Clone Information

BLAST Search Result

Clone Name	bags9d19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_470591.1\| Oryza sativa (japonica cultivar-group), predic...	325	9e-86
2	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	325	9e-86
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	325	9e-86
4	gb\|AC105928.2\| Oryza sativa (japonica cultivar-group) chromosome...	325	9e-86
5	dbj\|AK111888.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	325	9e-86
6	dbj\|AK111713.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	325	9e-86
7	gb\|AC144476.11\| Medicago truncatula clone mth2-10a6, complete se...	70	8e-09
8	gb\|AC147431.19\| Medicago truncatula clone mth2-88g17, complete s...	70	8e-09
9	gb\|AY463022.1\| Musa acuminata transducin/WD-40 repeat family-lik...	50	0.008
10	gb\|AC099337.2\| Homo sapiens chromosome 1 clone RP11-365M20, comp...	46	0.12
11	gb\|AC009758.8\| Homo sapiens chromosome 11, clone RP11-101E4, com...	46	0.12
12	gb\|AC010930.9\| Homo sapiens chromosome 11, clone RP11-54I6, comp...	46	0.12
13	gb\|AC022368.2\|AC022368 Mus musculus strain C57BL6/J clone RP23-1...	44	0.48
14	gb\|AC102452.7\| Mus musculus chromosome 5, clone RP24-272L20, com...	44	0.48
15	ref\|XM_413962.1\| PREDICTED: Gallus gallus similar to KIAA0856 pr...	42	1.9
16	gb\|AC105600.5\| Rattus norvegicus 4 BAC CH230-209E1 (Children's H...	42	1.9
17	gb\|AC099673.2\| Homo sapiens chromosome 1 clone RP11-109H10, comp...	42	1.9
18	gb\|DQ015913.1\| Caprine arthritis-encephalitis virus isolate G806...	42	1.9
19	gb\|AC109201.12\| Mus musculus chromosome 15, clone RP23-18P10, co...	40	7.4
20	gb\|AF528565.1\| Zea mays cultivar BSSS53 chromosome 4 clone BAC 0...	40	7.4
21	gb\|AC165072.13\| Mus musculus chromosome 18, clone RP23-345E17, c...	40	7.4
22	gb\|AC140267.2\| Mus musculus BAC clone RP24-303O5 from chromosome...	40	7.4
23	gb\|AC161199.4\| Mus musculus chromosome 15, clone RP23-383D13, co...	40	7.4
24	gb\|AC091396.4\| Mus musculus strain C57BL6/J chromosome 6 clone R...	40	7.4
25	emb\|CT030314.1\| Xenopus tropicalis finished cDNA, clone TEgg078n06	40	7.4
26	gb\|AC009468.3\| Homo sapiens BAC clone GS1-278J22 from 7, complet...	40	7.4
27	gb\|AY843756.1\| Scinax catharinae 12S ribosomal RNA gene, partial...	40	7.4
28	gb\|AC142323.1\| Pan troglodytes BAC clone RP43-72N8 from 7, compl...	40	7.4
29	emb\|BX322532.2\| Human DNA sequence from clone RP11-543A11 on chr...	40	7.4
30	emb\|AL365501.11\| Human DNA sequence from clone RP13-27G4 on chro...	40	7.4
31	emb\|AL355858.14\| Human DNA sequence from clone RP11-30A6 on chro...	40	7.4
32	gb\|AC087354.13\| Homo sapiens chromosome 8, clone RP11-398H6, com...	40	7.4
33	emb\|AL137857.29\| Human DNA sequence from clone RP5-1166H10 on ch...	40	7.4
34	gb\|CP000087.1\| Rickettsia bellii RML369-C, complete genome	40	7.4
35	gb\|BC017506.1\|BC017506 Homo sapiens, clone IMAGE:4901582, mRNA, ...	40	7.4
36	gb\|AC053480.5\|AC053480 Homo sapiens chromosome 8, clone RP11-526...	40	7.4
37	gb\|AC073244.13\| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Canc...	40	7.4
38	ref\|NM_002379.2\| Homo sapiens matrilin 1, cartilage matrix prote...	40	7.4
39	emb\|AL451051.6\| Human DNA sequence from clone RP11-293L15 on chr...	40	7.4
40	dbj\|AP003382.3\| Homo sapiens genomic DNA, chromosome 11 clone:CT...	40	7.4
41	dbj\|AP000817.4\| Homo sapiens genomic DNA, chromosome 11q clone:C...	40	7.4
42	gb\|AC005799.1\|AC005799 Homo sapiens chromosome 17, clone hRPK.62...	40	7.4
43	emb\|AL929144.10\| Mouse DNA sequence from clone RP23-441D24 on ch...	40	7.4
44	gb\|M55675.1\|HUMCMP1 Human cartilage matrix protein (CMP) gene, e...	40	7.4

