ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags9d19 |
|---|---|
| Clone Library Name | barley_pub |
>RBBP5_HUMAN (Q15291) Retinoblastoma-binding protein 5 (RBBP-5)| (Retinoblastoma-binding protein RBQ-3) Length = 538 Score = 81.6 bits (200), Expect = 1e-15 Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 5/160 (3%) Frame = +1 Query: 85 ATFDKHGDLIYVGNSKGEILIVDSKGIQVLGVIPIPGG----TVVKDIVFSRDGQYLLTN 252 A+FD+ G+ IY GN+KG+IL++ + ++ + G T +K I F+R G L N Sbjct: 157 ASFDRRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLIN 216 Query: 253 SNDRVIRVYENILPXXXXXXXXXXXXTSNNNEYPSKYEKLKANGARCLVFSCEVSDAIAK 432 + DR+IRVY+ T + P + E+ D + + Sbjct: 217 TADRIIRVYDG-----------REILTCGRDGEPEPMQ--------------ELQDLVNR 251 Query: 433 VQWKAPCFSGDAEWIVGASASKGEHRLHIWDRA-GRLIKI 549 WK CFSGD E+IV SA +H L+IW+++ G L+KI Sbjct: 252 TPWKKCCFSGDGEYIVAGSAR--QHALYIWEKSIGNLVKI 289
>YQS1_CAEEL (Q09309) Hypothetical WD-repeat protein F21H12.1| Length = 454 Score = 58.2 bits (139), Expect = 2e-08 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 1/165 (0%) Frame = +1 Query: 58 GSPPFTPTAATFDKHGDLIYVGNSKGEILIVDSKGIQVLGVIPIPGGTVVKDIVFSRDGQ 237 GS + + ++D+ G I G KG++LI +++ ++ + ++ I+ + Sbjct: 152 GSSDESASCVSYDRKGKYIIAGTGKGKLLIYNAETLKCVAWCKQNTVQQIRQIIVPMKSR 211 Query: 238 YLLTNSNDRVIRVYENILPXXXXXXXXXXXXTSNNNEYPSKYEKLKANGARCLVFSCEVS 417 +++TN+ DRVIR YE E L + + +V Sbjct: 212 FIITNTQDRVIRTYE--------------------------LEDLLHQRGQMVEAKYKVL 245 Query: 418 DAIAKVQWKAPCFSGDAEWIVGASASKGEHRLHIWD-RAGRLIKI 549 D + K WK C D ++ GAS H L+IW+ G LIKI Sbjct: 246 DMVNKAAWKNVCTDSDGLYVCGASTK--AHSLYIWESNTGSLIKI 288 Score = 30.4 bits (67), Expect = 3.4 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Frame = +1 Query: 91 FDKHGDLIYVGNSKGEILIVDSKGIQVLGVIP---IPGGTVVKDIVFSRDGQYLLTNSND 261 F++ G ++ VG + G +LI D + +P V + +SRDG+ LLT+S D Sbjct: 33 FNRWGSIVAVGCTDGRVLIYDFMTRNIARTFSAHCLP----VSCLSWSRDGRKLLTSSAD 88 Query: 262 RVIRVYE 282 I +++ Sbjct: 89 NSIAMFD 95
>SWD1_YEAST (P39706) COMPASS component SWD1 (Complex proteins associated with| SET1 protein SWD1) (Set1C component SWD1) Length = 426 Score = 47.8 bits (112), Expect = 2e-05 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 8/159 (5%) Frame = +1 Query: 97 KHGDLIYVGNSKGEI------LIVDSKGIQVLGVIPIPGGTVVKDIVFSRDGQYLLTNSN 258 KH ++I VG SKG + + ++ I L + + +K ++ S++G+ L N + Sbjct: 179 KHPNIIIVGTSKGWLDFYKFHSLYQTECIHSLKIT----SSNIKHLIVSQNGERLAINCS 234 Query: 259 DRVIRVYENILPXXXXXXXXXXXXTSNNNEYPSKYEKLKANGARCLVFSCEVSDAIAKVQ 438 DR IR YE S ++E N A L + D I K+Q Sbjct: 235 DRTIRQYE----------------ISIDDE----------NSAVELTLEHKYQDVINKLQ 268 Query: 439 WKAPCFSGD-AEWIVGASASKGEHRLHIWD-RAGRLIKI 549 W FS + AE++V ++ H L+IW+ +G L+++ Sbjct: 269 WNCILFSNNTAEYLVASTHGSSAHELYIWETTSGTLVRV 307 Score = 32.0 bits (71), Expect = 1.2 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%) Frame = +1 Query: 67 PFTPTAATFDKHGDLIYVGNSKGEILIVDSKGIQVLGVIPIPGGTV------VKDIVFSR 228 P F GD + +G + G ++I D + I +PG + + I +S Sbjct: 26 PLRTECLQFSPCGDYLALGCANGALVIYD---MDTFRPICVPGNMLGAHVRPITSIAWSP 82 Query: 229 DGQYLLTNSNDRVIRVYE 282 DG+ LLT+S D I++++ Sbjct: 83 DGRLLLTSSRDWSIKLWD 100
>WDR50_HUMAN (Q9Y5J1) WD-repeat protein 50| Length = 556 Score = 35.8 bits (81), Expect = 0.082 Identities = 19/66 (28%), Positives = 29/66 (43%) Frame = +1 Query: 82 AATFDKHGDLIYVGNSKGEILIVDSKGIQVLGVIPIPGGTVVKDIVFSRDGQYLLTNSND 261 A+TF +Y + GE+ + D + L G I SR+GQY+ SN Sbjct: 387 ASTFSSDSKKVYASSGDGEVYVWDVNSRKCLNRFVDEGSLYGLSIATSRNGQYVACGSNC 446 Query: 262 RVIRVY 279 V+ +Y Sbjct: 447 GVVNIY 452
>RCO1_NEUCR (P78706) Transcriptional repressor rco-1| Length = 604 Score = 34.3 bits (77), Expect = 0.24 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = +1 Query: 181 IPIPGGTVVKDIVFSRDGQYLLTNSNDRVIRVYE 282 I + G ++ + FS DG+YL T + D++IRV++ Sbjct: 339 IDLTGDLYIRSVCFSPDGKYLATGAEDKLIRVWD 372
>Y1410_SYNY3 (P73595) Hypothetical WD-repeat protein slr1410| Length = 334 Score = 34.3 bits (77), Expect = 0.24 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 6/99 (6%) Frame = +1 Query: 1 VSASDNGNVPAPNSRKFSDGSPPFTPTAA------TFDKHGDLIYVGNSKGEILIVDSKG 162 V++SD+G + ++ K P FT T F+ +LI V GEI +++ G Sbjct: 157 VTSSDDGTIEGWSNIK----EPLFTVTRPGVSRNMDFNAQTNLIAVTQDIGEITLLNPAG 212 Query: 163 IQVLGVIPIPGGTVVKDIVFSRDGQYLLTNSNDRVIRVY 279 +V+ +I G + D+ FS+DG+ L+T D RV+ Sbjct: 213 -KVVRIIETDQGRL-NDVDFSQDGKLLVTAGFDGTARVF 249
>TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subunit 5| (Transcription initiation factor TFIID 100 kDa subunit) (TAF(II)100) (TAFII-100) (TAFII100) Length = 800 Score = 32.7 bits (73), Expect = 0.69 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = +1 Query: 88 TFDKHGDLIYVGNSKGEILIVDSKGIQVLGVIPIPGGTVVKDIVFSRDGQYLLTNSNDRV 267 TF +G + G + G +L+ D ++G + TV + FSRDG+ L + S D Sbjct: 676 TFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCS-LRFSRDGEILASGSMDNT 734 Query: 268 IRVYENI 288 +R+++ I Sbjct: 735 VRLWDAI 741
>STRAP_HUMAN (Q9Y3F4) Serine-threonine kinase receptor-associated protein| (UNR-interacting protein) (WD-40 repeat protein PT-WD) (MAP activator with WD repeats) Length = 350 Score = 32.7 bits (73), Expect = 0.69 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +1 Query: 202 VVKDIVFSRDGQYLLTNSNDRVIRVYE 282 +VK + F++D YLLT D+++R+Y+ Sbjct: 102 IVKTVDFTQDSNYLLTGGQDKLLRIYD 128
