>CIR1A_MOUSE (Q8R2N2) Cirhin (Testis-expressed gene 292 protein)|
          Length = 686

 Score = 90.9 bits (224), Expect = 3e-18
 Identities = 59/194 (30%), Positives = 101/194 (52%), Gaps = 3/194 (1%)
 Frame = +1

Query: 64  VVHLKSKGSRKIIASAVSTNGMLFAYSDCVKPCLFALRHKGGKKFSLDKM-ELPKGIPSS 240
           ++HLK+KG   II S VS  G   AYS   +  L+ L+++     SL ++ +LP  + S+
Sbjct: 382 LLHLKTKGPENIICSCVSPCGSWIAYSTASRFFLYRLKYERDN-ISLQRVSKLPSFLRSA 440

Query: 241 QSMMFTADSSSLLLSCNDGKIYVVDIASRKISNI--FHPTRKIDGAKTSSKEQPVTKMFV 414
             ++F+ DS+ LL++ N G +++V ++     ++  F P         S   + +  + V
Sbjct: 441 LHILFSEDSTKLLVASNQGSLHIVHLSEGSFKHLHTFQPQ--------SGTVEAMCLLAV 492

Query: 415 SADGQWVAAANCFGDVYIFNLEIQRQHWFIPRMNDGSVTAGGFCPKNNALVITTSRNEVY 594
           S DG W+AA+     V++++L   + H  +P  N   VTA    P  N LVI  S  +V+
Sbjct: 493 SPDGNWLAASGTSAGVHVYDLHHLKLHCTVPAYNF-PVTALAIAPNTNNLVIAHSDQQVF 551

Query: 595 VFDVEAKELGEWSK 636
            F +  K+  EWS+
Sbjct: 552 EFSIPEKQYTEWSR 565

>CIR1A_HUMAN (Q969X6) Cirhin|
          Length = 686

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 52/193 (26%), Positives = 96/193 (49%), Gaps = 2/193 (1%)
 Frame = +1

Query: 64  VVHLKSKGSRKIIASAVSTNGMLFAYSDCVKPCLFALRHKGGKKFSLDKMELPKGIPSSQ 243
           ++HLK+KG   II S +S  G   AYS   +  L+ L ++          ++P  + S+ 
Sbjct: 382 LLHLKTKGPENIICSCISPCGSWIAYSTVSRFFLYRLNYEHDNISLKRVSKMPAFLRSAL 441

Query: 244 SMMFTADSSSLLLSCNDGKIYVVDIASRKISNI--FHPTRKIDGAKTSSKEQPVTKMFVS 417
            ++F+ DS+ L ++ N G +++V ++     ++  F P         S   + +  + VS
Sbjct: 442 QILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQ--------SGTVEAMCLLAVS 493

Query: 418 ADGQWVAAANCFGDVYIFNLEIQRQHWFIPRMNDGSVTAGGFCPKNNALVITTSRNEVYV 597
            DG W+AA+     V+++N++  + H  +P  N   VTA    P  N LVI  S  +V+ 
Sbjct: 494 PDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYN-FPVTAMAIAPNTNNLVIAHSDQQVFE 552

Query: 598 FDVEAKELGEWSK 636
           + +  K+  +WS+
Sbjct: 553 YSIPDKQYTDWSR 565

>WDR50_HUMAN (Q9Y5J1) WD-repeat protein 50|
          Length = 556

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 24/74 (32%), Positives = 37/74 (50%)
 Frame = +1

Query: 253 FTADSSSLLLSCNDGKIYVVDIASRKISNIFHPTRKIDGAKTSSKEQPVTKMFVSADGQW 432
           F++DS  +  S  DG++YV D+ SRK  N F     + G   ++          S +GQ+
Sbjct: 390 FSSDSKKVYASSGDGEVYVWDVNSRKCLNRFVDEGSLYGLSIAT----------SRNGQY 439