>ref|XM_470591.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1713

 Score =  325 bits (164), Expect = 9e-86
 Identities = 254/284 (89%)
 Strand = Plus / Plus

                                                                       
Query: 45  taaattttcggatggttctcctccttttacaccaactgctgcaacgtttgataagcatgg 104
           ||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||| ||||
Sbjct: 498 taaattttctgatggttctccaccttttacaccaactgctgcaacatttgacaagtatgg 557

                                                                       
Query: 105 agatctgatatatgtgggcaattccaagggagagatattaattgtagattcgaaaggcat 164
            |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 558 ggatctgatatatgtgggcaattccaagggagagatattaattatagattcaaaaagcat 617

                                                                       
Query: 165 ccaagtacttggggtaattcccatcccaggtggaacagttgttaaggacattgttttcag 224
           | | |||| ||  || ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 618 caaggtacatgctgtgattcccatcccaggtggaacagtagttaaggatattgttttcag 677

                                                                       
Query: 225 cagagatggccaatatctgctaacgaactctaatgatcgtgtcattagagtctatgagaa 284
           ||| ||||||| |||||| || || |||||||||||||| || |||||||||||||| ||
Sbjct: 678 cagggatggccgatatctactcacaaactctaatgatcgggtgattagagtctatgataa 737

                                                       
Query: 285 tattctgcctattaaaggttctgggaaggagattgaaaaaataa 328
           | |||||||| |||||||||||||  ||||||| ||||||||||
Sbjct: 738 tcttctgcctgttaaaggttctggagaggagatagaaaaaataa 781



 Score =  163 bits (82), Expect = 7e-37
 Identities = 157/182 (86%)
 Strand = Plus / Plus

                                                                       
Query: 364 gagaagctgaaagcaaatggtgcacgctgcctagttttttcttgtgaagtctcagatgcc 423
           |||||||| ||||||||||||||| ||||||||| | ||||||||||| | |  ||||| 
Sbjct: 814 gagaagctaaaagcaaatggtgcaagctgcctagctatttcttgtgaacttttggatgct 873

                                                                       
Query: 424 attgcaaaggtacagtggaaggcaccatgcttcagtggcgatgctgagtggatcgttggt 483
           || |||||| ||| |||||||||||||||||| ||||| |||  ||||||||| ||||||
Sbjct: 874 atcgcaaagataccgtggaaggcaccatgctttagtggtgatagtgagtggattgttggt 933

                                                                       
Query: 484 gcttctgcaagcaaaggagagcacaggttgcacatatgggaccgagcagggcgtcttata 543
           ||||| |||||||||||||||||||| |||  ||||||| ||||| |||| |||||| ||
Sbjct: 934 gcttcagcaagcaaaggagagcacagattgtgcatatggaaccgatcaggacgtcttgta 993

             
Query: 544 aa 545
           ||
Sbjct: 994 aa 995

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  325 bits (164), Expect = 9e-86
 Identities = 254/284 (89%)
 Strand = Plus / Minus

                                                                           
Query: 45      taaattttcggatggttctcctccttttacaccaactgctgcaacgtttgataagcatgg 104
               ||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||| ||||
Sbjct: 5616587 taaattttctgatggttctccaccttttacaccaactgctgcaacatttgacaagtatgg 5616528

                                                                           
Query: 105     agatctgatatatgtgggcaattccaagggagagatattaattgtagattcgaaaggcat 164
                |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 5616527 ggatctgatatatgtgggcaattccaagggagagatattaattatagattcaaaaagcat 5616468

                                                                           
Query: 165     ccaagtacttggggtaattcccatcccaggtggaacagttgttaaggacattgttttcag 224
               | | |||| ||  || ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 5616467 caaggtacatgctgtgattcccatcccaggtggaacagtagttaaggatattgttttcag 5616408

                                                                           
Query: 225     cagagatggccaatatctgctaacgaactctaatgatcgtgtcattagagtctatgagaa 284
               ||| ||||||| |||||| || || |||||||||||||| || |||||||||||||| ||
Sbjct: 5616407 cagggatggccgatatctactcacaaactctaatgatcgggtgattagagtctatgataa 5616348

