Clone Name | bags9d11 |
---|---|
Clone Library Name | barley_pub |
>gb|AC134046.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0040G18, complete sequence Length = 172281 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Minus Query: 40 atgtggaggctgaaggtgtcggagggcggcagcccgtggctgcg 83 ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 160258 atgtggaggctgaaggtgtcggagggcggcagcccatggctgcg 160215
>dbj|AK066327.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062J12, full insert sequence Length = 2578 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Plus Query: 40 atgtggaggctgaaggtgtcggagggcggcagcccgtggctgcg 83 ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 103 atgtggaggctgaaggtgtcggagggcggcagcccatggctgcg 146
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Plus Query: 40 atgtggaggctgaaggtgtcggagggcggcagcccgtggctgcg 83 ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 4511535 atgtggaggctgaaggtgtcggagggcggcagcccatggctgcg 4511578 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 362 caagcgcatgatggtcattggcctggtgacaatagtggaattatgttccttatgcc 417 ||||| |||||||| ||||||||||||||| | |||||||| ||||| ||||||| Sbjct: 10229459 caagcacatgatgggcattggcctggtgactacagtggaatcttgttcattatgcc 10229404 Score = 40.1 bits (20), Expect = 8.9 Identities = 114/144 (79%), Gaps = 1/144 (0%) Strand = Plus / Minus Query: 95 gcttcctcggtagagcggtgtgggagtttgatcctgagctcggtacgccggnaggaacgc 154 ||||||| || || || ||||||||||| ||||| || ||| ||||||| |||| ||| Sbjct: 10237924 gcttcctaggcagggcagtgtgggagttcgatcccgacgccggcacgccgg-aggagcgc 10237866 Query: 155 gcagaggttgagaggttgcgccgagactacacgcggtgccgtttcgagaagagggagtca 214 || ||||| | |||| ||||||| |||| ||| || ||| ||| ||| || ||||||| Sbjct: 10237865 gccgaggtggcgaggctgcgccgcgacttcacccgccaccgcttccagaggaaggagtca 10237806 Query: 215 caggatcttcttatgcgcatgcag 238 ||||| || || ||||| |||||| Sbjct: 10237805 caggacctcctcatgcggatgcag 10237782
>gb|AY618699.1| Avena strigosa strain CI3815 beta-amyrin synthase gene, complete cds Length = 2274 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 371 gatggtcattggcctggtgacaatagtggaattatgttccttatgcctatgtttatattc 430 ||||| |||||||||||||| | ||||| ||| | ||| |||||||||| |||||||| Sbjct: 334 gatgggcattggcctggtgattacagtgggattctcttcattatgcctatcattatattc 393 Query: 431 tctttatatgttac 444 |||||||||||||| Sbjct: 394 tctttatatgttac 407 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 484 tgagatatgccgtcacatttacaaccatcagaatgaggatggtggttgggg 534 ||||||||| || |||||||||| || |||||||| |||||||||||||| Sbjct: 447 tgagatatgtcgctacatttacaatcaacagaatgaagatggtggttgggg 497 Score = 42.1 bits (21), Expect = 2.3 Identities = 48/57 (84%) Strand = Plus / Plus Query: 208 ggagtcacaggatcttcttatgcgcatgcagtatgcaaaattaaacccccttccggc 264 |||||||||||| |||||| | ||| ||||||| |||||| ||||| |||||||| Sbjct: 168 ggagtcacaggaccttcttctacgcttgcagtacgcaaaagacaaccctcttccggc 224
