>FA5_PIG (Q9GLP1) Coagulation factor V precursor (Activated protein C|
           cofactor) [Contains: Coagulation factor V heavy chain;
           Coagulation factor V light chain]
          Length = 2258

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 298 PASERAY-WSKPVRENS*ATHHSFPCLGHIRYSYWHL-QAVNGHLVG 432
           P  E  Y W+  + E+S  TH+  PCL HI YSY +L Q  N  L+G
Sbjct: 144 PGQEYTYEWN--ISEDSGPTHNDPPCLTHIYYSYENLIQDFNSGLIG 188

>NTCP2_CRIGR (Q60414) Ileal sodium/bile acid cotransporter (Ileal Na(+)/bile|
           acid cotransporter) (Na(+)-dependent ileal bile acid
           transporter) (Ileal sodium-dependent bile acid
           transporter) (ISBT) (IBAT) (Apical sodium-dependent bile
           acid transporter) (AS
          Length = 348

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 515 LRNPWTVGVGFLAQYLIKPMLGYAIAL 595
           LR PW + VGFL Q+ I P+ G+ +++
Sbjct: 62  LRRPWGIVVGFLCQFGIMPLTGFVLSV 88

>APOB_HUMAN (P04114) Apolipoprotein B-100 precursor (Apo B-100) [Contains:|
            Apolipoprotein B-48 (Apo B-48)]
          Length = 4563

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 346  NYFLVLACSSRPARWQVTRNVS-FCLAENLTAPDNRNKSGRRCGRNGQSPLGLLRGSTSI 170
            NY L L+ S++ A WQV+   + +   +N +A +N N      G NG++ L  L    +I
Sbjct: 3073 NYALFLSPSAQQASWQVSARFNQYKYNQNFSAGNNENIMEAHVGINGEANLDFLNIPLTI 3132

Query: 169  CRHRAP 152
               R P
Sbjct: 3133 PEMRLP 3138

>NTCP2_RABIT (Q28727) Ileal sodium/bile acid cotransporter (Ileal Na(+)/bile|
           acid cotransporter) (Na(+) dependent ileal bile acid
           transporter) (Ileal sodium-dependent bile acid
           transporter) (ISBT) (IBAT) (Apical sodium dependent bile
           acid transporter) (AS
          Length = 347

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 515 LRNPWTVGVGFLAQYLIKPMLGYAIAL 595
           +R PW + +GFL Q+ I P+ G+ +A+
Sbjct: 63  IRRPWGIFIGFLCQFGIMPLTGFVLAV 89

>FA5_BOVIN (Q28107) Coagulation factor V precursor (Activated protein C|
           cofactor) [Contains: Coagulation factor V heavy chain;
           Coagulation factor V light chain]
          Length = 2211

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 298 PASERAY-WSKPVRENS*ATHHSFPCLGHIRYSYWHL-QAVNGHLVG 432
           P  E  Y W   + E+S  TH   PCL HI YSY +L +  N  L+G
Sbjct: 144 PGQEYTYEWI--ISEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIG 188

>FA5_HUMAN (P12259) Coagulation factor V precursor (Activated protein C|
           cofactor) [Contains: Coagulation factor V heavy chain;
           Coagulation factor V light chain]
          Length = 2224

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 298 PASERAY-WSKPVRENS*ATHHSFPCLGHIRYSYWHL-QAVNGHLVG 432
           P  E  Y WS  + E+S  TH   PCL HI YS+ +L +  N  L+G
Sbjct: 144 PGREYTYEWS--ISEDSGPTHDDPPCLTHIYYSHENLIEDFNSGLIG 188

>NTCP2_RAT (Q62633) Ileal sodium/bile acid cotransporter (Ileal Na(+)/bile|
           acid cotransporter) (Na(+)-dependent ileal bile acid
           transporter) (Ileal sodium-dependent bile acid
           transporter) (ISBT) (IBAT) (Apical sodium-dependent bile
           acid transporter) (ASBT
          Length = 348

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 515 LRNPWTVGVGFLAQYLIKPMLGYAIAL 595
           ++ PW + VGFL Q+ I P+ G+ +++
Sbjct: 62  IKRPWGIFVGFLCQFGIMPLTGFILSV 88

>NTCP2_MOUSE (P70172) Ileal sodium/bile acid cotransporter (Ileal Na(+)/bile|
           acid cotransporter) (Na(+)-dependent ileal bile acid
           transporter) (Ileal sodium-dependent bile acid
           transporter) (ISBT) (IBAT) (Apical sodium-dependent bile
           acid transporter) (AS
          Length = 348

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 515 LRNPWTVGVGFLAQYLIKPMLGYAIAL 595
           ++ PW + VGFL Q+ I P+ G+ +++
Sbjct: 62  IKRPWGIFVGFLCQFGIMPLTGFILSV 88

>NTCP2_HUMAN (Q12908) Ileal sodium/bile acid cotransporter (Ileal Na(+)/bile|
           acid cotransporter) (Na(+)-dependent ileal bile acid
           transporter) (Ileal sodium-dependent bile acid
           transporter) (ISBT) (IBAT) (Apical sodium-dependent bile
           acid transporter) (AS
          Length = 348

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 515 LRNPWTVGVGFLAQYLIKPMLGYAIAL 595
           ++ PW + VGFL Q+ I P+ G+ +++
Sbjct: 62  IKRPWGICVGFLCQFGIMPLTGFILSV 88

>MATK_CICAR (Q5YK05) Maturase K (Intron maturase)|
          Length = 509

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = -2

Query: 531 VHGFLKHLLKSSNVNVSPIDSIRNPRPRVKRSVSNQVTIDGL*MPITVPNMTQTGKRVVS 352
           V   +  + + +++ +S  DS +NP     ++ ++Q+  +G  + + +P   Q+G  +  
Sbjct: 57  VKRLISRMYQQNHLIISANDSNKNPFWGYNKNFNSQIISEGFAIVVEIPFFLQSGSSLKE 116

Query: 351 SSTIFSY 331
           S  I SY
Sbjct: 117 SEIIKSY 123

>K1543_HUMAN (Q9P1Y5) Protein KIAA1543|
          Length = 1249

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
 Frame = +3

Query: 12  LRXSTRYLCQAWRLPRPALSTPWHPSP--ALSARGRASPLL----VSDAD*ELGALCRHM 173
           L  S    C+AWR   P L TP +PS   AL AR    P L    V +AD       RH 
Sbjct: 77  LLLSAELYCRAWRQALPQLETPPNPSALLALLARRGTVPALPERPVREAD------LRHQ 130

Query: 174 EVL 182
            +L
Sbjct: 131 PIL 133

>MCP_HUMAN (P15529) Membrane cofactor protein precursor (Trophoblast leukocyte|
           common antigen) (TLX) (CD46 antigen)
          Length = 392

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 543 PTPTVHGFLKHLLKSSNVNVSPIDSIRNPRPRVKRSVSN 427
           P+ T    L H + +S+   SP  S   PRP  K  VSN
Sbjct: 289 PSSTKPPALSHSVSTSSTTKSPASSASGPRPTYKPPVSN 327


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,873,489
Number of Sequences: 219361
Number of extensions: 1734716
Number of successful extensions: 4940
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4935
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)