ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8o10 |
|---|---|
| Clone Library Name | barley_pub |
>PSD13_CHICK (P84169) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 106 bits (265), Expect = 4e-23 Identities = 58/148 (39%), Positives = 81/148 (54%) Frame = +3 Query: 117 AEFYKNALLYLAYTTVGXXXXXXXXXXXXXXXXXXXXGDNIYNFGELLAHPIIISLIGTK 296 A +YK+AL +L V G+ +YNFGELL HP++ SL T Sbjct: 170 ASYYKDALRFLGCIDVKDLPVSEQQERAFTLGLAGLLGEGVYNFGELLMHPVLESLRSTD 229 Query: 297 VEWVYHMLQAFNTGNLALYQELCGVHNAALSAQPALVQNEQKLLEKINILCLMEIIFSRP 476 +W+ L AFN+GN+ +Q L +A QP L NE LL+KI +LCLME+ F+RP Sbjct: 230 RQWLIDTLYAFNSGNVETFQAL----KSAWGQQPDLAANEALLLQKIQLLCLMEMTFTRP 285 Query: 477 SEDRTIPLSVIAKQTKLSTSEVECLLMK 560 + R + IAK K++ +EVE L+MK Sbjct: 286 ANHRQLTFEEIAKSAKVTVNEVELLVMK 313
>PSD13_HUMAN (Q9UNM6) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 105 bits (261), Expect = 1e-22 Identities = 56/148 (37%), Positives = 80/148 (54%) Frame = +3 Query: 117 AEFYKNALLYLAYTTVGXXXXXXXXXXXXXXXXXXXXGDNIYNFGELLAHPIIISLIGTK 296 A +YK+AL +L + G+ ++NFGELL HP++ SL T Sbjct: 170 ASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTD 229 Query: 297 VEWVYHMLQAFNTGNLALYQELCGVHNAALSAQPALVQNEQKLLEKINILCLMEIIFSRP 476 +W+ L AFN+GN+ +Q L A QP L NE +LL KI +LCLME+ F+RP Sbjct: 230 RQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRP 285 Query: 477 SEDRTIPLSVIAKQTKLSTSEVECLLMK 560 + R + IAK K++ +EVE L+MK Sbjct: 286 ANHRQLTFEEIAKSAKITVNEVELLVMK 313
>PSD13_BOVIN (Q5E964) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 105 bits (261), Expect = 1e-22 Identities = 56/148 (37%), Positives = 80/148 (54%) Frame = +3 Query: 117 AEFYKNALLYLAYTTVGXXXXXXXXXXXXXXXXXXXXGDNIYNFGELLAHPIIISLIGTK 296 A +YK+AL +L + GD ++NFGELL HP++ SL T Sbjct: 170 ASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGDGVFNFGELLMHPVLESLRDTD 229 Query: 297 VEWVYHMLQAFNTGNLALYQELCGVHNAALSAQPALVQNEQKLLEKINILCLMEIIFSRP 476 +W+ L AFN+GN+ +Q L A QP L NE +LL KI +LCLME+ F+RP Sbjct: 230 RQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRP 285 Query: 477 SEDRTIPLSVIAKQTKLSTSEVECLLMK 560 + R + IA+ K++ +EVE L+MK Sbjct: 286 ANHRQLTFEEIARSAKITVNEVELLVMK 313
>PSD13_MOUSE (Q9WVJ2) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 99.8 bits (247), Expect = 5e-21 Identities = 54/148 (36%), Positives = 79/148 (53%) Frame = +3 Query: 117 AEFYKNALLYLAYTTVGXXXXXXXXXXXXXXXXXXXXGDNIYNFGELLAHPIIISLIGTK 296 A +YK+AL +L + G+ ++NFGELL HP++ SL T Sbjct: 170 ASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTD 229 Query: 297 VEWVYHMLQAFNTGNLALYQELCGVHNAALSAQPALVQNEQKLLEKINILCLMEIIFSRP 476 +W+ L AFN+G + +Q L A QP L NE +LL KI +LCLME+ F+RP Sbjct: 230 RQWLIDTLYAFNSGAVDRFQTL----KCAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRP 285 Query: 477 SEDRTIPLSVIAKQTKLSTSEVECLLMK 560 + R + IAK K++ ++VE L+MK Sbjct: 286 ANHRQLTFEEIAKSAKITVNKVELLVMK 313