                                                           
Query: 285     tattctgcctattaaaggttctgggaaggagattgaaaaaataa 328
               | |||||||| |||||||||||||  ||||||| ||||||||||
Sbjct: 5616347 tcttctgcctgttaaaggttctggagaggagatagaaaaaataa 5616304



 Score =  163 bits (82), Expect = 7e-37
 Identities = 157/182 (86%)
 Strand = Plus / Minus

                                                                           
Query: 364     gagaagctgaaagcaaatggtgcacgctgcctagttttttcttgtgaagtctcagatgcc 423
               |||||||| ||||||||||||||| ||||||||| | ||||||||||| | |  ||||| 
Sbjct: 5616271 gagaagctaaaagcaaatggtgcaagctgcctagctatttcttgtgaacttttggatgct 5616212

                                                                           
Query: 424     attgcaaaggtacagtggaaggcaccatgcttcagtggcgatgctgagtggatcgttggt 483
               || |||||| ||| |||||||||||||||||| ||||| |||  ||||||||| ||||||
Sbjct: 5616211 atcgcaaagataccgtggaaggcaccatgctttagtggtgatagtgagtggattgttggt 5616152

                                                                           
Query: 484     gcttctgcaagcaaaggagagcacaggttgcacatatgggaccgagcagggcgtcttata 543
               ||||| |||||||||||||||||||| |||  ||||||| ||||| |||| |||||| ||
Sbjct: 5616151 gcttcagcaagcaaaggagagcacagattgtgcatatggaaccgatcaggacgtcttgta 5616092

                 
Query: 544     aa 545
               ||
Sbjct: 5616091 aa 5616090

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  325 bits (164), Expect = 9e-86
 Identities = 254/284 (89%)
 Strand = Plus / Minus

                                                                           
Query: 45      taaattttcggatggttctcctccttttacaccaactgctgcaacgtttgataagcatgg 104
               ||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||| ||||
Sbjct: 5615800 taaattttctgatggttctccaccttttacaccaactgctgcaacatttgacaagtatgg 5615741

                                                                           
Query: 105     agatctgatatatgtgggcaattccaagggagagatattaattgtagattcgaaaggcat 164
                |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 5615740 ggatctgatatatgtgggcaattccaagggagagatattaattatagattcaaaaagcat 5615681

                                                                           
Query: 165     ccaagtacttggggtaattcccatcccaggtggaacagttgttaaggacattgttttcag 224
               | | |||| ||  || ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 5615680 caaggtacatgctgtgattcccatcccaggtggaacagtagttaaggatattgttttcag 5615621

                                                                           
Query: 225     cagagatggccaatatctgctaacgaactctaatgatcgtgtcattagagtctatgagaa 284
               ||| ||||||| |||||| || || |||||||||||||| || |||||||||||||| ||
Sbjct: 5615620 cagggatggccgatatctactcacaaactctaatgatcgggtgattagagtctatgataa 5615561

                                                           
Query: 285     tattctgcctattaaaggttctgggaaggagattgaaaaaataa 328
               | |||||||| |||||||||||||  ||||||| ||||||||||
Sbjct: 5615560 tcttctgcctgttaaaggttctggagaggagatagaaaaaataa 5615517



 Score =  163 bits (82), Expect = 7e-37
 Identities = 157/182 (86%)
 Strand = Plus / Minus

                                                                           
Query: 364     gagaagctgaaagcaaatggtgcacgctgcctagttttttcttgtgaagtctcagatgcc 423
               |||||||| ||||||||||||||| ||||||||| | ||||||||||| | |  ||||| 
Sbjct: 5615484 gagaagctaaaagcaaatggtgcaagctgcctagctatttcttgtgaacttttggatgct 5615425

                                                                           
Query: 424     attgcaaaggtacagtggaaggcaccatgcttcagtggcgatgctgagtggatcgttggt 483
               || |||||| ||| |||||||||||||||||| ||||| |||  ||||||||| ||||||
Sbjct: 5615424 atcgcaaagataccgtggaaggcaccatgctttagtggtgatagtgagtggattgttggt 5615365