>gb|AY618698.1| Avena prostrata strain CC7060 beta-amyrin synthase gene, complete cds Length = 2274 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 371 gatggtcattggcctggtgacaatagtggaattatgttccttatgcctatgtttatattc 430 ||||| |||||||||||||| | ||||| ||| | ||| |||||||||| |||||||| Sbjct: 334 gatgggcattggcctggtgattacagtgggattctcttcattatgcctatcattatattc 393 Query: 431 tctttatatgttac 444 |||||||||||||| Sbjct: 394 tctttatatgttac 407 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 500 atttacaaccatcagaatgaggatggtggttgggg 534 |||||||| || |||||||| |||||||||||||| Sbjct: 463 atttacaatcaacagaatgaagatggtggttgggg 497 Score = 42.1 bits (21), Expect = 2.3 Identities = 48/57 (84%) Strand = Plus / Plus Query: 208 ggagtcacaggatcttcttatgcgcatgcagtatgcaaaattaaacccccttccggc 264 |||||||||||| |||||| | ||| ||||||| |||||| ||||| |||||||| Sbjct: 168 ggagtcacaggaccttcttctacgcttgcagtacgcaaaaaacaaccctcttccggc 224
>gb|AY618697.1| Avena longiglumis strain CC7250 beta-amyrin synthase gene, complete cds Length = 2274 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 371 gatggtcattggcctggtgacaatagtggaattatgttccttatgcctatgtttatattc 430 ||||| |||||||||||||| | ||||| ||| | ||| |||||||||| |||||||| Sbjct: 334 gatgggcattggcctggtgattacagtgggattctcttcattatgcctatcattatattc 393 Query: 431 tctttatatgttac 444 |||||||||||||| Sbjct: 394 tctttatatgttac 407 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 484 tgagatatgccgtcacatttacaaccatcagaatgaggatggtggttgggg 534 ||||||||| || |||||||||| || |||||||| |||||||||||||| Sbjct: 447 tgagatatgtcgctacatttacaatcaacagaatgaagatggtggttgggg 497 Score = 42.1 bits (21), Expect = 2.3 Identities = 48/57 (84%) Strand = Plus / Plus Query: 208 ggagtcacaggatcttcttatgcgcatgcagtatgcaaaattaaacccccttccggc 264 |||||||||||| |||||| | ||| ||||||| |||||| ||||| |||||||| Sbjct: 168 ggagtcacaggaccttcttctacgcttgcagtacgcaaaagacaaccctcttccggc 224
>gb|AY618696.1| Avena longiglumis strain CC4719 beta-amyrin synthase gene, complete cds Length = 2274 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 371 gatggtcattggcctggtgacaatagtggaattatgttccttatgcctatgtttatattc 430 ||||| |||||||||||||| | ||||| ||| | ||| |||||||||| |||||||| Sbjct: 334 gatgggcattggcctggtgattacagtgggattctcttcattatgcctatcattatattc 393 Query: 431 tctttatatgttac 444 |||||||||||||| Sbjct: 394 tctttatatgttac 407 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 484 tgagatatgccgtcacatttacaaccatcagaatgaggatggtggttgggg 534 ||||||||| || |||||||||| || |||||||| |||||||||||||| Sbjct: 447 tgagatatgtcgctacatttacaatcaacagaatgaagatggtggttgggg 497 Score = 40.1 bits (20), Expect = 8.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 208 ggagtcacaggatcttcttatgcgcatgcagtatgcaaaa 247 |||||||||||| |||||| | ||| ||||||| |||||| Sbjct: 168 ggagtcacaggaccttcttctacgcttgcagtacgcaaaa 207
>emb|AJ311789.1|AST311789 Avena strigosa mRNA for beta-amyrin synthase (bAS1 gene) Length = 2274 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 371 gatggtcattggcctggtgacaatagtggaattatgttccttatgcctatgtttatattc 430 ||||| |||||||||||||| | ||||| ||| | ||| |||||||||| |||||||| Sbjct: 334 gatgggcattggcctggtgattacagtgggattctcttcattatgcctatcattatattc 393 Query: 431 tctttatatgttac 444 |||||||||||||| Sbjct: 394 tctttatatgttac 407 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 484 tgagatatgccgtcacatttacaaccatcagaatgaggatggtggttgggg 534 ||||||||| || |||||||||| || |||||||| |||||||||||||| Sbjct: 447 tgagatatgtcgctacatttacaatcaacagaatgaagatggtggttgggg 497 Score = 42.1 bits (21), Expect = 2.3 Identities = 48/57 (84%) Strand = Plus / Plus Query: 208 ggagtcacaggatcttcttatgcgcatgcagtatgcaaaattaaacccccttccggc 264 |||||||||||| |||||| | ||| ||||||| |||||| ||||| |||||||| Sbjct: 168 ggagtcacaggaccttcttctacgcttgcagtacgcaaaagacaaccctcttccggc 224