>STRAP_MOUSE (Q9Z1Z2) Serine-threonine kinase receptor-associated protein| (UNR-interacting protein) Length = 351 Score = 32.7 bits (73), Expect = 0.69 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +1 Query: 202 VVKDIVFSRDGQYLLTNSNDRVIRVYE 282 +VK + F++D YLLT D+++R+Y+ Sbjct: 102 IVKTVDFTQDSNYLLTGGQDKLLRIYD 128
>TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subunit 5| (Transcription initiation factor TFIID 100 kDa subunit) (TAF(II)100) (TAFII-100) (TAFII100) Length = 801 Score = 32.3 bits (72), Expect = 0.90 Identities = 19/67 (28%), Positives = 35/67 (52%) Frame = +1 Query: 88 TFDKHGDLIYVGNSKGEILIVDSKGIQVLGVIPIPGGTVVKDIVFSRDGQYLLTNSNDRV 267 TF +G + G + G +L+ D ++G + TV + FSRDG+ L + S D Sbjct: 677 TFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCS-LRFSRDGEILASGSMDNT 735 Query: 268 IRVYENI 288 +R+++ + Sbjct: 736 VRLWDAV 742
>YS44_CAEEL (Q09372) Hypothetical protein ZK177.4| Length = 655 Score = 32.3 bits (72), Expect = 0.90 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Frame = +1 Query: 67 PFTPTAAT-FDKHGDLIYVGNSKGEILIVDSKGIQVLGVIPIPGGTVVKDIVFSRDGQYL 243 P TPT+ +DK+ +YVG + + +K + +L IP +++I+ S++G Y+ Sbjct: 18 PLTPTSVIIYDKNELKVYVGFTNNRNSLEYTKEVVLLLSTEIPKKAEIREIIVSKNGDYV 77 Query: 244 L 246 + Sbjct: 78 I 78
>MMPL4_MYCLE (P54881) Putative membrane protein mmpL4| Length = 959 Score = 32.0 bits (71), Expect = 1.2 Identities = 32/144 (22%), Positives = 55/144 (38%) Frame = +1 Query: 61 SPPFTPTAATFDKHGDLIYVGNSKGEILIVDSKGIQVLGVIPIPGGTVVKDIVFSRDGQY 240 SP P+ K G + GNS I+IV +G + LG D + Sbjct: 59 SPKDAPSYIAMQKMGQVFNEGNSDSVIMIV-LEGDKPLG-----------------DDAH 100 Query: 241 LLTNSNDRVIRVYENILPXXXXXXXXXXXXTSNNNEYPSKYEKLKANGARCLVFSCEVSD 420 + R +R +++ + +N+ + Y +L G + + + E D Sbjct: 101 RFYDGLIRKLRADKHVQSVQDFWGDPLTAPGAQSNDGKAAYVQLSLAGNQGELLAQESID 160 Query: 421 AIAKVQWKAPCFSGDAEWIVGASA 492 A+ K+ + P G W+ GASA Sbjct: 161 AVRKIVVQTPAPPGITAWVTGASA 184
>Y355_HAEIN (Q57306) Hypothetical ABC transporter permease protein HI0355| Length = 245 Score = 32.0 bits (71), Expect = 1.2 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -2 Query: 191 GMGITPSTWMPFESTINISPLELPTYIRSPCLSNVAAVGVK 69 G+ TP W+ T NISPL L +R P A G++ Sbjct: 138 GLRNTPQAWLDLAKTFNISPLRLLLKVRLPAALPAFASGLR 178
>WDR50_MOUSE (Q5SSI6) WD-repeat protein 50| Length = 552 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/66 (25%), Positives = 28/66 (42%) Frame = +1 Query: 82 AATFDKHGDLIYVGNSKGEILIVDSKGIQVLGVIPIPGGTVVKDIVFSRDGQYLLTNSND 261 A+TF IY + GE+ + D + + G I S++GQY+ S Sbjct: 383 ASTFSSDSKRIYTYSENGEVYVWDVNSRKCMNRFLDEGSLCGLSIAASKNGQYVACGSKS 442 Query: 262 RVIRVY 279 V+ +Y Sbjct: 443 GVVNIY 448