                                                                           
Query: 484     gcttctgcaagcaaaggagagcacaggttgcacatatgggaccgagcagggcgtcttata 543
               ||||| |||||||||||||||||||| |||  ||||||| ||||| |||| |||||| ||
Sbjct: 5615364 gcttcagcaagcaaaggagagcacagattgtgcatatggaaccgatcaggacgtcttgta 5615305

                 
Query: 544     aa 545
               ||
Sbjct: 5615304 aa 5615303

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>gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0014O06, complete sequence
          Length = 168031

 Score =  325 bits (164), Expect = 9e-86
 Identities = 254/284 (89%)
 Strand = Plus / Minus

                                                                         
Query: 45    taaattttcggatggttctcctccttttacaccaactgctgcaacgtttgataagcatgg 104
             ||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||| ||||
Sbjct: 80286 taaattttctgatggttctccaccttttacaccaactgctgcaacatttgacaagtatgg 80227

                                                                         
Query: 105   agatctgatatatgtgggcaattccaagggagagatattaattgtagattcgaaaggcat 164
              |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 80226 ggatctgatatatgtgggcaattccaagggagagatattaattatagattcaaaaagcat 80167

                                                                         
Query: 165   ccaagtacttggggtaattcccatcccaggtggaacagttgttaaggacattgttttcag 224
             | | |||| ||  || ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 80166 caaggtacatgctgtgattcccatcccaggtggaacagtagttaaggatattgttttcag 80107

                                                                         
Query: 225   cagagatggccaatatctgctaacgaactctaatgatcgtgtcattagagtctatgagaa 284
             ||| ||||||| |||||| || || |||||||||||||| || |||||||||||||| ||
Sbjct: 80106 cagggatggccgatatctactcacaaactctaatgatcgggtgattagagtctatgataa 80047

                                                         
Query: 285   tattctgcctattaaaggttctgggaaggagattgaaaaaataa 328
             | |||||||| |||||||||||||  ||||||| ||||||||||
Sbjct: 80046 tcttctgcctgttaaaggttctggagaggagatagaaaaaataa 80003



 Score =  163 bits (82), Expect = 7e-37
 Identities = 157/182 (86%)
 Strand = Plus / Minus

                                                                         
Query: 364   gagaagctgaaagcaaatggtgcacgctgcctagttttttcttgtgaagtctcagatgcc 423
             |||||||| ||||||||||||||| ||||||||| | ||||||||||| | |  ||||| 
Sbjct: 79970 gagaagctaaaagcaaatggtgcaagctgcctagctatttcttgtgaacttttggatgct 79911

                                                                         
Query: 424   attgcaaaggtacagtggaaggcaccatgcttcagtggcgatgctgagtggatcgttggt 483
             || |||||| ||| |||||||||||||||||| ||||| |||  ||||||||| ||||||
Sbjct: 79910 atcgcaaagataccgtggaaggcaccatgctttagtggtgatagtgagtggattgttggt 79851

                                                                         
Query: 484   gcttctgcaagcaaaggagagcacaggttgcacatatgggaccgagcagggcgtcttata 543
             ||||| |||||||||||||||||||| |||  ||||||| ||||| |||| |||||| ||
Sbjct: 79850 gcttcagcaagcaaaggagagcacagattgtgcatatggaaccgatcaggacgtcttgta 79791

               
Query: 544   aa 545
             ||
Sbjct: 79790 aa 79789

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>dbj|AK111888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074E21, full
           insert sequence
          Length = 1644

 Score =  325 bits (164), Expect = 9e-86
 Identities = 254/284 (89%)
 Strand = Plus / Plus

                                                                       
Query: 45  taaattttcggatggttctcctccttttacaccaactgctgcaacgtttgataagcatgg 104
           ||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||| ||||
Sbjct: 698 taaattttctgatggttctccaccttttacaccaactgctgcaacatttgacaagtatgg 757

                                                                       
Query: 105 agatctgatatatgtgggcaattccaagggagagatattaattgtagattcgaaaggcat 164
            |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 758 ggatctgatatatgtgggcaattccaagggagagatattaattatagattcaaaaagcat 817

                                                                       
Query: 165 ccaagtacttggggtaattcccatcccaggtggaacagttgttaaggacattgttttcag 224
           | | |||| ||  || ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 818 caaggtacatgctgtgattcccatcccaggtggaacagtagttaaggatattgttttcag 877

                                                                       
Query: 225 cagagatggccaatatctgctaacgaactctaatgatcgtgtcattagagtctatgagaa 284
           ||| ||||||| |||||| || || |||||||||||||| || |||||||||||||| ||
Sbjct: 878 cagggatggccgatatctactcacaaactctaatgatcgggtgattagagtctatgataa 937