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 1e-05 Identities = 112/138 (81%), Gaps = 1/138 (0%) Strand = Plus / Minus Query: 40 atgtggaggctgaaggtgtcggagggcggcagcccgtggctgcgttccccgagtagcttc 99 |||||||||||||||||| | ||||||||| || ||| |||||| || ||| | ||||| Sbjct: 2156175 atgtggaggctgaaggtggccgagggcggcggcgcgttgctgcggtcgacgaatggcttc 2156116 Query: 100 ctcggtagagcggtgtgggagtttgatcctgagctcggtacgccggnaggaacgcgcaga 159 ||||| | |||||||||||| | || || || | ||| ||||||| |||| ||||| || Sbjct: 2156115 ctcgggcgggcggtgtgggagctcgaccccgaccacggcacgccgg-aggaccgcgccga 2156057 Query: 160 ggttgagaggttgcgccg 177 || |||||| ||||||| Sbjct: 2156056 cgtcgagagggtgcgccg 2156039
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1679_B08 Length = 142529 Score = 60.0 bits (30), Expect = 1e-05 Identities = 112/138 (81%), Gaps = 1/138 (0%) Strand = Plus / Minus Query: 40 atgtggaggctgaaggtgtcggagggcggcagcccgtggctgcgttccccgagtagcttc 99 |||||||||||||||||| | ||||||||| || ||| |||||| || ||| | ||||| Sbjct: 70868 atgtggaggctgaaggtggccgagggcggcggcgcgttgctgcggtcgacgaatggcttc 70809 Query: 100 ctcggtagagcggtgtgggagtttgatcctgagctcggtacgccggnaggaacgcgcaga 159 ||||| | |||||||||||| | || || || | ||| ||||||| |||| ||||| || Sbjct: 70808 ctcgggcgggcggtgtgggagctcgaccccgaccacggcacgccgg-aggaccgcgccga 70750 Query: 160 ggttgagaggttgcgccg 177 || |||||| ||||||| Sbjct: 70749 cgtcgagagggtgcgccg 70732
>dbj|AK070534.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062I08, full insert sequence Length = 2514 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 480 aacgtgagatatgccgtcacatttacaaccatcagaatgaggatggtggttgggggacac 539 |||| |||||||| || |||||||||| ||||||||||| ||||| || |||||||||| Sbjct: 526 aacgagagatatgtcgatacatttacaatcatcagaatgaagatggcggctgggggacac 585 Query: 540 atgttattgg 549 | ||| |||| Sbjct: 586 aggttcttgg 595 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 362 caagcgcatgatggtcattggcctggtgacaatagtggaattatgttccttatgcc 417 ||||| |||||||| ||||||||||||||| | |||||||| ||||| ||||||| Sbjct: 408 caagcacatgatgggcattggcctggtgactacagtggaatcttgttcattatgcc 463 Score = 56.0 bits (28), Expect = 2e-04 Identities = 125/156 (80%), Gaps = 1/156 (0%) Strand = Plus / Plus Query: 95 gcttcctcggtagagcggtgtgggagtttgatcctgagctcggtacgccggnaggaacgc 154 ||||||| || || || ||||||||||| ||||| || ||| ||||||| |||| ||| Sbjct: 142 gcttcctaggcagggcagtgtgggagttcgatcccgacgccggcacgccgg-aggagcgc 200 Query: 155 gcagaggttgagaggttgcgccgagactacacgcggtgccgtttcgagaagagggagtca 214 || ||||| | |||| ||||||| |||| ||| || ||| ||| ||| || ||||||| Sbjct: 201 gccgaggtggcgaggctgcgccgcgacttcacccgccaccgcttccagaggaaggagtca 260 Query: 215 caggatcttcttatgcgcatgcagtatgcaaaatta 250 ||||| || || ||||| ||||||||||| |||||| Sbjct: 261 caggacctcctcatgcggatgcagtatgccaaatta 296