>BORG5_MOUSE (Q91W92) Cdc42 effector protein 1 (Binder of Rho GTPases 5)| Length = 409 Score = 25.4 bits (54), Expect(2) = 1.7 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = +3 Query: 144 NCRFERHPSTWGNSHPRWNS 203 N F+RH ++WG S W + Sbjct: 323 NMTFDRHGASWGASRASWGA 342 Score = 24.6 bits (52), Expect(2) = 1.7 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +1 Query: 28 PAPNSRKFSDGSPPFTPTAATFDKHG 105 PA ++ G P P+ TFD+HG Sbjct: 305 PAAEAKPSPVGEGPQVPSNMTFDRHG 330
>TUP1_YEAST (P16649) Glucose repression regulatory protein TUP1 (Flocculation| suppressor protein) (Repressor AER2) Length = 713 Score = 31.2 bits (69), Expect = 2.0 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +1 Query: 154 SKGIQVLGVIPIPGGTV-VKDIVFSRDGQYLLTNSNDRVIRVYE 282 +K ++ L P + ++ + FS DG++L T + DR+IR+++ Sbjct: 428 AKDVENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 471
>TUP11_SCHPO (Q09715) Transcriptional repressor tup11| Length = 614 Score = 30.8 bits (68), Expect = 2.6 Identities = 12/26 (46%), Positives = 20/26 (76%) Frame = +1 Query: 205 VKDIVFSRDGQYLLTNSNDRVIRVYE 282 V+ I FS DG+YL+T + DR I++++ Sbjct: 363 VRTIAFSPDGKYLVTGTEDRQIKLWD 388
>YZLL_CAEEL (Q93847) Hypothetical WD-repeat protein K04G11.4| Length = 395 Score = 30.8 bits (68), Expect = 2.6 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +1 Query: 91 FDKHGDLIYVGNSKGEILIVDSKGIQVLGVIPIPGGT-VVKDIVFSRDGQYLLTNSNDRV 267 F+ G LI G+ I I ++ + IPG V + F+RDG YL + S D + Sbjct: 198 FNPSGTLIASGSFDETIRIWCARNGNT--IFSIPGHEDPVSSVCFNRDGAYLASGSYDGI 255 Query: 268 IRVYEN 285 +R++++ Sbjct: 256 VRIWDS 261
>TUP12_SCHPO (Q9UUG8) Transcriptional repressor tup12| Length = 586 Score = 30.4 bits (67), Expect = 3.4 Identities = 17/63 (26%), Positives = 32/63 (50%) Frame = +1 Query: 91 FDKHGDLIYVGNSKGEILIVDSKGIQVLGVIPIPGGTVVKDIVFSRDGQYLLTNSNDRVI 270 F K G + G+ + + D + + ++ G V ++FS DGQ++ S D+VI Sbjct: 384 FSKDGKTLVSGSGDRTVCLWDVEAGEQKLILHTDDG--VTTVMFSPDGQFIAAGSLDKVI 441 Query: 271 RVY 279 R++ Sbjct: 442 RIW 444 Score = 30.4 bits (67), Expect = 3.4 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +1 Query: 193 GGTVVKDIVFSRDGQYLLTNSNDRVIRVYE 282 G V+ + FS DG+YL T D+ IR+++ Sbjct: 333 GDLYVRSVAFSPDGKYLATGVEDQQIRIWD 362
>AHI1_RAT (Q6DTM3) Jouberin (Abelson helper integration site 1 protein| homolog) (AHI-1) Length = 1047 Score = 30.0 bits (66), Expect = 4.5 Identities = 11/28 (39%), Positives = 22/28 (78%) Frame = +1 Query: 202 VVKDIVFSRDGQYLLTNSNDRVIRVYEN 285 ++ D+ +S+D +YL+T+S+D RV++N Sbjct: 507 IIYDLDWSKDDRYLVTSSSDGTARVWKN 534
>AHI1_MOUSE (Q8K3E5) Jouberin (Abelson helper integration site 1 protein)| (AHI-1) Length = 1047 Score = 30.0 bits (66), Expect = 4.5 Identities = 11/28 (39%), Positives = 22/28 (78%) Frame = +1 Query: 202 VVKDIVFSRDGQYLLTNSNDRVIRVYEN 285 ++ D+ +S+D +YL+T+S+D RV++N Sbjct: 506 IIYDLDWSKDDRYLVTSSSDGTARVWKN 533