                                                       
Query: 285 tattctgcctattaaaggttctgggaaggagattgaaaaaataa 328
           | |||||||| |||||||||||||  ||||||| ||||||||||
Sbjct: 938 tcttctgcctgttaaaggttctggagaggagatagaaaaaataa 981



 Score =  163 bits (82), Expect = 7e-37
 Identities = 157/182 (86%)
 Strand = Plus / Plus

                                                                        
Query: 364  gagaagctgaaagcaaatggtgcacgctgcctagttttttcttgtgaagtctcagatgcc 423
            |||||||| ||||||||||||||| ||||||||| | ||||||||||| | |  ||||| 
Sbjct: 1014 gagaagctaaaagcaaatggtgcaagctgcctagctatttcttgtgaacttttggatgct 1073

                                                                        
Query: 424  attgcaaaggtacagtggaaggcaccatgcttcagtggcgatgctgagtggatcgttggt 483
            || |||||| ||| |||||||||||||||||| ||||| |||  ||||||||| ||||||
Sbjct: 1074 atcgcaaagataccgtggaaggcaccatgctttagtggtgatagtgagtggattgttggt 1133

                                                                        
Query: 484  gcttctgcaagcaaaggagagcacaggttgcacatatgggaccgagcagggcgtcttata 543
            ||||| |||||||||||||||||||| |||  ||||||| ||||| |||| |||||| ||
Sbjct: 1134 gcttcagcaagcaaaggagagcacagattgtgcatatggaaccgatcaggacgtcttgta 1193

              
Query: 544  aa 545
            ||
Sbjct: 1194 aa 1195

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>dbj|AK111713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020E17, full
            insert sequence
          Length = 2196

 Score =  325 bits (164), Expect = 9e-86
 Identities = 254/284 (89%)
 Strand = Plus / Plus

                                                                        
Query: 45   taaattttcggatggttctcctccttttacaccaactgctgcaacgtttgataagcatgg 104
            ||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||| ||||
Sbjct: 816  taaattttctgatggttctccaccttttacaccaactgctgcaacatttgacaagtatgg 875

                                                                        
Query: 105  agatctgatatatgtgggcaattccaagggagagatattaattgtagattcgaaaggcat 164
             |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 876  ggatctgatatatgtgggcaattccaagggagagatattaattatagattcaaaaagcat 935

                                                                        
Query: 165  ccaagtacttggggtaattcccatcccaggtggaacagttgttaaggacattgttttcag 224
            | | |||| ||  || ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 936  caaggtacatgctgtgattcccatcccaggtggaacagtagttaaggatattgttttcag 995

                                                                        
Query: 225  cagagatggccaatatctgctaacgaactctaatgatcgtgtcattagagtctatgagaa 284
            ||| ||||||| |||||| || || |||||||||||||| || |||||||||||||| ||
Sbjct: 996  cagggatggccgatatctactcacaaactctaatgatcgggtgattagagtctatgataa 1055

                                                        
Query: 285  tattctgcctattaaaggttctgggaaggagattgaaaaaataa 328
            | |||||||| |||||||||||||  ||||||| ||||||||||
Sbjct: 1056 tcttctgcctgttaaaggttctggagaggagatagaaaaaataa 1099



 Score =  155 bits (78), Expect = 2e-34
 Identities = 156/182 (85%)
 Strand = Plus / Plus

                                                                        
Query: 364  gagaagctgaaagcaaatggtgcacgctgcctagttttttcttgtgaagtctcagatgcc 423
            |||||||| ||||||||||||||| ||||||||| | ||||||||||| | |  ||||| 
Sbjct: 1132 gagaagctaaaagcaaatggtgcaagctgcctagctatttcttgtgaacttttggatgct 1191

                                                                        
Query: 424  attgcaaaggtacagtggaaggcaccatgcttcagtggcgatgctgagtggatcgttggt 483
            || || ||| ||| |||||||||||||||||| ||||| |||  ||||||||| ||||||
Sbjct: 1192 atcgcgaagataccgtggaaggcaccatgctttagtggtgatagtgagtggattgttggt 1251

