ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8o18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_192312.1| Oryza sativa (japonica cultivar-group), predic... 414 e-112
2dbj|AK069337.1| Oryza sativa (japonica cultivar-group) cDNA clon... 414 e-112
3dbj|AK104932.1| Oryza sativa (japonica cultivar-group) cDNA clon... 406 e-110
4gb|AY581831.1| Cynodon dactylon unknown mRNA 262 1e-66
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
6dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
7ref|NM_179758.2| Arabidopsis thaliana bile acid:sodium symporter... 88 4e-14
8gb|BT003925.1| Arabidopsis thaliana clone RAFL15-23-I10 (R20694)... 88 4e-14
9gb|AY568720.1| Lycopersicon esculentum putative anion:sodium sym... 84 6e-13
10gb|AF498303.1| Arabidopsis thaliana putative sodium-dependent bi... 80 9e-12
11dbj|AK111326.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
12gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 ma... 54 5e-04
13gb|AC151766.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 8.1
14ref|XM_476894.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.1
15gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 8.1
16gb|AC084310.16| Mus musculus chromosome 1, clone RP23-10C10, com... 40 8.1
17ref|XM_742231.1| Aspergillus fumigatus Af293 hypothetical protei... 40 8.1
18ref|XM_569705.1| Cryptococcus neoformans var. neoformans JEC21 s... 40 8.1
19gb|AF426384.1| Danio rerio deltaD protein gene, complete cds 40 8.1
20emb|AL591042.5| Human DNA sequence from clone RP11-480L11 on chr... 40 8.1
21emb|AL606508.12| Mouse DNA sequence from clone RP23-180B9 on chr... 40 8.1
22dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
23dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
24dbj|AK106871.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.1
25gb|AF100933.1|AF100933 Oncorhynchus mykiss carbonyl reductase/20... 40 8.1
26gb|AF100932.1|AF100932 Oncorhynchus mykiss carbonyl reductase/20... 40 8.1
27gb|AF100931.1|AF100931 Oncorhynchus mykiss carbonyl reductase/20... 40 8.1
28gb|AF100930.1|AF100930 Oncorhynchus mykiss carbonyl reductase/20... 40 8.1
29dbj|AP006638.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 8.1
30gb|U19741.1|UPU19741 Urochloa panicoides carbonic anhydrase 1 mR... 40 8.1
31emb|AL672076.10| Mouse DNA sequence from clone RP23-161N17 on ch... 40 8.1

>ref|NM_192312.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1227

 Score =  414 bits (209), Expect = e-112
 Identities = 344/389 (88%)
 Strand = Plus / Plus

                                                                       
Query: 200 tggggattggccattgcgcccgcaccgtcgaccactcttgttccggttgtcaggagccgt 259
           ||||||||| |||||||| |||||||| ||||||||  || ||||| | | || ||| ||
Sbjct: 142 tggggattgaccattgcgtccgcaccggcgaccactgctgctccggctctgagaagctgt 201

                                                                       
Query: 260 caaattttctgcaaggcagaagctaacatttctagtaacctgccagcgagcgggcctact 319
           ||| | || |||||||| ||||||||||| || ||||| ||||||| ||||   |||| |
Sbjct: 202 caactattgtgcaaggctgaagctaacatatccagtaatctgccagagagcattcctagt 261

                                                                       
Query: 320 ggagcaagccagtacgagaaaatagttgagctactcaccactcttttccctgtctgggtc 379
           | ||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 262 gaagcaaaccagtacgagaaaatagttgagctgcttaccactcttttccctgtctgggtc 321

                                                                       
Query: 380 atattaggtacagttattggcatctacaagccgtcaatggtcacctggttggagactgat 439
           |||||||||||  ||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 322 atattaggtaccattattggcatctacaagccatcgatggttacctggttggagactgat 381