>gb|AC135562.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0087P19, complete sequence Length = 172066 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 362 caagcgcatgatggtcattggcctggtgacaatagtggaattatgttccttatgcc 417 ||||| |||||||| ||||||||||||||| | |||||||| ||||| ||||||| Sbjct: 53926 caagcacatgatgggcattggcctggtgactacagtggaatcttgttcattatgcc 53871 Score = 40.1 bits (20), Expect = 8.9 Identities = 114/144 (79%), Gaps = 1/144 (0%) Strand = Plus / Minus Query: 95 gcttcctcggtagagcggtgtgggagtttgatcctgagctcggtacgccggnaggaacgc 154 ||||||| || || || ||||||||||| ||||| || ||| ||||||| |||| ||| Sbjct: 62391 gcttcctaggcagggcagtgtgggagttcgatcccgacgccggcacgccgg-aggagcgc 62333 Query: 155 gcagaggttgagaggttgcgccgagactacacgcggtgccgtttcgagaagagggagtca 214 || ||||| | |||| ||||||| |||| ||| || ||| ||| ||| || ||||||| Sbjct: 62332 gccgaggtggcgaggctgcgccgcgacttcacccgccaccgcttccagaggaaggagtca 62273 Query: 215 caggatcttcttatgcgcatgcag 238 ||||| || || ||||| |||||| Sbjct: 62272 caggacctcctcatgcggatgcag 62249
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 362 caagcgcatgatggtcattggcctggtgacaatagtggaattatgttccttatgcc 417 ||||| |||||||| ||||||||||||||| | |||||||| ||||| ||||||| Sbjct: 10157762 caagcacatgatgggcattggcctggtgactacagtggaatcttgttcattatgcc 10157707 Score = 40.1 bits (20), Expect = 8.9 Identities = 114/144 (79%), Gaps = 1/144 (0%) Strand = Plus / Minus Query: 95 gcttcctcggtagagcggtgtgggagtttgatcctgagctcggtacgccggnaggaacgc 154 ||||||| || || || ||||||||||| ||||| || ||| ||||||| |||| ||| Sbjct: 10166227 gcttcctaggcagggcagtgtgggagttcgatcccgacgccggcacgccgg-aggagcgc 10166169 Query: 155 gcagaggttgagaggttgcgccgagactacacgcggtgccgtttcgagaagagggagtca 214 || ||||| | |||| ||||||| |||| ||| || ||| ||| ||| || ||||||| Sbjct: 10166168 gccgaggtggcgaggctgcgccgcgacttcacccgccaccgcttccagaggaaggagtca 10166109 Query: 215 caggatcttcttatgcgcatgcag 238 ||||| || || ||||| |||||| Sbjct: 10166108 caggacctcctcatgcggatgcag 10166085
>dbj|AK120065.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B12, full insert sequence Length = 5191 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 362 caagcgcatgatggtcattggcctggtgacaatagtggaattatgttccttatgcctatg 421 ||||| |||||||| ||||||||||| || ||||||||||||||| |||||||||| Sbjct: 440 caagcacatgatggacattggcctggcgatttcagtggaattatgttcattatgcctatc 499 Query: 422 tttatatt 429 || ||||| Sbjct: 500 ttgatatt 507 Score = 50.1 bits (25), Expect = 0.009 Identities = 82/101 (81%) Strand = Plus / Plus Query: 147 aggaacgcgcagaggttgagaggttgcgccgagactacacgcggtgccgtttcgagaaga 206 |||| ||||| ||||| |||||| ||||||| || | || | | |||| ||||||| || Sbjct: 225 aggagcgcgccgaggtagagaggatgcgccgtgagtttactctgcgccgcttcgagagga 284 Query: 207 gggagtcacaggatcttcttatgcgcatgcagtatgcaaaa 247 |||| | |||||||| || ||||| ||||||||||||||| Sbjct: 285 gggaagcccaggatctgctcatgcgtatgcagtatgcaaaa 325 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Plus Query: 482 cgtgagatatgccgtcacatttacaaccatcagaatgaggatggtggttgggggacaca 540 ||||||||||| || | || ||||||||||||||||| ||||| ||||||| ||||| Sbjct: 560 cgtgagatatgtcgctatatctacaaccatcagaatgaagatggcagttggggcacaca 618 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 40 atgtggaggctgaaggtgtcggagggcgg 68 ||||||||||||||||| |||||||||| Sbjct: 119 atgtggaggctgaaggtcgcggagggcgg 147
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 362 caagcgcatgatggtcattggcctggtgacaatagtggaattatgttccttatgcctat 420 ||||| |||||||| ||||||||||| || ||||||||||||||| |||||||||| Sbjct: 16206114 caagcacatgatggacattggcctggcgatttcagtggaattatgttcattatgcctat 16206056 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 40 atgtggaggctgaaggtgtcggagggcgg 68 ||||||||||||||||| |||||||||| Sbjct: 16214149 atgtggaggctgaaggtcgcggagggcgg 16214121