                                                                        
Query: 484  gcttctgcaagcaaaggagagcacaggttgcacatatgggaccgagcagggcgtcttata 543
            ||||| |||||||||||||||||||| |||  ||||||| ||||| |||| |||||| ||
Sbjct: 1252 gcttcagcaagcaaaggagagcacagattgtgcatatggaaccgatcaggacgtcttgta 1311

              
Query: 544  aa 545
            ||
Sbjct: 1312 aa 1313

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>gb|AC144476.11| Medicago truncatula clone mth2-10a6, complete sequence
          Length = 119355

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                         
Query: 430   aaggtacagtggaaggcaccatgcttcagtggcgatgctgagtggatcgttggtgcttct 489
             ||||| || ||||||||||| || |||||||| |||| ||||||| | ||||||| ||||
Sbjct: 60836 aaggtgcactggaaggcaccctgtttcagtggtgatggtgagtgggttgttggtggttct 60895

                                
Query: 490   gcaagcaaaggagagcaca 508
             || || |||||||||||||
Sbjct: 60896 gctagtaaaggagagcaca 60914

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>gb|AC147431.19| Medicago truncatula clone mth2-88g17, complete sequence
          Length = 145905

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                         
Query: 430   aaggtacagtggaaggcaccatgcttcagtggcgatgctgagtggatcgttggtgcttct 489
             ||||| || ||||||||||| || |||||||| |||| ||||||| | ||||||| ||||
Sbjct: 40714 aaggtgcactggaaggcaccctgtttcagtggtgatggtgagtgggttgttggtggttct 40773

                                
Query: 490   gcaagcaaaggagagcaca 508
             || || |||||||||||||
Sbjct: 40774 gctagtaaaggagagcaca 40792

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>gb|AY463022.1| Musa acuminata transducin/WD-40 repeat family-like protein mRNA,
           partial cds
          Length = 365

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                       
Query: 428 caaaggtacagtggaaggcaccatgcttcagtggcgatgctgagtggatcgttggtgctt 487
           ||||| |||| ||||| ||||| || || ||||| |||| ||| ||| || | |||||||
Sbjct: 18  caaagatacaatggaaagcaccttgttttagtggtgatggtgaatgggtcataggtgctt 77

                                
Query: 488 ctgcaagcaaaggagagcaca 508
           |||| |||||||| |||||||
Sbjct: 78  ctgctagcaaaggggagcaca 98

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>gb|AC099337.2| Homo sapiens chromosome 1 clone RP11-365M20, complete sequence
          Length = 179350

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 307    gggaaggagattgaaaaaataat 329
              |||||||||||||||||||||||
Sbjct: 150918 gggaaggagattgaaaaaataat 150940

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>gb|AC009758.8| Homo sapiens chromosome 11, clone RP11-101E4, complete sequence
          Length = 141485

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 208   aaggacattgttttcagcagaga 230
             |||||||||||||||||||||||
Sbjct: 19209 aaggacattgttttcagcagaga 19231



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   gacattgttttcagcagaga 230
             ||||||||||||||||||||
Sbjct: 33667 gacattgttttcagcagaga 33686

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>gb|AC010930.9| Homo sapiens chromosome 11, clone RP11-54I6, complete sequence
          Length = 148313

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 208   aaggacattgttttcagcagaga 230
             |||||||||||||||||||||||
Sbjct: 46161 aaggacattgttttcagcagaga 46139



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   gacattgttttcagcagaga 230
             ||||||||||||||||||||
Sbjct: 31696 gacattgttttcagcagaga 31677

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>gb|AC022368.2|AC022368 Mus musculus strain C57BL6/J clone RP23-192D21, complete sequence
          Length = 207757

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 362  atgagaagctgaaagcaaatgg 383
            ||||||||||||||||||||||
Sbjct: 8748 atgagaagctgaaagcaaatgg 8727

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>gb|AC102452.7| Mus musculus chromosome 5, clone RP24-272L20, complete sequence
          Length = 183858

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 362   atgagaagctgaaagcaaatgg 383
             ||||||||||||||||||||||
Sbjct: 90121 atgagaagctgaaagcaaatgg 90142

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>ref|XM_413962.1| PREDICTED: Gallus gallus similar to KIAA0856 protein (LOC415594),
           partial mRNA
          Length = 3226

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 3   ttctgcatctgacaatggtaa 23
           |||||||||||||||||||||
Sbjct: 322 ttctgcatctgacaatggtaa 342

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>gb|AC105600.5| Rattus norvegicus 4 BAC CH230-209E1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 218874