Query: 433 VAAANCFGDVYIFN 474
           VA  +  G V I+N
Sbjct: 440 VACGSNCGVVNIYN 453

>UTP4_YEAST (Q06679) U3 small nucleolar RNA-associated protein 4 (U3|
            snoRNA-associated protein 4)
          Length = 776

 Score = 36.2 bits (82), Expect = 0.090
 Identities = 43/211 (20%), Positives = 91/211 (43%), Gaps = 12/211 (5%)
 Frame = +1

Query: 64   VVHLKSKGSRKIIASAVSTNGMLFAYSDCVKPCLFALRHKGGKKFSLDKMELPKGIPSSQ 243
            V  L  K  + I   ++S +G +          +F L+  G K   + K++    + +S 
Sbjct: 417  VCKLTLKDDQNISTCSLSPDGQVLVVGRPSTTKVFHLQPVGNK-LKVTKLDNDLLLRTST 475

Query: 244  SMMFTADSSSLLLSCNDGKIYVVDIASRKISNIFH-PTRKIDGAKTSSKEQPVTKM-FVS 417
             ++   D+S +++   +  +++VD+ S +          ++   K+S K   + ++  + 
Sbjct: 476  KLVKFIDNSKIVICSCEDDVFIVDLESEEDEKPQEVELLEVTSTKSSIKVPYINRINHLE 535

Query: 418  ADGQWVAAANCFGDVYIFNLEIQRQHWFIPRMNDGSVTAGGFCPKNNALVITTSRNEVYV 597
             D      +   G V I +L+  R    + R+N+  +TA        ++V+ T+ N++Y 
Sbjct: 536  VDQNIAVISRGCGVVDILDLKA-RISKPLARLNN-FITAVHINTSRKSVVVITADNKIYE 593

Query: 598  FDVEAKE----------LGEWSKRHTHELPK 660
            F++              L +WSK +T  LPK
Sbjct: 594  FNMNLNSEAENEDSESVLTQWSKNNTDNLPK 624

>WDR67_XENLA (Q6DDI6) WD-repeat protein 67|
          Length = 1089

 Score = 36.2 bits (82), Expect = 0.090
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
 Frame = +1

Query: 331 ISNIFHPTRKIDGAKTSSKEQPVTKMFVSADGQWVAAANCFGDVYIFNLEIQRQHWFIPR 510
           I NI H    +D +  S   + +   F SA G    A +  G+VY+FNL   R  + + +
Sbjct: 28  IVNIVH----VDASHLSKSTRFLQAAFDSA-GDCFLAGDHLGNVYMFNLN--RNRFDLVQ 80

Query: 511 MNDGSVTAGGF-CPKNNALVITTSRNEVYVFDVEAKELGEWSKRH 642
               + TA  F   +    ++  + N V  FD  AKEL  W + H
Sbjct: 81  KTMQACTAIAFNLHRKTEFLVALADNSVKCFDAGAKELVSWMRGH 125

>WDR67_XENTR (Q6DEY8) WD-repeat protein 67|
          Length = 1088

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = +1

Query: 331 ISNIFHPTRKIDGAKTSSKEQPVTKMFVSADGQWVAAANCFGDVYIFNLEIQRQHWFIPR 510
           I NI H    +D +  S   + +   F SA   ++A  +  G+VY+FNL   R  + + +
Sbjct: 28  IVNIVH----VDASHPSKSARFLHAGFDSAGDSFIAGDH-LGNVYLFNLN--RNRFDLVQ 80

Query: 511 MNDGSVTAGGF-CPKNNALVITTSRNEVYVFDVEAKELGEWSKRH 642
               + TA  F   +    ++  + N V  FD  AKEL  W + H
Sbjct: 81  KTMQACTAIAFNLHRRTEFLVALADNSVKCFDTGAKELVSWMRGH 125

>A16L1_HUMAN (Q676U5) Autophagy-related protein 16-1 (APG16-like 1)|
          Length = 607