>dbj|AP004742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0026F02 Length = 132237 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 362 caagcgcatgatggtcattggcctggtgacaatagtggaattatgttccttatgcctat 420 ||||| |||||||| ||||||||||| || ||||||||||||||| |||||||||| Sbjct: 31006 caagcacatgatggacattggcctggcgatttcagtggaattatgttcattatgcctat 30948 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 40 atgtggaggctgaaggtgtcggagggcgg 68 ||||||||||||||||| |||||||||| Sbjct: 39041 atgtggaggctgaaggtcgcggagggcgg 39013
>dbj|AP004681.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0040M10 Length = 162790 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 362 caagcgcatgatggtcattggcctggtgacaatagtggaattatgttccttatgcctat 420 ||||| |||||||| ||||||||||| || ||||||||||||||| |||||||||| Sbjct: 110907 caagcacatgatggacattggcctggcgatttcagtggaattatgttcattatgcctat 110849 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 40 atgtggaggctgaaggtgtcggagggcgg 68 ||||||||||||||||| |||||||||| Sbjct: 118942 atgtggaggctgaaggtcgcggagggcgg 118914
>dbj|AB122080.1| Panax ginseng mRNA for beta-amyrin synthase, complete cds Length = 2562 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 501 tttacaaccatcagaatgaggatggtggttgggg 534 ||||||||||||| |||||||||||||| ||||| Sbjct: 517 tttacaaccatcaaaatgaggatggtggatgggg 550
>dbj|AB058643.1| Luffa cylindrica LcIMS1 mRNA for isomultiflorenol synthase, complete cds Length = 2551 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 498 acatttacaaccatcagaatgaggatggtggttggggg 535 |||||||||||||||||||||| ||||| || |||||| Sbjct: 590 acatttacaaccatcagaatgaagatgggggatggggg 627
>gb|AY618700.1| Avena ventricosa strain CAV2835 beta-amyrin synthase gene, complete cds Length = 2274 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 484 tgagatatgccgtcacatttacaaccatcagaatgaggatggtggttggggga 536 ||||||||| || |||||||||| || ||||| || |||||||||||||||| Sbjct: 447 tgagatatgtcgctacatttacaatcaacagaacgaagatggtggttggggga 499 Score = 48.1 bits (24), Expect = 0.037 Identities = 81/100 (81%) Strand = Plus / Plus Query: 345 atcagtattgcacgctacaagcgcatgatggtcattggcctggtgacaatagtggaatta 404 ||||||||| | | |||||||| | ||||| || ||||||||||| | ||||| ||| Sbjct: 308 atcagtattccgctctacaagcagacgatggccactggcctggtgattacagtgggattc 367 Query: 405 tgttccttatgcctatgtttatattctctttatatgttac 444 | ||| |||||||||| |||||||||| ||| ||||||| Sbjct: 368 tcttcattatgcctatcattatattctcattacatgttac 407 Score = 42.1 bits (21), Expect = 2.3 Identities = 48/57 (84%) Strand = Plus / Plus Query: 208 ggagtcacaggatcttcttatgcgcatgcagtatgcaaaattaaacccccttccggc 264 |||||||||||| |||||| | ||| ||||||| |||||| ||||| |||||||| Sbjct: 171 ggagtcacaggaccttcttctacgcttgcagtacgcaaaagccaaccctcttccggc 227
>gb|AY618695.1| Avena clauda strain CAV5566/1 beta-amyrin synthase gene, complete cds Length = 2274 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 484 tgagatatgccgtcacatttacaaccatcagaatgaggatggtggttggggga 536 ||||||||| || |||||||||| || ||||| || |||||||||||||||| Sbjct: 447 tgagatatgtcgctacatttacaatcaacagaacgaagatggtggttggggga 499 Score = 48.1 bits (24), Expect = 0.037 Identities = 81/100 (81%) Strand = Plus / Plus Query: 345 atcagtattgcacgctacaagcgcatgatggtcattggcctggtgacaatagtggaatta 