>GBLP_CAEEL (Q21215) Guanine nucleotide-binding protein beta subunit 2-like 1| Length = 324 Score = 30.0 bits (66), Expect = 4.5 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 13/89 (14%) Frame = +1 Query: 55 DGSPPFTPTAATFDKHGDLIYVGNSKGEILIVDSKGIQVLGVIPIPGGTV---------- 204 +G + AT+ ++ + +S+ + ++V V V P+ G + Sbjct: 12 EGHTGWVTQIATYTRNDKTTVLSSSRDKTILV----WDVDSVAPVDEGPIGRPVRSLTGH 67 Query: 205 ---VKDIVFSRDGQYLLTNSNDRVIRVYE 282 V D+V S DGQ+ L+ S D+ +R+++ Sbjct: 68 NHFVSDVVISSDGQFALSGSWDKTLRLWD 96
>AHI1_HUMAN (Q8N157) Jouberin (Abelson helper integration site 1 protein| homolog) (AHI-1) Length = 1196 Score = 30.0 bits (66), Expect = 4.5 Identities = 10/28 (35%), Positives = 21/28 (75%) Frame = +1 Query: 202 VVKDIVFSRDGQYLLTNSNDRVIRVYEN 285 ++ D+ +S+D Y+LT+S+D R+++N Sbjct: 656 IIYDLSWSKDDHYILTSSSDGTARIWKN 683
>TNR1A_BOVIN (O19131) Tumor necrosis factor receptor superfamily member 1A| precursor (p60) (TNF-R1) (TNF-RI) (TNFR-I) (p55) Length = 471 Score = 30.0 bits (66), Expect = 4.5 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = -2 Query: 230 SLLKTMSLTTVPPGMGITPSTWMPFESTINISPLELPTYIRSPCLSNVAAVGVKGGE 60 +L+K + P G P+T + F ST + SP+ +P YI S SN AV E Sbjct: 251 TLVKEGEPELLVPAPGFNPTTTICFSSTPSSSPVSIPPYI-SCDRSNFGAVASPSSE 306
>DIP2_YEAST (Q12220) DOM34-interacting protein 2 (U3 small nucleolar| RNA-associated protein 12) (U3 snoRNA-associated protein 12) Length = 943 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/60 (23%), Positives = 29/60 (48%) Frame = +1 Query: 103 GDLIYVGNSKGEILIVDSKGIQVLGVIPIPGGTVVKDIVFSRDGQYLLTNSNDRVIRVYE 282 G L+ +G GE+ + D +L I + + + DG+ L+T S D+ ++ ++ Sbjct: 442 GLLVILGTRNGELQLFDLASSSLLDTIEDAHDAAIWSLDLTSDGKRLVTGSADKTVKFWD 501
>XYLS_SULSO (Q9P999) Alpha-xylosidase (EC 3.2.1.-)| Length = 731 Score = 29.6 bits (65), Expect = 5.9 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = +1 Query: 13 DNGNVPAPNSRKFSDGSPPFTPTAATFDKHGDLIYVGNSKGEILIVDSKG 162 DN V PN K S P+ +F + + S GE+++ D+KG Sbjct: 31 DNSLVVLPNLEKLSIKGESTGPSIISFSSESLSVDINTSNGELIMKDNKG 80
>WDR57_PONPY (Q5RF51) WD-repeat protein 57| Length = 357 Score = 29.6 bits (65), Expect = 5.9 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%) Frame = +1 Query: 4 SASDNGNVPAPNSRK---FSDGSPPFTPTAATFDKHGDLIYVGNSKGEILIVDSKGIQVL 174 + SD+G V + RK + A TF+ D I G +I + D + ++ Sbjct: 169 TGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLT 228 Query: 175 GVIPIPGGTVVKDIVFSRDGQYLLTNSNDRVIRVYE 282 + +V + S +G YLL+N+ D +RV++ Sbjct: 229 YTMRGHADSVT-GLSLSSEGSYLLSNAMDNTVRVWD 263