>RPN9_SCHPO (Q9US13) Probable 26S proteasome regulatory subunit rpn9| Length = 381 Score = 95.1 bits (235), Expect = 1e-19 Identities = 49/149 (32%), Positives = 83/149 (55%) Frame = +3 Query: 114 FAEFYKNALLYLAYTTVGXXXXXXXXXXXXXXXXXXXXGDNIYNFGELLAHPIIISLIGT 293 +A++Y++ LLYL+ + GD IYNFGELL HP+ L+GT Sbjct: 175 YAQYYRHCLLYLSCIDLDKCSHTELVERAVDLSVAAILGD-IYNFGELLLHPVFELLVGT 233 Query: 294 KVEWVYHMLQAFNTGNLALYQELCGVHNAALSAQPALVQNEQKLLEKINILCLMEIIFSR 473 + EW++ ++ A N G+L L++ L G ++ P L + L +KI ++ L+E++F Sbjct: 234 QHEWLHDLVIAMNVGDLPLFERLMG----QINKMPLLQSSVALLGQKIRLMALIELVFQL 289 Query: 474 PSEDRTIPLSVIAKQTKLSTSEVECLLMK 560 P RT+ IA+ T++ ++EVE L+M+ Sbjct: 290 PPNQRTLTFDTIARATRIPSNEVELLIMR 318
>RPN9_YEAST (Q04062) 26S proteasome regulatory subunit RPN9 (Proteasome| non-ATPase subunit 7) Length = 393 Score = 67.4 bits (163), Expect = 3e-11 Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 2/151 (1%) Frame = +3 Query: 114 FAEFYKNALLYLAYTTVGXXXXXXXXXXXXXXXXXXXX-GDNIYNFGELLAHPIIISLIG 290 F FY +LLYL+ GD IYNFGELL HPI+ +++ Sbjct: 185 FNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVN 244 Query: 291 -TKVEWVYHMLQAFNTGNLALYQELCGVHNAALSAQPALVQNEQKLLEKINILCLMEIIF 467 + +W++ +L A G+ + L V +S P L Q+E L +KI ++ L+E +F Sbjct: 245 DSNYDWLFQLLNALTVGDFDKFDSLIKVQ---ISKIPILAQHESFLRQKICLMTLIETVF 301 Query: 468 SRPSEDRTIPLSVIAKQTKLSTSEVECLLMK 560 + R + I+K T L VE L+M+ Sbjct: 302 VK--NIRMLSFEDISKATHLPKDNVEHLVMR 330
>T1SP_ECOLI (P17222) Type I restriction enzyme EcoprrI specificity protein (S| protein) (S.EcoprrI) Length = 401 Score = 30.4 bits (67), Expect = 3.6 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Frame = +3 Query: 264 HPIIISLI-GTKVEWVYHMLQAFNTGNLALYQELCGVHNAALSAQPALVQNEQKLLEKIN 440 H +++S++ G ++W +HML A N A+ SAQP L + Sbjct: 301 HAVVVSVMPGINIDWAFHMLTAMNLNQY-----------ASKSAQPGLAVGK-------- 341 Query: 441 ILCLMEIIFSRPSEDRTIPLSVIAKQTKLSTSEV 542 L E+ PS +R I ++ I + T+ + Sbjct: 342 ---LQELKLFVPSIERQIYIAAILDKFDTLTNSI 372 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,152,463 Number of Sequences: 219361 Number of extensions: 1536535 Number of successful extensions: 3326 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 3248 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3320 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