404 ||||||||| | | |||||||| | ||||| || ||||||||||| | ||||| ||| Sbjct: 308 atcagtattccgctctacaagcagacgatggccactggcctggtgattacagtgggattc 367 Query: 405 tgttccttatgcctatgtttatattctctttatatgttac 444 | ||| |||||||||| |||||||||| ||| ||||||| Sbjct: 368 tcttcattatgcctatcattatattctcattacatgttac 407 Score = 42.1 bits (21), Expect = 2.3 Identities = 48/57 (84%) Strand = Plus / Plus Query: 208 ggagtcacaggatcttcttatgcgcatgcagtatgcaaaattaaacccccttccggc 264 |||||||||||| |||||| | ||| ||||||| |||||| ||||| |||||||| Sbjct: 171 ggagtcacaggaccttcttctacgcttgcagtacgcaaaagccaaccctcttccggc 227
>dbj|AK107355.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-H11, full insert sequence Length = 1631 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Plus Query: 481 acgtgagatatgccgtcacatttacaaccatcagaatgaggatggtggttgggggacaca 540 ||||||||||||||| |||| |||||| ||||||||| ||||| |||||| | ||||| Sbjct: 473 acgtgagatatgccgctacatctacaacattcagaatgaagatgggggttggagtacaca 532 Query: 541 t 541 | Sbjct: 533 t 533
>dbj|AK100763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119J04, full insert sequence Length = 1567 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Plus Query: 481 acgtgagatatgccgtcacatttacaaccatcagaatgaggatggtggttgggggacaca 540 ||||||||||||||| |||| |||||| ||||||||| ||||| |||||| | ||||| Sbjct: 476 acgtgagatatgccgctacatctacaacattcagaatgaagatgggggttggagtacaca 535 Query: 541 t 541 | Sbjct: 536 t 536
>dbj|AK072702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138M17, full insert sequence Length = 2529 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Plus Query: 481 acgtgagatatgccgtcacatttacaaccatcagaatgaggatggtggttgggggacaca 540 ||||||||||||||| |||| |||||| ||||||||| ||||| |||||| | ||||| Sbjct: 476 acgtgagatatgccgctacatctacaacattcagaatgaagatgggggttggagtacaca 535 Query: 541 t 541 | Sbjct: 536 t 536
>dbj|AB025343.1| Olea europaea OEW mRNA for lupeol synthase, complete cds Length = 2546 Score = 48.1 bits (24), Expect = 0.037 Identities = 39/44 (88%) Strand = Plus / Plus Query: 498 acatttacaaccatcagaatgaggatggtggttgggggacacat 541 |||| ||||| ||||||||||| ||||| |||||||||| |||| Sbjct: 546 acatatacaatcatcagaatgaagatggaggttgggggatacat 589
>dbj|AB058507.1| Costus speciosus CSOSC1 mRNA for cycloartenol synthase, complete cds Length = 2683 Score = 48.1 bits (24), Expect = 0.037 Identities = 39/44 (88%) Strand = Plus / Plus Query: 40 atgtggaggctgaaggtgtcggagggcggcagcccgtggctgcg 83 ||||||||||| ||| | ||||||||||| ||||||||||||| Sbjct: 207 atgtggaggctcaagatcgcggagggcggcggcccgtggctgcg 250
>ref|NM_106497.1| Arabidopsis thaliana catalytic AT1G78500 mRNA, complete cds Length = 2304 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 498 acatttacaaccatcagaatgaggatggtggttgggg 534 |||| |||||||||||||| || |||||||| ||||| Sbjct: 464 acatgtacaaccatcagaacgaagatggtgggtgggg 500
>ref|NM_117625.1| Arabidopsis thaliana catalytic/ lyase AT4G15370 mRNA, complete cds Length = 2280 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 498 acatttacaaccatcagaatgaggatggtggttgggg 534 |||| |||||||||||||| || |||||||| ||||| Sbjct: 464 acatgtacaaccatcagaacgaagatggtgggtgggg 500