>WDR57_HUMAN (Q96DI7) WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP) (U5| snRNP-specific 40 kDa protein) (38 kDa splicing factor) Length = 357 Score = 29.6 bits (65), Expect = 5.9 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%) Frame = +1 Query: 4 SASDNGNVPAPNSRK---FSDGSPPFTPTAATFDKHGDLIYVGNSKGEILIVDSKGIQVL 174 + SD+G V + RK + A TF+ D I G +I + D + ++ Sbjct: 169 TGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLT 228 Query: 175 GVIPIPGGTVVKDIVFSRDGQYLLTNSNDRVIRVYE 282 + +V + S +G YLL+N+ D +RV++ Sbjct: 229 YTMRGHADSVT-GLSLSSEGSYLLSNAMDNTVRVWD 263
>TUP1_KLULA (P56094) Transcriptional repressor TUP1| Length = 682 Score = 29.6 bits (65), Expect = 5.9 Identities = 9/26 (34%), Positives = 20/26 (76%) Frame = +1 Query: 205 VKDIVFSRDGQYLLTNSNDRVIRVYE 282 ++ + FS DG++L T + D++IR+++ Sbjct: 409 IRSVCFSPDGKFLATGAEDKLIRIWD 434
>ENW1_PONPY (P61564) ERV-W1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (ERVWE1 envelope protein) (Syncytin) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 538 Score = 29.6 bits (65), Expect = 5.9 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 9/42 (21%) Frame = +1 Query: 19 GNVPAPNSRKFSDGSPPFTP---------TAATFDKHGDLIY 117 GN+ AP+ R FS G+P FT +AT HG+ Y Sbjct: 45 GNIDAPSYRSFSKGTPTFTAHTHMPRNCYNSATLCMHGNTHY 86
>NPL4_YEAST (P33755) Protein NPL4| Length = 580 Score = 29.6 bits (65), Expect = 5.9 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = -2 Query: 518 MCNLCSPLLAEAPTIHSASPLKHGAFHCTFAMASETSQEK 399 MC CSPL H + +KH +FH +E + +K Sbjct: 144 MCEYCSPLPPWDKEYHEKNKIKHISFHSYLKKLNENANKK 183
>GBLP_CHLRE (P25387) Guanine nucleotide-binding protein beta subunit-like| protein Length = 318 Score = 29.6 bits (65), Expect = 5.9 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +1 Query: 205 VKDIVFSRDGQYLLTNSNDRVIRVYE 282 V+D+V S DGQ+ LT S D +R+++ Sbjct: 67 VQDVVISSDGQFCLTGSWDGTLRLWD 92
>PAN2_YEAST (P53010) PAB-dependent poly(A)-specific ribonuclease subunit PAN2| (EC 3.1.13.4) (PAB1P-dependent poly(A)-nuclease) Length = 1115 Score = 29.6 bits (65), Expect = 5.9 Identities = 23/61 (37%), Positives = 31/61 (50%) Frame = +1 Query: 79 TAATFDKHGDLIYVGNSKGEILIVDSKGIQVLGVIPIPGGTVVKDIVFSRDGQYLLTNSN 258 TA +FD+ +LI+ G+S G I D GG VKDI+ RDG +L+ S Sbjct: 33 TAISFDEKANLIWSGDSYGCISSYDPTFQLYTRYRGHIGGNSVKDILSHRDG--ILSISE 90 Query: 259 D 261 D Sbjct: 91 D 91
>HETE1_PODAN (Q00808) Vegetatible incompatibility protein HET-E-1| Length = 1356 Score = 29.6 bits (65), Expect = 5.9 Identities = 18/69 (26%), Positives = 33/69 (47%) Frame = +1 Query: 82 AATFDKHGDLIYVGNSKGEILIVDSKGIQVLGVIPIPGGTVVKDIVFSRDGQYLLTNSND 261 + F G + G+ I I D+ + GG V + +VFS DGQ + + S+D Sbjct: 1014 SVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWV-QSVVFSPDGQRVASGSDD 1072 Query: 262 RVIRVYENI 288 I++++ + Sbjct: 1073 HTIKIWDAV 1081