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
 Frame = +1

Query: 277 LLSCN-DGKIYVVDIASRKISNIFHPTRKIDGAKTSSKEQPVTKMFVSADGQWVAAANCF 453
           LLSC+ D  + V+D+ +  I   F       G K  S     T++  S DG +VAA +  
Sbjct: 503 LLSCSRDDLLKVIDLRTNAIKQTF----SAPGFKCGSDW---TRVVFSPDGSYVAAGSAE 555

Query: 454 GDVYIFNLEIQRQHWFIPRMNDGSVTAGGFCPKNNALV 567
           G +YI+++   +    + + +  S+ A  + P  + +V
Sbjct: 556 GSLYIWSVLTGKVEKVLSKQHSSSINAVAWSPSGSHVV 593

>PHF1_ARATH (Q8GYE0) Sec12-like protein 1 (Protein PHOSPHATE TRANSPORTER|
           TRAFFIC FACILITATOR 1) (PHF-1)
          Length = 398

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +1

Query: 367 GAKTSSKEQPVTKMFVSADGQWVAAANCFGDVYIFNLEIQRQHWFIPRMNDG-SVTAGGF 543
           G K  S++   T M VS DG+++A     GDV +  ++    + +  R++ G S+ +  F
Sbjct: 248 GFKKLSRKTAST-MAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEF 306

Query: 544 CPKNNALVITTSR-NEVYVFDVEAKELGEW 630
           CP    ++ T+S   E+       KE  EW
Sbjct: 307 CPSERVMLTTSSEWGEMVTKLTVPKEWKEW 336

>WDR50_MOUSE (Q5SSI6) WD-repeat protein 50|
          Length = 552

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +1

Query: 253 FTADSSSLLLSCNDGKIYVVDIASRKISNIFHPTRKIDGAKTSSKEQPVTKMFVSADGQW 432
           F++DS  +     +G++YV D+ SRK  N F     + G   ++          S +GQ+
Sbjct: 386 FSSDSKRIYTYSENGEVYVWDVNSRKCMNRFLDEGSLCGLSIAA----------SKNGQY 435

Query: 433 VAAANCFGDVYIFN 474
           VA  +  G V I+N
Sbjct: 436 VACGSKSGVVNIYN 449

>A16L1_MOUSE (Q8C0J2) Autophagy-related protein 16-1 (APG16-like 1)|
          Length = 607

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +1

Query: 277 LLSCN-DGKIYVVDIASRKISNIFHPTRKIDGAKTSSKEQPVTKMFVSADGQWVAAANCF 453
           LLSC+ D  + V+D+ +  +   F       G K  S     T++  S DG +VAA +  
Sbjct: 503 LLSCSRDDLLKVIDLRTNAVKQTF----SAPGFKCGSDW---TRVVFSPDGSYVAAGSAE 555

Query: 454 GDVYIFNLEIQRQHWFIPRMNDGSVTAGGFCP 549
           G +Y++++   +    + + +  S+ A  + P
Sbjct: 556 GSLYVWSVLTGKVEKVLSKQHSSSINAVAWAP 587

>A16L1_PONPY (Q5RAC9) Autophagy-related protein 16-1 (APG16-like 1)|
          Length = 607

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +1

Query: 277 LLSCN-DGKIYVVDIASRKISNIFHPTRKIDGAKTSSKEQPVTKMFVSADGQWVAAANCF 453
           LLSC+ D  + V+D+ +  I   F       G K  S     T++  S DG +VAA +  
Sbjct: 503 LLSCSRDDLLKVIDLRTNAIKQTF----SAPGFKCGSDW---TRVVFSPDGSYVAAGSAE 555

Query: 454 GDVYIFNLEIQRQHWFIPRMNDGSVTAGGFCP 549
           G +Y +++   +    + + +  S+ A  + P
Sbjct: 556 GSLYTWSVLTGKVEKVLSKQHSSSINAVAWSP 587