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 212   acattgttttcagcagagatg 232
             |||||||||||||||||||||
Sbjct: 98442 acattgttttcagcagagatg 98422

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>gb|AC099673.2| Homo sapiens chromosome 1 clone RP11-109H10, complete sequence
          Length = 193749

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 417   agatgccattgcaaaggtaca 437
             |||||||||||||||||||||
Sbjct: 63775 agatgccattgcaaaggtaca 63795

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>gb|DQ015913.1| Caprine arthritis-encephalitis virus isolate G806 surface envelope
           glycoprotein (env) gene, partial cds
          Length = 1653

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 172 cttggggtaattcccatcccaggtg 196
           |||||| ||||||||||||||||||
Sbjct: 952 cttgggataattcccatcccaggtg 928

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>gb|AC109201.12| Mus musculus chromosome 15, clone RP23-18P10, complete sequence
          Length = 213493

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   cctattaaaggttctgggaa 311
             ||||||||||||||||||||
Sbjct: 66880 cctattaaaggttctgggaa 66899

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>gb|AF528565.1| Zea mays cultivar BSSS53 chromosome 4 clone BAC 072, complete sequence
          Length = 106246

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   aataatcaccagcaacaata 343
             ||||||||||||||||||||
Sbjct: 92618 aataatcaccagcaacaata 92599

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>gb|AC165072.13| Mus musculus chromosome 18, clone RP23-345E17, complete sequence
          Length = 223019

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 190    ccaggtggaacagttgttaaggac 213
              |||||||| |||||||||||||||
Sbjct: 210979 ccaggtgggacagttgttaaggac 210956

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>gb|AC140267.2| Mus musculus BAC clone RP24-303O5 from chromosome 15, complete sequence
          Length = 169842

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   aaggagattgaaaaaataat 329
             ||||||||||||||||||||
Sbjct: 96035 aaggagattgaaaaaataat 96016

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>gb|AC161199.4| Mus musculus chromosome 15, clone RP23-383D13, complete sequence
          Length = 218523

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    aaggagattgaaaaaataat 329
              ||||||||||||||||||||
Sbjct: 196738 aaggagattgaaaaaataat 196757

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>gb|AC091396.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-298M8, complete
              sequence
          Length = 237142

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    acattgttttcagcagagat 231
              ||||||||||||||||||||
Sbjct: 211069 acattgttttcagcagagat 211050

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>emb|CT030314.1| Xenopus tropicalis finished cDNA, clone TEgg078n06
          Length = 3739

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 219  tttcagcagagatggccaat 238
            ||||||||||||||||||||
Sbjct: 1732 tttcagcagagatggccaat 1713

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>gb|AC009468.3| Homo sapiens BAC clone GS1-278J22 from 7, complete sequence
          Length = 152517

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 483   tgcttctgcaagcaaaggagagca 506
             ||||||||||||| ||||||||||
Sbjct: 30978 tgcttctgcaagccaaggagagca 31001

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>gb|AY843756.1| Scinax catharinae 12S ribosomal RNA gene, partial sequence; tRNA-Val
            gene, complete sequence; and 16S ribosomal RNA gene,
            partial sequence; mitochondrial
          Length = 2407

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 310  aaggagattgaaaaaataat 329
            ||||||||||||||||||||
Sbjct: 1073 aaggagattgaaaaaataat 1092

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>gb|AC142323.1| Pan troglodytes BAC clone RP43-72N8 from 7, complete sequence
          Length = 190220

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 483   tgcttctgcaagcaaaggagagca 506
             ||||||||||||| ||||||||||
Sbjct: 54097 tgcttctgcaagccaaggagagca 54120

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>emb|BX322532.2| Human DNA sequence from clone RP11-543A11 on chromosome 1 Contains the
             5' end of the gene for a novel protein (FLJ16613) and the
             5' end of one variant of the OPN3 gene for opsin 3
             (encephalopsin, panopsin), complete sequence
          Length = 40220

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 230   atggccaatatctgctaacgaactctaatgat 261
             ||||||||||| |||| | |||||||||||||
Sbjct: 28326 atggccaatatttgctgaggaactctaatgat 28295

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>emb|AL365501.11| Human DNA sequence from clone RP13-27G4 on chromosome 10 Contains two
             novel genes (LOC119151) (FLJ40086) (LOC338616), complete
             sequence
          Length = 72889