                                                                       
Query: 440 ctttttactctgggcctaggattcctaatgctgtcaatgggactaacattgacatttgaa 499
           ||||| ||| |||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct: 382 cttttcactgtgggcctaggattcctaatgctatcaatgggactaacattgaccttcgaa 441

                                                                       
Query: 500 gatttcaggagatgtttaaggaatccatggacagttggtgtgggatttcttgcgcaatat 559
           ||||||||||||||  | |||||||||||||| || |||||||||||||||||||| |||
Sbjct: 442 gatttcaggagatgcatgaggaatccatggactgtgggtgtgggatttcttgcgcagtat 501

                                        
Query: 560 ttgatcaaacctatgctaggatatgctat 588
           ||||||||||||||||| |||| ||||||
Sbjct: 502 ttgatcaaacctatgctgggatttgctat 530



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 77  atggcatccgtctcccgcgctctccgcccgcggccgc 113
           ||||| ||||||||||| || ||||||||||||||||
Sbjct: 1   atggcgtccgtctcccgagccctccgcccgcggccgc 37



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>dbj|AK069337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014F07, full
           insert sequence
          Length = 1887

 Score =  414 bits (209), Expect = e-112
 Identities = 344/389 (88%)
 Strand = Plus / Plus

                                                                       
Query: 200 tggggattggccattgcgcccgcaccgtcgaccactcttgttccggttgtcaggagccgt 259
           ||||||||| |||||||| |||||||| ||||||||  || ||||| | | || ||| ||
Sbjct: 473 tggggattgaccattgcgtccgcaccggcgaccactgctgctccggctctgagaagctgt 532

                                                                       
Query: 260 caaattttctgcaaggcagaagctaacatttctagtaacctgccagcgagcgggcctact 319
           ||| | || |||||||| ||||||||||| || ||||| ||||||| ||||   |||| |
Sbjct: 533 caactattgtgcaaggctgaagctaacatatccagtaatctgccagagagcattcctagt 592

                                                                       
Query: 320 ggagcaagccagtacgagaaaatagttgagctactcaccactcttttccctgtctgggtc 379
           | ||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 593 gaagcaaaccagtacgagaaaatagttgagctgcttaccactcttttccctgtctgggtc 652

                                                                       
Query: 380 atattaggtacagttattggcatctacaagccgtcaatggtcacctggttggagactgat 439
           |||||||||||  ||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 653 atattaggtaccattattggcatctacaagccatcgatggttacctggttggagactgat 712

                                                                       
Query: 440 ctttttactctgggcctaggattcctaatgctgtcaatgggactaacattgacatttgaa 499
           ||||| ||| |||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct: 713 cttttcactgtgggcctaggattcctaatgctatcaatgggactaacattgaccttcgaa 772

                                                                       
Query: 500 gatttcaggagatgtttaaggaatccatggacagttggtgtgggatttcttgcgcaatat 559
           ||||||||||||||  | |||||||||||||| || |||||||||||||||||||| |||
Sbjct: 773 gatttcaggagatgcatgaggaatccatggactgtgggtgtgggatttcttgcgcagtat 832

                                        
Query: 560 ttgatcaaacctatgctaggatatgctat 588
           ||||||||||||||||| |||| ||||||
Sbjct: 833 ttgatcaaacctatgctgggatttgctat 861



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 73  ctccatggcatccgtctcccgcgctctccgcccgcggccgc 113
           ||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 328 ctccatggcgtccgtctcccgagccctccgcccgcggccgc 368



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>dbj|AK104932.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-B10, full
           insert sequence
          Length = 1616

 Score =  406 bits (205), Expect = e-110
 Identities = 343/389 (88%)
 Strand = Plus / Plus

                                                                       
Query: 200 tggggattggccattgcgcccgcaccgtcgaccactcttgttccggttgtcaggagccgt 259
           ||||||||| |||||||| |||||||| ||||||||  || ||||| | | || ||| ||
Sbjct: 229 tggggattgaccattgcgtccgcaccggcgaccactgctgctccggctctgagaagctgt 288