>GBLP_BIOGL (Q93134) Guanine nucleotide-binding protein beta subunit 2-like 1| (Receptor of activated protein kinase C) (RACK) Length = 316 Score = 29.3 bits (64), Expect = 7.7 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +1 Query: 196 GTVVKDIVFSRDGQYLLTNSNDRVIRVYE 282 G V D++ S DGQ+ L+ S D +R+++ Sbjct: 63 GHFVSDVILSSDGQFALSGSWDHTLRLWD 91
>TUP1_CANAL (P56093) Transcriptional repressor TUP1| Length = 514 Score = 29.3 bits (64), Expect = 7.7 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = +1 Query: 193 GGTVVKDIVFSRDGQYLLTNSNDRVIRVYE 282 G ++ + FS DG+ L T + D++IR+++ Sbjct: 256 GDLYIRSVCFSPDGKLLATGAEDKLIRIWD 285
>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1887 Score = 29.3 bits (64), Expect = 7.7 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +1 Query: 10 SDNGNVPAPNSRKFSDGSPPFTPTAATF 93 S N ++ +P+S K+S SP +TPTA + Sbjct: 1826 SPNMSIYSPSSTKYSPTSPTYTPTARNY 1853
>HIRL_SCHPO (P87314) Histone transcription regulator 1 homolog| Length = 932 Score = 29.3 bits (64), Expect = 7.7 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = +1 Query: 205 VKDIVFSRDGQYLLTNSNDRVIRVY--ENILPXXXXXXXXXXXXTSNNNEY 351 V + FS +GQYL + S+DRV+ ++ E +P T N Y Sbjct: 77 VTSVRFSPNGQYLASGSDDRVVIIWHKEEAIPGLGSTFGSGEKHTENWRSY 127
>WDR57_MOUSE (Q6PE01) WD-repeat protein 57| Length = 358 Score = 29.3 bits (64), Expect = 7.7 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%) Frame = +1 Query: 4 SASDNGNVPAPNSRK---FSDGSPPFTPTAATFDKHGDLIYVGNSKGEILIVDSKGIQVL 174 + SD+G V + RK + A TF+ D I G +I + D + ++ Sbjct: 170 TGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLT 229 Query: 175 GVIPIPGGTVVKDIVFSRDGQYLLTNSNDRVIRVYE 282 + +V + S +G YLL+N+ D +RV++ Sbjct: 230 YTMRGHADSVT-GLSLSSEGSYLLSNAMDNTVRVWD 264
>Y751_OCEIH (Q8ES91) Putative adenine deaminase OB0751 (EC 3.5.4.2) (Adenase)| (Adenine aminase) Length = 579 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = +1 Query: 61 SPPFTPTAATFDKHGDLIYVGNSKGEILIVDSKGIQVL-GVIPIPGGTVVKDIVFSRDG 234 +P +++ GD+I +GNSK +I I ++ ++ G+I + G ++ +I + G Sbjct: 453 APKLGALISSYSASGDIIIIGNSKKDIFIAWNRLKEIKGGIILVNNGEILTEIPLTLGG 511
>GBLP_DICDI (P46800) Guanine nucleotide-binding protein beta subunit-like| protein Length = 329 Score = 29.3 bits (64), Expect = 7.7 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +1 Query: 205 VKDIVFSRDGQYLLTNSNDRVIRVYE 282 V+D+V S DGQ+ L+ S D +R+++ Sbjct: 73 VQDVVISHDGQFALSGSWDNTLRLWD 98
>RFAF_HAEIN (P45042) ADP-heptose--LPS heptosyltransferase 2 (EC 2.-.-.-)| (ADP-heptose--LPS heptosyltransferase II) Length = 346 Score = 28.9 bits (63), Expect = 10.0 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%) Frame = -2 Query: 512 NLCSPLLAEAPTIHSA--SPLKHGAF 441 N C PLLA P + A PL HGAF Sbjct: 39 NWCKPLLARMPEVRKAIEMPLGHGAF 64