>STLP2_ARATH (Q39221) Sec12-like protein 2|
          Length = 393

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +1

Query: 385 KEQPVTKMFVSADGQWVAAANCFGDVYIFNLEIQRQHWFIPRMNDGSVTAGGFCPKNNAL 564
           K+  ++   VSADG+ +A     GDV I      +    + + + G VTA  F P +  L
Sbjct: 284 KKNSISAFNVSADGKLLAIGTLEGDVLILESTRMQTIQVVKKAHLGLVTALTFSPDSRGL 343

Query: 565 VITTSRNEVYVFDVEAK 615
           V  +  +   +  +E K
Sbjct: 344 VSVSFDSRARLTMIEQK 360

>SYIM_HUMAN (Q9NSE4) Isoleucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.5) (Isoleucine--tRNA ligase) (IleRS)
          Length = 1012

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 322 SRKISNIFHPTRKIDGAKTSSKEQPVTKMFVSAD--GQWVAAANCFGDVYI 468
           S+ + N+ HP   ++G +  SKE P       AD    WVA +N F +V I
Sbjct: 666 SKSLGNVIHPDVVVNGGQDQSKEPP-----YGADVLRWWVADSNVFTEVAI 711

>APAF_BRARE (Q9I9H8) Apoptotic protease-activating factor 1 (Apaf-1)|
          Length = 1261

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
 Frame = +1

Query: 298  KIYVVDIASRKISN--IFHPTRKIDGAKTSSKEQPVTKMFVSADGQWVAAANCFGDVYIF 471
            ++ +   ++ K +N  +++P +K          +PV     S +  ++A ++  G + +F
Sbjct: 716  RVLLATCSNDKFTNTRLWNPNKKTSQNTMFGHMEPVNHCCFSPNDLYLATSSSDGSLKLF 775

Query: 472  NLEIQRQHW-------FIPRMNDGSVTAGGFCPK---NNALVITTSRNEVYVFDVEAKEL 621
             +    + W       F P  +D  + A   C     + + +I  +RN V+VFDVE  +L
Sbjct: 776  EVSSANE-WKSIDVDSFFPE-SDEEIKAMVKCSTWSADGSQIICAARNTVFVFDVETSDL 833

>HSV2_YARLI (Q6CEI9) SVP1-like protein 2|
          Length = 359

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 3/143 (2%)
 Frame = +1

Query: 205 DKMELPKGIPSSQSMMFTADSSSLLLSCNDGKIYVVDIASR-KISNIFHPTRKIDGAKTS 381
           D  + P GI +     F+ D+  +  S   G+I VVD++   +  N+    R        
Sbjct: 140 DTADNPHGIAA-----FSGDTV-VFPSRTPGQIQVVDLSQEGQARNLVSIIR-------- 185

Query: 382 SKEQPVTKMFVSADGQWVAAANCFGDVYIFNLEIQRQ--HWFIPRMNDGSVTAGGFCPKN 555
           + + PV  + +SADG  VA+ +  G +   +        H F   ++   V    F P  
Sbjct: 186 AHKSPVRCVTLSADGSVVASCSDNGTLVRLHSTSNTALLHEFRRGLDRAVVYNMAFSPSG 245

Query: 556 NALVITTSRNEVYVFDVEAKELG 624
           + L + + +N ++VFD  A   G
Sbjct: 246 SRLAVLSDKNTMHVFDTSASASG 268

>SYIM_MACFA (Q4R646) Isoleucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.5) (Isoleucine--tRNA ligase) (IleRS) (Fragment)
          Length = 993

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 322 SRKISNIFHPTRKIDGAKTSSKEQPVTKMFVSAD--GQWVAAANCFGDVYI 468
           S+ + N+ HP   ++G +  SKE P       AD    WVA +N F +V I
Sbjct: 647 SKSLGNVIHPDVVVNGGQDQSKEPP-----YGADVLRWWVADSNVFTEVAI 692