                                                                       
Query: 260 caaattttctgcaaggcagaagctaacatttctagtaacctgccagcgagcgggcctact 319
           ||| | || |||||||| ||||||| ||| || ||||| ||||||| ||||   |||| |
Sbjct: 289 caactattgtgcaaggctgaagctagcatatccagtaatctgccagagagcattcctagt 348

                                                                       
Query: 320 ggagcaagccagtacgagaaaatagttgagctactcaccactcttttccctgtctgggtc 379
           | ||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 349 gaagcaaaccagtacgagaaaatagttgagctgcttaccactcttttccctgtctgggtc 408

                                                                       
Query: 380 atattaggtacagttattggcatctacaagccgtcaatggtcacctggttggagactgat 439
           |||||||||||  ||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 409 atattaggtaccattattggcatctacaagccatcgatggttacctggttggagactgat 468

                                                                       
Query: 440 ctttttactctgggcctaggattcctaatgctgtcaatgggactaacattgacatttgaa 499
           ||||| ||| |||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct: 469 cttttcactgtgggcctaggattcctaatgctatcaatgggactaacattgaccttcgaa 528

                                                                       
Query: 500 gatttcaggagatgtttaaggaatccatggacagttggtgtgggatttcttgcgcaatat 559
           ||||||||||||||  | |||||||||||||| || |||||||||||||||||||| |||
Sbjct: 529 gatttcaggagatgcatgaggaatccatggactgtgggtgtgggatttcttgcgcagtat 588

                                        
Query: 560 ttgatcaaacctatgctaggatatgctat 588
           ||||||||||||||||| |||| ||||||
Sbjct: 589 ttgatcaaacctatgctgggatttgctat 617



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 73  ctccatggcatccgtctcccgcgctctccgcccgcggccgc 113
           ||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 84  ctccatggcgtccgtctcccgagccctccgcccgcggccgc 124



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>gb|AY581831.1| Cynodon dactylon unknown mRNA
          Length = 660

 Score =  262 bits (132), Expect = 1e-66
 Identities = 231/264 (87%)
 Strand = Plus / Plus

                                                                       
Query: 325 aagccagtacgagaaaatagttgagctactcaccactcttttccctgtctgggtcatatt 384
           ||||||||| |||||| |||||||||| || ||||||||||||||||||||||||||| |
Sbjct: 109 aagccagtatgagaaagtagttgagctgcttaccactcttttccctgtctgggtcatact 168

                                                                       
Query: 385 aggtacagttattggcatctacaagccgtcaatggtcacctggttggagactgatctttt 444
            |||||| ||||||||||||||||||| |||||||| ||||||||||| || || |||||
Sbjct: 169 gggtacaattattggcatctacaagccatcaatggttacctggttggaaaccgacctttt 228

                                                                       
Query: 445 tactctgggcctaggattcctaatgctgtcaatgggactaacattgacatttgaagattt 504
            ||||| ||| |||| ||||||||| |||| ||||||||||| ||||||||||| |||||
Sbjct: 229 cactcttggcttaggcttcctaatgttgtcgatgggactaactttgacatttgatgattt 288

                                                                       
Query: 505 caggagatgtttaaggaatccatggacagttggtgtgggatttcttgcgcaatatttgat 564
            | ||||||||| || |||||||||||||| |||||||||||| | || || ||||||||
Sbjct: 289 taagagatgtttgagaaatccatggacagtgggtgtgggatttgtcgcacagtatttgat 348

                                   
Query: 565 caaacctatgctaggatatgctat 588
           ||||||| || | |||| ||||||
Sbjct: 349 caaacctttgttgggatttgctat 372



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  155 bits (78), Expect = 2e-34
 Identities = 102/110 (92%)
 Strand = Plus / Plus