>ENW1_GORGO (P61561) ERV-W1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (ERVWE1 envelope protein) (Syncytin) (Syncytin-1) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 538 Score = 28.9 bits (63), Expect = 10.0 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +1 Query: 19 GNVPAPNSRKFSDGSPPFT 75 GN+ AP+ R FS G+P FT Sbjct: 45 GNIDAPSHRSFSKGTPTFT 63
>MSOX_STRSB (P40854) Monomeric sarcosine oxidase (EC 1.5.3.1) (MSOX)| Length = 388 Score = 28.9 bits (63), Expect = 10.0 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +1 Query: 151 DSKGIQVLGVIPIPGGTVVKDIVFSRDGQYLLTNSNDRVIRVYE 282 D+ G+QV G I G + F R GQ+ + DR + +E Sbjct: 246 DADGVQVYGFPAIDGPEKGAKVAFFRKGQHTTPETIDRTVHAHE 289
>APAF_RAT (Q9EPV5) Apoptotic protease-activating factor 1 (Apaf-1)| Length = 1249 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +1 Query: 205 VKDIVFSRDGQYLLTNSNDRVIRVYE 282 V ++FS DG LT S+D+ IRV+E Sbjct: 885 VHGVMFSPDGSSFLTASDDQTIRVWE 910
>APAF_MOUSE (O88879) Apoptotic protease-activating factor 1 (Apaf-1)| Length = 1249 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +1 Query: 205 VKDIVFSRDGQYLLTNSNDRVIRVYE 282 V ++FS DG LT S+D+ IRV+E Sbjct: 885 VHGVMFSPDGSSFLTASDDQTIRVWE 910
>UVRC_MYCTU (P67426) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 646 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +1 Query: 25 VPAPNSRKFSDGSPPFTPTAATF-DKHGDLIYVGNSK 132 +P P + + + GS P P F D+HG +IYVG +K Sbjct: 1 MPDPATYRPAPGSIPVEPGVYRFRDQHGRVIYVGKAK 37
>UVRC_MYCBO (P67427) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 646 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +1 Query: 25 VPAPNSRKFSDGSPPFTPTAATF-DKHGDLIYVGNSK 132 +P P + + + GS P P F D+HG +IYVG +K Sbjct: 1 MPDPATYRPAPGSIPVEPGVYRFRDQHGRVIYVGKAK 37
>PLXA1_HUMAN (Q9UIW2) Plexin-A1 precursor (Semaphorin receptor NOV)| Length = 1896 Score = 28.9 bits (63), Expect = 10.0 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 8/94 (8%) Frame = +1 Query: 19 GNVPAPNSRKFSDGSPPFTPTAATFDKHGDLIYVGNSKGEI--LIVDSKG------IQVL 174 G V + F D T AA + +++ G G I ++VD + Sbjct: 417 GTVTIEGTPLFVDKDDGLTAVAAYDYRGRTVVFAGTRSGRIRKILVDLSNPGGRPALAYE 476 Query: 175 GVIPIPGGTVVKDIVFSRDGQYLLTNSNDRVIRV 276 V+ G +++D+V S + QYL + +V RV Sbjct: 477 SVVAQEGSPILRDLVLSPNHQYLYAMTEKQVTRV 510 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,001,953 Number of Sequences: 219361 Number of extensions: 1667055 Number of successful extensions: 5278 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 5010 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5273 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