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   tgggaaggagattgaaaaaa 325
             ||||||||||||||||||||
Sbjct: 51974 tgggaaggagattgaaaaaa 51955

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>emb|AL355858.14| Human DNA sequence from clone RP11-30A6 on chromosome 10, complete
              sequence
          Length = 191575

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    aaggagattgaaaaaataat 329
              ||||||||||||||||||||
Sbjct: 158896 aaggagattgaaaaaataat 158915

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>gb|AC087354.13| Homo sapiens chromosome 8, clone RP11-398H6, complete sequence
          Length = 184610

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    aatggtaatgtccctgcacc 35
             ||||||||||||||||||||
Sbjct: 34796 aatggtaatgtccctgcacc 34777

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>emb|AL137857.29| Human DNA sequence from clone RP5-1166H10 on chromosome 1p33-35.1
              Contains the MATN1 gene for matrilin 1 cartilage matrix
              protein, a novel gene (FLJ46197, FLJ33163), the 3' end of
              the gene for Lysosomal-associated multispanning membrane
              protein-5 (LAPTM5) and a CpG island, complete sequence
          Length = 152042

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 483    tgcttctgcaagcaaaggag 502
              ||||||||||||||||||||
Sbjct: 141369 tgcttctgcaagcaaaggag 141350

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>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    agagatattaattgtagatt 154
              ||||||||||||||||||||
Sbjct: 810858 agagatattaattgtagatt 810839

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>gb|BC017506.1|BC017506 Homo sapiens, clone IMAGE:4901582, mRNA, partial cds
          Length = 1763

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 483 tgcttctgcaagcaaaggag 502
           ||||||||||||||||||||
Sbjct: 480 tgcttctgcaagcaaaggag 461

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>gb|AC053480.5|AC053480 Homo sapiens chromosome 8, clone RP11-526P7, complete sequence
          Length = 158267

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     aatggtaatgtccctgcacc 35
              ||||||||||||||||||||
Sbjct: 139858 aatggtaatgtccctgcacc 139839

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>gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109999

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 189   cccaggtggaacagttgttaagga 212
             ||||||||||| ||||||||||||
Sbjct: 36354 cccaggtggaagagttgttaagga 36331

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>ref|NM_002379.2| Homo sapiens matrilin 1, cartilage matrix protein (MATN1), mRNA
          Length = 2414

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 483 tgcttctgcaagcaaaggag 502
           ||||||||||||||||||||
Sbjct: 227 tgcttctgcaagcaaaggag 246

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>emb|AL451051.6| Human DNA sequence from clone RP11-293L15 on chromosome 1 Contains the
             5' end of a novel gene and a CpG island, complete sequence
          Length = 76771

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   ttcttgtgaagtctcagatg 421
             ||||||||||||||||||||
Sbjct: 36445 ttcttgtgaagtctcagatg 36426

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>dbj|AP003382.3| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2011J21, complete
              sequence
          Length = 113284

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    gaaggagattgaaaaaataa 328
              ||||||||||||||||||||
Sbjct: 105222 gaaggagattgaaaaaataa 105203

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>dbj|AP000817.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-21K9, complete
             sequence
          Length = 90461

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   gaaggagattgaaaaaataa 328
             ||||||||||||||||||||
Sbjct: 18723 gaaggagattgaaaaaataa 18704

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>gb|AC005799.1|AC005799 Homo sapiens chromosome 17, clone hRPK.62_F_10, complete sequence
          Length = 154902

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 201    agttgttaaggacattgttttcag 224
              |||||||||||||||| |||||||
Sbjct: 121266 agttgttaaggacattattttcag 121289

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>emb|AL929144.10| Mouse DNA sequence from clone RP23-441D24 on chromosome 2, complete
             sequence
          Length = 82369

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   gagattgaaaaaataatcac 332
             ||||||||||||||||||||
Sbjct: 26024 gagattgaaaaaataatcac 26005

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>gb|M55675.1|HUMCMP1 Human cartilage matrix protein (CMP) gene, exon 1
          Length = 809

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 483 tgcttctgcaagcaaaggag 502
           ||||||||||||||||||||
Sbjct: 227 tgcttctgcaagcaaaggag 246


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,325,570
Number of Sequences: 3902068
Number of extensions: 5325570
Number of successful extensions: 93417
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93277
Number of HSP's gapped (non-prelim): 140
length of query: 549
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 526
effective length of database: 17,143,297,704
effective search space: 9017374592304
effective search space used: 9017374592304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result