                                                                            
Query: 422      acctggttggagactgatctttttactctgggcctaggattcctaatgctgtcaatggga 481
                ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct: 25969625 acctggttggagactgatcttttcactgtgggcctaggattcctaatgctatcaatggga 25969684

                                                                  
Query: 482      ctaacattgacatttgaagatttcaggagatgtttaaggaatccatggac 531
                ||||||||||| || |||||||||||||||||  | ||||||||||||||
Sbjct: 25969685 ctaacattgaccttcgaagatttcaggagatgcatgaggaatccatggac 25969734



 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Plus

                                                                            
Query: 269      tgcaaggcagaagctaacatttctagtaacctgccagcgagcgggcctactggagcaagc 328
                |||||||| ||||||||||| || ||||| ||||||| ||||   |||| || ||||| |
Sbjct: 25969254 tgcaaggctgaagctaacatatccagtaatctgccagagagcattcctagtgaagcaaac 25969313

                                                                  
Query: 329      cagtacgagaaaatagttgagctactcaccactcttttccctgtctgggt 378
                ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 25969314 cagtacgagaaaatagttgagctgcttaccactcttttccctgtctgggt 25969363



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Plus

                                                                     
Query: 536      ggtgtgggatttcttgcgcaatatttgatcaaacctatgctaggatatgctat 588
                |||||||||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct: 25969846 ggtgtgggatttcttgcgcagtatttgatcaaacctatgctgggatttgctat 25969898



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                             
Query: 376      ggtcatattaggtacagttattggcatctacaagccgtcaatggt 420
                |||||||||||||||  ||||||||||||||||||| || |||||
Sbjct: 25969485 ggtcatattaggtaccattattggcatctacaagccatcgatggt 25969529



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 73       ctccatggcatccgtctcccgcgctctccgcccgcggccgc 113
                ||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 25967600 ctccatggcgtccgtctcccgagccctccgcccgcggccgc 25967640



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>dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0707D10
          Length = 172003

 Score =  155 bits (78), Expect = 2e-34
 Identities = 102/110 (92%)
 Strand = Plus / Plus

                                                                         
Query: 422   acctggttggagactgatctttttactctgggcctaggattcctaatgctgtcaatggga 481
             ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct: 65692 acctggttggagactgatcttttcactgtgggcctaggattcctaatgctatcaatggga 65751

                                                               
Query: 482   ctaacattgacatttgaagatttcaggagatgtttaaggaatccatggac 531
             ||||||||||| || |||||||||||||||||  | ||||||||||||||
Sbjct: 65752 ctaacattgaccttcgaagatttcaggagatgcatgaggaatccatggac 65801



 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Plus

                                                                         
Query: 269   tgcaaggcagaagctaacatttctagtaacctgccagcgagcgggcctactggagcaagc 328
             |||||||| ||||||||||| || ||||| ||||||| ||||   |||| || ||||| |
Sbjct: 65321 tgcaaggctgaagctaacatatccagtaatctgccagagagcattcctagtgaagcaaac 65380

                                                               
Query: 329   cagtacgagaaaatagttgagctactcaccactcttttccctgtctgggt 378
             ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 65381 cagtacgagaaaatagttgagctgcttaccactcttttccctgtctgggt 65430



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Plus

                                                                  
Query: 536   ggtgtgggatttcttgcgcaatatttgatcaaacctatgctaggatatgctat 588
             |||||||||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct: 65913 ggtgtgggatttcttgcgcagtatttgatcaaacctatgctgggatttgctat 65965



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                          
Query: 376   ggtcatattaggtacagttattggcatctacaagccgtcaatggt 420
             |||||||||||||||  ||||||||||||||||||| || |||||
Sbjct: 65552 ggtcatattaggtaccattattggcatctacaagccatcgatggt 65596



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 73    ctccatggcatccgtctcccgcgctctccgcccgcggccgc 113
             ||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 63667 ctccatggcgtccgtctcccgagccctccgcccgcggccgc 63707



