttgtg 460

                      
Query: 455 ccgggaaagca 465
           || || |||||
Sbjct: 459 cctggcaagca 449



to top

>ref|XM_610571.2| PREDICTED: Bos taurus similar to paraneoplastic antigen MA1
           (LOC532062), partial mRNA
          Length = 1086

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 294 ggttcgctgccatggtcatggaca 317
           ||||||||||||||||||||||||
Sbjct: 28  ggttcgctgccatggtcatggaca 5



to top

>gb|AC139562.8| Mus musculus chromosome 5, clone RP24-180G11, complete sequence
          Length = 168158

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 3     ccctgcaacacgtgtgcatgc 23
             |||||||||||||||||||||
Sbjct: 45654 ccctgcaacacgtgtgcatgc 45674



to top

>ref|XM_753888.1| Ustilago maydis 521 hypothetical protein (UM02834.1) partial mRNA
          Length = 3756

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 272  ggcgatgtcgacatggccaac 292
            |||||||||||||||||||||
Sbjct: 2113 ggcgatgtcgacatggccaac 2133



to top

>gb|AC159539.6| Mus musculus chromosome 5, clone RP23-228F6, complete sequence
          Length = 238599

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 3      ccctgcaacacgtgtgcatgc 23
              |||||||||||||||||||||
Sbjct: 209215 ccctgcaacacgtgtgcatgc 209235



to top

>emb|Z28383.1|TISACYS T.niveum (ATCC34921) simA gene for cyclosporine synthetase
          Length = 46899

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 412  ccttgtgaagcagaccaacat 432
            |||||||||||||||||||||
Sbjct: 6116 ccttgtgaagcagaccaacat 6136



to top

>gb|AC138265.9| Mus musculus chromosome 5, clone RP23-41J13, complete sequence
          Length = 172279

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   ctctttcaatgcaacagcag 365
             ||||||||||||||||||||
Sbjct: 27808 ctctttcaatgcaacagcag 27827



to top

>gb|AC140302.2| Mus musculus BAC clone RP24-321I14 from chromosome 5, complete sequence
          Length = 174372

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    ctctttcaatgcaacagcag 365
              ||||||||||||||||||||
Sbjct: 159787 ctctttcaatgcaacagcag 159768



to top

>ref|XM_445461.1| Candida glabrata CBS138, CAGL0D01078g partial mRNA
          Length = 2721

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  catggccaactggttcgctg 302
            ||||||||||||||||||||
Sbjct: 2596 catggccaactggttcgctg 2577



to top

>gb|AC164403.5| Mus musculus chromosome 7, clone RP23-477O13, complete sequence
          Length = 191303

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    gatggatttgagaaggcata 345
              ||||||||||||||||||||
Sbjct: 145098 gatggatttgagaaggcata 145079



to top

>gb|AC112129.4| Homo sapiens 3 BAC RP11-25L9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163621

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 468   aatcagtgctctcattcacc 487
             ||||||||||||||||||||
Sbjct: 49751 aatcagtgctctcattcacc 49770



to top

>emb|CR380950.1| Candida glabrata strain CBS138 chromosome D complete sequence
          Length = 651701

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    catggccaactggttcgctg 302
              ||||||||||||||||||||
Sbjct: 125959 catggccaactggttcgctg 125978



to top

>gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0068A07, from Chromosome 10, complete sequence
          Length = 154505

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 518   gccggagatgggttcccaac 537
             ||||||||||||||||||||
Sbjct: 30478 gccggagatgggttcccaac 30459



to top

>gb|AC013251.19| Homo sapiens 3 BAC RP11-38P22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 176251

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   tcagtgctctcattcaccaa 489
             ||||||||||||||||||||
Sbjct: 70906 tcagtgctctcattcaccaa 70887



to top

>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0045E22, from chromosome 3, complete sequence
          Length = 160920

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    aacagcagagggcaataaca 377
              ||||||||||||||||||||
Sbjct: 105336 aacagcagagggcaataaca 105317



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 354     atgcaacagcagagggcaataaca 377
               ||||||||||||| ||||||||||
Sbjct: 3675841 atgcaacagcagatggcaataaca 3675864



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 518      gccggagatgggttcccaac 537
                ||||||||||||||||||||
Sbjct: 12509053 gccggagatgggttcccaac 12509034



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 164      gtgcctaggccaatgccttg 183
                ||||||||||||||||||||
Sbjct: 21713327 gtgcctaggccaatgccttg 21713308



to top

>dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0025F02
          Length = 156545

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   gtgcctaggccaatgccttg 183
             ||||||||||||||||||||
Sbjct: 94724 gtgcctaggccaatgccttg 94705



to top

>dbj|AP005835.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0008E01
          Length = 156856

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 164  gtgcctaggccaatgccttg 183
            ||||||||||||||||||||
Sbjct: 5726 gtgcctaggccaatgccttg 5707



to top

>gb|U27612.2|SVU27612 Stealth virus 1 clone 3B23
          Length = 8916

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 133  gcaggcatgggctcaattga 152
            ||||||||||||||||||||
Sbjct: 1563 gcaggcatgggctcaattga 1582



to top

>gb|AC102758.10| Mus musculus chromosome 7, clone RP24-200F21, complete sequence
          Length = 181057

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   gatggatttgagaaggcata 345
             ||||||||||||||||||||
Sbjct: 80557 gatggatttgagaaggcata 80538



to top

>gb|AC158587.3| Mus musculus chromosome 7, clone RP24-156F13, complete sequence
          Length = 152262

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    gatggatttgagaaggcata 345
              ||||||||||||||||||||
Sbjct: 111943 gatggatttgagaaggcata 111962



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 518      gccggagatgggttcccaac 537
                ||||||||||||||||||||
Sbjct: 12516393 gccggagatgggttcccaac 12516374



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 354     atgcaacagcagagggcaataaca 377
               ||||||||||||| ||||||||||
Sbjct: 3675815 atgcaacagcagatggcaataaca 3675838



to top

>emb|AL713933.6|CNS07YPE Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 104421

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 354   atgcaacagcagagggcaataaca 377
             ||||||||||||| ||||||||||
Sbjct: 73832 atgcaacagcagatggcaataaca 73809



to top

>emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119_B11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 122128

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 354   atgcaacagcagagggcaataaca 377
             ||||||||||||| ||||||||||
Sbjct: 13558 atgcaacagcagatggcaataaca 13535



to top

>emb|AJ006945.1|HSA569 Human P2Y1 gene
          Length = 16178

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   tcagtgctctcattcaccaa 489
             ||||||||||||||||||||
Sbjct: 14477 tcagtgctctcattcaccaa 14458



to top

>emb|AL732588.6| Mouse DNA sequence from clone RP24-159M19 on chromosome 2, complete
             sequence
          Length = 91977

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 388   gcagggccttgaggggctca 407
             ||||||||||||||||||||
Sbjct: 43028 gcagggccttgaggggctca 43047


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,305,189
Number of Sequences: 3902068
Number of extensions: 4305189
Number of successful extensions: 64113
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63906
Number of HSP's gapped (non-prelim): 188
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top