>ref|NM_123006.1| Arabidopsis thaliana ATPEN3; catalytic AT5G36150 (ATPEN3) mRNA, complete cds Length = 2190 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 498 acatttacaaccatcagaatgaggatggtggttgggg 534 |||| |||||||||||||| || |||||||| ||||| Sbjct: 464 acatgtacaaccatcagaacgacgatggtggatgggg 500
>gb|AF216755.1|AF216755 Abies magnifica cycloartenol synthase (CAS1) mRNA, complete cds Length = 3057 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 506 aaccatcagaatgaggatggtggttgggg 534 |||||||||||||| |||||||| ||||| Sbjct: 968 aaccatcagaatgaagatggtggatgggg 996
>dbj|AK066900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092M18, full insert sequence Length = 3402 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 506 aaccatcagaatgaggatggtggttgggg 534 ||||||||||| ||||||||||| ||||| Sbjct: 658 aaccatcagaacgaggatggtggatgggg 686
>dbj|AK063066.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-G07, full insert sequence Length = 827 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 40 atgtggaggctgaaggtgtcggagggcgg 68 ||||||||||||||||| |||||||||| Sbjct: 133 atgtggaggctgaaggtcgcggagggcgg 161
>dbj|AB025345.1| Taraxacum officinale TRW mRNA for lupeol synthase, complete cds Length = 2452 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 498 acatttacaaccatcagaatgaggatggtggttgggg 534 |||| ||||| ||||||||||| ||||| |||||||| Sbjct: 490 acatatacaatcatcagaatgaagatggaggttgggg 526
>gb|AC118540.15| Mus musculus strain 129/SvJ clone mgs1-169d12 map 3, complete sequence Length = 191014 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 ttacaaccatcagaatgagg 521 |||||||||||||||||||| Sbjct: 30106 ttacaaccatcagaatgagg 30087
>gb|AC125483.4| Mus musculus BAC clone RP23-109I9 from chromosome 1, complete sequence Length = 201732 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 570 catgcttaaattatgcagccttaa 593 |||||| ||||||||||||||||| Sbjct: 23230 catgctgaaattatgcagccttaa 23253
>gb|AC146544.2| Gasterosteus aculeatus clone CH213-80N20, complete sequence Length = 181589 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 579 attatgcagccttaaggctt 598 |||||||||||||||||||| Sbjct: 101829 attatgcagccttaaggctt 101810
>gb|AC127283.2| Mus musculus BAC clone RP23-323E20 from chromosome 3, complete sequence Length = 210014 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 ttacaaccatcagaatgagg 521 |||||||||||||||||||| Sbjct: 58473 ttacaaccatcagaatgagg 58454
>gb|AC146543.2| Gasterosteus aculeatus clone CH213-67L12, complete sequence Length = 197879 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 579 attatgcagccttaaggctt 598 |||||||||||||||||||| Sbjct: 80248 attatgcagccttaaggctt 80229
>gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, complete sequence Length = 251855 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 570 catgcttaaattatgcagccttaa 593 |||||| ||||||||||||||||| Sbjct: 144339 catgctgaaattatgcagccttaa 144362
>gb|AC158532.2| Mus musculus BAC clone RP23-178C22 from chromosome 14, complete sequence Length = 188421 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 atcttcttatgcgcatgcag 238 |||||||||||||||||||| Sbjct: 34849 atcttcttatgcgcatgcag 34868
>gb|AC102609.7| Mus musculus, clone RP23-403I3, complete sequence Length = 208575 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ttatgttccttatgcctatg 421 |||||||||||||||||||| Sbjct: 117550 ttatgttccttatgcctatg 117569
