>RPA9_YEAST (P32529) DNA-directed RNA polymerase I 13.7 kDa polypeptide (EC|
           2.7.7.6) (A12.2)
          Length = 125

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 356 INDVLILKGPCPNCGTENLSFYGTILSIESGGATNNVKCANC 481
           + D   +K  CP CG E ++++   L     GAT    C +C
Sbjct: 76  LKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSC 117

>MRH4_KLULA (Q6CWQ5) ATP-dependent RNA helicase MRH4, mitochondrial precursor|
           (EC 3.6.1.-)
          Length = 584

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 399 PQFGQGPFRIKTSFIMALVTTCAVTNIRGKAAKY-VNMKPKGSGNWNTLTSKPVSS 235
           P F + P+  K+ FI       AV+   G + K  +  KP+    WNT    PV +
Sbjct: 3   PVFSRFPYASKSGFISLASRGYAVSRNSGSSIKSNLRSKPRADTRWNTKAKPPVKN 58

>RS27_SULSO (Q97Z80) 30S ribosomal protein S27e|
          Length = 66

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 374 LKGPCPNCGTENLSFYGTILSIESGGATNNVKCANCKTVMVY 499
           L+  CPNCG E   F           AT  V+C +C T +VY
Sbjct: 17  LRVKCPNCGNEQTIF---------SHATFPVRCLSCGTELVY 49

>NAPA_PSEAE (Q9I4G3) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 829

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 272 PEPFGFIFTYFAALPLILVTAQVVTKAIINDVLILKGPCPNCGT 403
           P PF       A LP+++  + +VT+A +  ++  K PC  CGT
Sbjct: 8   PPPFA---AAAAGLPILVRASNLVTEADVTSLVWNKAPCRFCGT 48

>PRMA_AGRT5 (Q8UDP9) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 292

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
 Frame = +2

Query: 62  DELKLRLKQDGSDIVTEGPRCSLRSRKVY------SDLTVDYLKMFLLNVPATIVALGLF 223
           D L+ R  ++  D+ T     ++  RK+       +D+    +K+   NV    +  G+ 
Sbjct: 145 DVLRARKVRNALDLGTGSGVLAIAVRKMRPIPVLATDIDPIAVKVAKENVRLNGIVSGMA 204

Query: 224 FFIDELTGFEVNVFQFPEPFGFIFTYFAALPLILVTAQVVTKAIINDVLILKG 382
             ++   GF  + F+   PF  I     A PLI +  Q+VT       +IL G
Sbjct: 205 --LETAPGFHSDAFRKHGPFDLIIANILARPLIKMAPQLVTHLAPGGTVILSG 255

>RS27_SULTO (Q973F9) 30S ribosomal protein S27e|
          Length = 66

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 386 CPNCGTENLSFYGTILSIESGGATNNVKCANCKTVMVY 499
           CPNCG E   F           AT  V+C +C T +VY
Sbjct: 21  CPNCGNEQTVF---------SHATFPVRCLSCGTQLVY 49

>RPA12_MOUSE (Q791N7) DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)|
           (Nuclear RNA polymerase I small specific subunit Rpa12)
           (Zinc ribbon domain-containing protein 1)
          Length = 123

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = +2

Query: 374 LKGP-----CPNCGTENLSFYGTILSIESGGATNNVKCANCK 484
           L+GP     CP CG E ++++   +     G T    C NCK
Sbjct: 75  LQGPVIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCINCK 116

>CID14_SCHPO (Q9UTN3) Topoisomerase 1-related protein cid14 (Caffeine-induced|
           death protein 14)
          Length = 684

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 12/115 (10%)
 Frame = +2

Query: 65  ELKLRLKQDGSDIVTEGPRCSLRSRKVYSDLTVDYLKMFLLNVPATIVALG---LFFFID 235
           E KL L     D+V   P    R  K    +   +LK   L     ++      +  F+D
Sbjct: 289 ETKLYLPTSDLDLVIISPEHHYRGTKKDMFVLAHHLKKLKLASEVQVITTANVPIIKFVD 348

Query: 236 ELTGFEVNVFQFPEPFG---------FIFTYFAALPLILVTAQVVTKAIINDVLI 373
            LT   V++  F +P G         F+  Y A  PL+++    +    +N+V +
Sbjct: 349 PLTKVHVDI-SFNQPGGLKTCLVVNGFMKKYPALRPLVIIIKHFLNMRALNEVFL 402

>LGT_FRATT (Q5NFK6) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 268

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 206 VALGLFFFIDELTGFEVNVFQFPEP-FGFIFTYFAALPLILVTAQVVTKAIINDVLILK 379
           + LGLF F+     F    F+ P+P +G+IF  +  +  IL    ++  A+I   + +K
Sbjct: 201 LVLGLFMFLYGCARFICEFFRQPDPQYGYIFFNWMTMGQILSIPMILLGAVILIAVFIK 259

>PLLP_RAT (P47987) Plasmolipin (Plasma membrane proteolipid)|
          Length = 182

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = +2

Query: 218 LFFFIDELTGFEVNVFQFPEPFGFIFTYFAALPLILVTAQVVTKAIINDVLILKGPCPNC 397
           + FFI  L    + ++  P P   +  +F A  ++ +TA V   A + D+  L+G  P  
Sbjct: 81  IVFFIIYLFQLHMKLYMVPWPL-VLLVFFVAATVLYITAFVACAAAV-DLTSLRGSRPYN 138

Query: 398 GTENLSFYGTILSIESG 448
                SF+  ++ I  G
Sbjct: 139 QRSAASFFACLVMIAYG 155

>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 27/116 (23%), Positives = 49/116 (42%)
 Frame = +2

Query: 20  AYIAGNPIMSDVEFDELKLRLKQDGSDIVTEGPRCSLRSRKVYSDLTVDYLKMFLLNVPA 199
           +++AG P+ S  E DE           ++ EG R     R+  S +   +    L +VP+
Sbjct: 72  SFLAGRPLTSRPELDE-----------VLDEGARLDALMRQ--SGILKGHEMAQLTDVPS 118

Query: 200 TIVALGLFFFIDELTGFEVNVFQFPEPFGFIFTYFAALPLILVTAQVVTKAIINDV 367
           ++V  G         G  V++++  E FG          L+L  AQ+   A++  +
Sbjct: 119 SVVLRG---------GGRVHIYRSAEIFG----------LVLFPAQIANSAVVQSL 155

>RPA12_MACMU (Q5TM50) DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)|
           (Nuclear RNA polymerase I small specific subunit Rpa12)
           (Zinc ribbon domain-containing protein 1)
          Length = 126

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 386 CPNCGTENLSFYGTILSIESGGATNNVKCANCK 484
           CP CG E ++++   +     G T    C NCK
Sbjct: 87  CPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119

>RPA12_HUMAN (Q9P1U0) DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)|
           (Nuclear RNA polymerase I small specific subunit Rpa12)
           (Zinc ribbon domain-containing protein 1)
          Length = 126

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 386 CPNCGTENLSFYGTILSIESGGATNNVKCANCK 484
           CP CG E ++++   +     G T    C NCK
Sbjct: 87  CPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,729,626
Number of Sequences: 219361
Number of extensions: 1274744
Number of successful extensions: 3681
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3679
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)