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>ref|NM_179758.2| Arabidopsis thaliana bile acid:sodium symporter/ transporter
           AT2G26900 mRNA, complete cds
          Length = 1504

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 140/172 (81%)
 Strand = Plus / Plus

                                                                       
Query: 396 ttggcatctacaagccgtcaatggtcacctggttggagactgatctttttactctgggcc 455
           ||||||||| |||||| ||  |||| || |||||||| || ||||| |||||||| || |
Sbjct: 418 ttggcatcttcaagccatccttggttacatggttggaaacagatctctttactctaggtc 477

                                                                       
Query: 456 taggattcctaatgctgtcaatgggactaacattgacatttgaagatttcaggagatgtt 515
           | ||||| || ||||| || |||||  | ||  | || |||||||||||||| |||||||
Sbjct: 478 ttggatttcttatgctttccatgggtttgactcttacgtttgaagatttcagaagatgtt 537

                                                               
Query: 516 taaggaatccatggacagttggtgtgggatttcttgcgcaatatttgatcaa 567
           || | ||||||||||| || ||||| || |||||||| |||||| |||||||
Sbjct: 538 tacgtaatccatggacggtgggtgttggttttcttgctcaatatatgatcaa 589



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>gb|BT003925.1| Arabidopsis thaliana clone RAFL15-23-I10 (R20694) putative Na+
           dependent ileal bile acid transporter (At2g26900) mRNA,
           complete cds
          Length = 1409

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 140/172 (81%)
 Strand = Plus / Plus

                                                                       
Query: 396 ttggcatctacaagccgtcaatggtcacctggttggagactgatctttttactctgggcc 455
           ||||||||| |||||| ||  |||| || |||||||| || ||||| |||||||| || |
Sbjct: 308 ttggcatcttcaagccatccttggttacatggttggaaacagatctctttactctaggtc 367

                                                                       
Query: 456 taggattcctaatgctgtcaatgggactaacattgacatttgaagatttcaggagatgtt 515
           | ||||| || ||||| || |||||  | ||  | || |||||||||||||| |||||||
Sbjct: 368 ttggatttcttatgctttccatgggtttgactcttacgtttgaagatttcagaagatgtt 427

                                                               
Query: 516 taaggaatccatggacagttggtgtgggatttcttgcgcaatatttgatcaa 567
           || | ||||||||||| || ||||| || |||||||| |||||| |||||||
Sbjct: 428 tacgtaatccatggacggtgggtgttggttttcttgctcaatatatgatcaa 479



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>gb|AY568720.1| Lycopersicon esculentum putative anion:sodium symporter mRNA,
           complete cds
          Length = 1224

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 156/194 (80%)
 Strand = Plus / Plus

                                                                       
Query: 356 accactcttttccctgtctgggtcatattaggtacagttattggcatctacaagccgtca 415
           ||||| ||||| ||| | ||||| ||||| |||||| | |||||||| || || || || 
Sbjct: 298 accaccctttttcctctatgggttatattgggtacaatcattggcatatataaaccttct 357

                                                                       
Query: 416 atggtcacctggttggagactgatctttttactctgggcctaggattcctaatgctgtca 475
             |||||| |||||||| || ||||| || ||||||||  | ||||| |||||||| |||
Sbjct: 358 gcggtcacttggttggaaacagatctcttcactctgggtttgggatttctaatgctttca 417

                                                                       
Query: 476 atgggactaacattgacatttgaagatttcaggagatgtttaaggaatccatggacagtt 535
           |||||  | ||| | |||||||| || ||| | |||||||||||||| |||||||| || 
Sbjct: 418 atgggtttgacactaacatttgacgacttccgaagatgtttaaggaacccatggactgta 477

                         
Query: 536 ggtgtgggatttct 549
           ||||| ||||||||
Sbjct: 478 ggtgttggatttct 491



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>gb|AF498303.1| Arabidopsis thaliana putative sodium-dependent bile acid symporter
           (Sbf1) mRNA, complete cds
          Length = 1340