>MCL1_SCHPO (Q9C107) Minichromosome loss protein 1|
          Length = 815

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 2/146 (1%)
 Frame = +1

Query: 190 KKFSLDKMELPKGIPSSQSMMF-TADSSSLLLSCN-DGKIYVVDIASRKISNIFHPTRKI 363
           +KF +   E P  I + Q  +   A + +   +C+ D  + V  I S        PT   
Sbjct: 38  RKFQVGSDEEPDSIDNHQDPITGIAVAENYFCTCSEDATVCVYPIDS--------PTEHT 89

Query: 364 DGAKTSSKEQPVTKMFVSADGQWVAAANCFGDVYIFNLEIQRQHWFIPRMNDGSVTAGGF 543
             A+T+    P+  +  S DG W+A A+    V + +        F  R    S     +
Sbjct: 90  LLARTTL---PIRDVAYSVDGNWIAIASDETAVKVVS-STDSSQIFSLRPAKASNKHVTY 145

Query: 544 CPKNNALVITTSRNEVYVFDVEAKEL 621
            P  N L +++    +Y +D + +EL
Sbjct: 146 SPNGNFLAVSSCNGILYFYDTQTREL 171

>GYRB_RICPR (Q9ZCX2) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 807

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 208 YLERT--SFHPCVLVQKGRVSHNLSRQIAFHW 119
           Y++R   + HPC++V    V   +S ++A HW
Sbjct: 238 YIDRAKHAIHPCIVVNTVHVESGISLELALHW 269

>SED4_YEAST (P25365) Protein SED4|
          Length = 1065

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/67 (26%), Positives = 36/67 (53%)
 Frame = +1

Query: 397 VTKMFVSADGQWVAAANCFGDVYIFNLEIQRQHWFIPRMNDGSVTAGGFCPKNNALVITT 576
           +T M VS + ++VA ++    V I ++E  +    +PR+++ ++T   F P +  L  T+
Sbjct: 264 ITSMDVSPNKKFVALSSNDNLVAIVSVEKLKLVQLVPRVHESTITKVTFSPDSRYLASTS 323

Query: 577 SRNEVYV 597
             N + V
Sbjct: 324 MGNTINV 330

>NEGR1_PONPY (Q5R412) Neuronal growth regulator 1 precursor|
          Length = 354

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 108 CCFHQWNAICLLRLCETLPFC 170
           CC +QW A  LL LC  LP C
Sbjct: 11  CCSNQWLAAVLLSLCCLLPSC 31

>NEGR1_HUMAN (Q7Z3B1) Neuronal growth regulator 1 precursor|
          Length = 354

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 108 CCFHQWNAICLLRLCETLPFC 170
           CC +QW A  LL LC  LP C
Sbjct: 11  CCSNQWLAAVLLSLCCLLPSC 31

>UTP13_YEAST (Q05946) U3 small nucleolar RNA-associated protein 13 (U3|
           snoRNA-associated protein 13)
          Length = 817

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
 Frame = +1

Query: 58  RQVVH-LKSKGSRKIIASAVSTNGMLFAYSDCVKPCLFALRH-KGGKKFSLDKMELPKGI 231
           R+++H + ++  ++I A  ++ +G    Y    +  L  + H K GK     K+      
Sbjct: 50  RKILHKISNEDEQEITALKLTPDGQYLTYVSQAQ--LLKIFHLKTGKVVRSMKI------ 101

Query: 232 PSSQSMMFTADSSSLLLSCN--DGKIYVVDIASRKISNIF 345
            SS S +  ADS+S LL+    DG I VVDI +  I++ F
Sbjct: 102 -SSPSYILDADSTSTLLAVGGTDGSIIVVDIENGYITHSF 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,903,767
Number of Sequences: 219361
Number of extensions: 2253022
Number of successful extensions: 5463
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5452
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)