>emb|AL359392.9| Human DNA sequence from clone RP11-332E3 on chromosome 13 Contains the 3' end of the LMO7 gene for LIM domain only 7(KIAA0858) and a novel gene, complete sequence Length = 150488 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 agtcacaggatcttcttatg 229 |||||||||||||||||||| Sbjct: 79887 agtcacaggatcttcttatg 79868
>emb|AL021808.2|HS24O18 Human DNA sequence from clone XXbac-24O18 on chromosome 6p21.31-22.2 Contains a zinc finger protein pseudogene, vomeronasal olfactory 1 receptor chromosome 6-1 pseudogene VN1R6-1P, the POM121L2 gene for POM121 membrane glycoprotein (rat homolog)-like 2, the PRSS16 gene for thymus serine protease 16, ESTs, STSs, GSSs and three CpG islands, complete sequence Length = 154066 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 ctatgtttatattctcttta 436 |||||||||||||||||||| Sbjct: 108455 ctatgtttatattctcttta 108474
>gb|AC141636.4| Mus musculus BAC clone RP23-471D17 from chromosome 19, complete sequence Length = 165424 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 ttatattctctttatatgtt 442 |||||||||||||||||||| Sbjct: 113491 ttatattctctttatatgtt 113472
>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence Length = 1332022 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 tttatattctctttatatgt 441 |||||||||||||||||||| Sbjct: 1043715 tttatattctctttatatgt 1043734
>dbj|AP000445.5| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-78H16, complete sequences Length = 125356 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 421 gtttatattctctttatatgttac 444 ||||| |||||||||||||||||| Sbjct: 60824 gtttaaattctctttatatgttac 60801
>dbj|AP001350.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-55A18, complete sequences Length = 142604 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 421 gtttatattctctttatatgttac 444 ||||| |||||||||||||||||| Sbjct: 141250 gtttaaattctctttatatgttac 141227
>emb|AL670959.8| Mouse DNA sequence from clone RP23-94L5 on chromosome 4, complete sequence Length = 262388 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 gcagaagtcacagaagaaat 315 |||||||||||||||||||| Sbjct: 201821 gcagaagtcacagaagaaat 201840
>dbj|AB055509.1| Betula platyphylla CASBPX1 mRNA for cycloartenol synthase, complete cds Length = 2460 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 503 tacaaccatcagaatgaggatggtggttgggg 534 ||||| ||||||||||| ||||| |||||||| Sbjct: 543 tacaatcatcagaatgaagatgggggttgggg 574
>dbj|AB058508.1| Costus speciosus CSOSC2 mRNA for multifunctional triterpene synthase, complete cds Length = 2487 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 503 tacaaccatcagaatgaggatggtggttgggg 534 |||||||| ||||| | ||||||||||||||| Sbjct: 545 tacaaccaccagaacgtggatggtggttgggg 576 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,213,282 Number of Sequences: 3902068 Number of extensions: 5213282 Number of successful extensions: 104091 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103846 Number of HSP's gapped (non-prelim): 237 length of query: 655 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 632 effective length of database: 17,143,297,704 effective search space: 10834564148928 effective search space used: 10834564148928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)