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 139/172 (80%)
 Strand = Plus / Plus

                                                                       
Query: 396 ttggcatctacaagccgtcaatggtcacctggttggagactgatctttttactctgggcc 455
           ||||||||| |||||| ||  |||| || |||||||| || ||||| |||| ||| || |
Sbjct: 419 ttggcatcttcaagccatccttggttacatggttggaaacagatctctttagtctaggtc 478

                                                                       
Query: 456 taggattcctaatgctgtcaatgggactaacattgacatttgaagatttcaggagatgtt 515
           | ||||| || ||||| || |||||  | ||  | || |||||||||||||| |||||||
Sbjct: 479 ttggatttcttatgctttccatgggtttgactcttacgtttgaagatttcagaagatgtt 538

                                                               
Query: 516 taaggaatccatggacagttggtgtgggatttcttgcgcaatatttgatcaa 567
           || | ||||||||||| || ||||| || |||||||| |||||| |||||||
Sbjct: 539 tacgtaatccatggacggtgggtgttggttttcttgctcaatatatgatcaa 590



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>dbj|AK111326.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-D10, full
           insert sequence
          Length = 1289

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 73  ctccatggcatccgtctcccgcgctctccgcccgcggccgc 113
           ||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 401 ctccatggcgtccgtctcccgagccctccgcccgcggccgc 441



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>gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete
             sequence
          Length = 87978

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 87/107 (81%)
 Strand = Plus / Plus

                                                                         
Query: 425   tggttggagactgatctttttactctgggcctaggattcctaatgctgtcaatgggacta 484
             |||||||| || ||||| |||||||| || || ||||| || ||||| || |||||  | 
Sbjct: 27346 tggttggaaacagatctctttactctaggtcttggatttcttatgctttccatgggtttg 27405

                                                            
Query: 485   acattgacatttgaagatttcaggagatgtttaaggaatccatggac 531
             ||  | || |||||||||||||| ||||||||| | |||||||||||
Sbjct: 27406 actcttacgtttgaagatttcagaagatgtttacgtaatccatggac 27452



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>gb|AC151766.1| Ornithorhynchus anatinus chromosome UNK clone OABb-433A1, complete
             sequence
          Length = 161653

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    ccctctccactccatggcat 83
             ||||||||||||||||||||
Sbjct: 19306 ccctctccactccatggcat 19287



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>ref|XM_476894.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1615

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 102 gcccgcggccgcgcctcgccgctc 125
           ||||||||||||||| ||||||||
Sbjct: 53  gcccgcggccgcgccgcgccgctc 76



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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
               sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 51      cttccgcgacctgccctctc 70
               ||||||||||||||||||||
Sbjct: 1322167 cttccgcgacctgccctctc 1322186



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>gb|AC084310.16| Mus musculus chromosome 1, clone RP23-10C10, complete sequence
          Length = 194800

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    gccctctccactccatggca 82
             ||||||||||||||||||||
Sbjct: 99070 gccctctccactccatggca 99089



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>ref|XM_742231.1| Aspergillus fumigatus Af293 hypothetical protein (Afu8g05210) partial
            mRNA
          Length = 1323

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 116  ctcgccgctcctcgtctcgg 135
            ||||||||||||||||||||
Sbjct: 1272 ctcgccgctcctcgtctcgg 1253



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>ref|XM_569705.1| Cryptococcus neoformans var. neoformans JEC21 serine/threonin
          kinase (CNC04370) partial mRNA
          Length = 3203

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 51 cttccgcgacctgccctctc 70
          ||||||||||||||||||||
Sbjct: 52 cttccgcgacctgccctctc 71



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>gb|AF426384.1| Danio rerio deltaD protein gene, complete cds
          Length = 13352

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 554  caatatttgatcaaacctatgcta 577
            |||||||| |||||||||||||||
Sbjct: 5609 caatattttatcaaacctatgcta 5632



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>emb|AL591042.5| Human DNA sequence from clone RP11-480L11 on chromosome 1 Contains part
             of the VAV3 gene for VAV3 oncogene, complete sequence
          Length = 148028

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    acctgccctctccactccat 78
             ||||||||||||||||||||
Sbjct: 50334 acctgccctctccactccat 50353



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>emb|AL606508.12| Mouse DNA sequence from clone RP23-180B9 on chromosome 11 Contains the
             3' end of a novel gene and a CpG island, complete sequence
          Length = 189315

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 509   agatgtttaaggaatccatg 528
             ||||||||||||||||||||
Sbjct: 93884 agatgtttaaggaatccatg 93903



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 102     gcccgcggccgcgcctcgccgctc 125
               ||||||||||||||| ||||||||
Sbjct: 4489815 gcccgcggccgcgccgcgccgctc 4489838



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>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1046_F10
          Length = 118472

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 102   gcccgcggccgcgcctcgccgctc 125
             ||||||||||||||| ||||||||
Sbjct: 68534 gcccgcggccgcgccgcgccgctc 68557



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>dbj|AK106871.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-D08, full
           insert sequence
          Length = 1615

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 102 gcccgcggccgcgcctcgccgctc 125
           ||||||||||||||| ||||||||
Sbjct: 53  gcccgcggccgcgccgcgccgctc 76



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>gb|AF100933.1|AF100933 Oncorhynchus mykiss carbonyl reductase/20beta-hydroxysteroid
            dehydrogenase A gene, complete cds
          Length = 3010

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 525  catggacagttggtgtggga 544
            ||||||||||||||||||||
Sbjct: 2723 catggacagttggtgtggga 2742



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>gb|AF100932.1|AF100932 Oncorhynchus mykiss carbonyl reductase/20beta-hydroxysteroid
            dehydrogenase B gene, complete cds
          Length = 5522

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 525  catggacagttggtgtggga 544
            ||||||||||||||||||||
Sbjct: 5227 catggacagttggtgtggga 5246



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>gb|AF100931.1|AF100931 Oncorhynchus mykiss carbonyl reductase/20beta-hydroxysteroid
           dehydrogenase A mRNA, complete cds
          Length = 1278

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 525 catggacagttggtgtggga 544
           ||||||||||||||||||||
Sbjct: 913 catggacagttggtgtggga 932



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>gb|AF100930.1|AF100930 Oncorhynchus mykiss carbonyl reductase/20beta-hydroxysteroid
           dehydrogenase B mRNA, complete cds
          Length = 1216

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 525 catggacagttggtgtggga 544
           ||||||||||||||||||||
Sbjct: 904 catggacagttggtgtggga 923



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>dbj|AP006638.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT47I16, TM0208c,
             complete sequence
          Length = 48081

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   attcctaatgctgtcaatgg 479
             ||||||||||||||||||||
Sbjct: 19311 attcctaatgctgtcaatgg 19330



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>gb|U19741.1|UPU19741 Urochloa panicoides carbonic anhydrase 1 mRNA, complete cds
          Length = 1208

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 90  cccgcgctctccgcccgcggccgc 113
           |||||||||||||||||| |||||
Sbjct: 75  cccgcgctctccgcccgccgccgc 98



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>emb|AL672076.10| Mouse DNA sequence from clone RP23-161N17 on chromosome 4, complete
            sequence
          Length = 208396

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 506  aggagatgtttaaggaatccatgg 529
            ||||||||||||||||| ||||||
Sbjct: 5143 aggagatgtttaaggaaaccatgg 5120


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,226,007
Number of Sequences: 3902068
Number of extensions: 4226007
Number of successful extensions: 99193
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99069
Number of HSP's gapped (non-prelim): 124
length of query: 598
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 575
effective length of database: 17,143,297,704
effective search space: 9857396179800
effective search space used: 9857396179800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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