Clone Name | bags8o07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470484.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1318 Score = 246 bits (124), Expect = 6e-62 Identities = 274/324 (84%) Strand = Plus / Plus Query: 2 ctgctggaagcctccatggcctacatcgccggcaaccccatcatgtccgacgtcgagttc 61 ||||| ||||||||||||||||| |||||||||||||||||||| |||| || ||| Sbjct: 500 ctgctcgaagcctccatggcctatgctgccggcaaccccatcatgtctgacgctgaattc 559 Query: 62 gatgaactcaagctcagactcaagcaagatggaagcgacatagtgacggaaggccccagg 121 || ||||||| |||||| | ||| |||| ||||| ||||| || || ||||| |||||| Sbjct: 560 gaccaactcaaactcagattgaagaaagacggaagtgacattgtcaccgaaggtcccagg 619 Query: 122 tgcagtctacggagtcggaaggtttacagcgacctcaccgttgactacttgaagatgttc 181 ||||||||||| || || ||||| ||||| || | |||||||||||| | ||||||||| Sbjct: 620 tgcagtctacgcagccgaaaggtgtacagtgatttgaccgttgactacctaaagatgttc 679 Query: 182 ctgctgaatgttccagcgactattgttgctctaggactgttcttcttcattgatgagctg 241 ||||| ||||||||||| |||| | ||||||||||||||||||||||||| |||||| || Sbjct: 680 ctgctaaatgttccagcaactactcttgctctaggactgttcttcttcatcgatgagttg 739 Query: 242 actggctttgaggtcaatgtattccagtttccagagccctttggcttcatattcacatat 301 |||||||||||| |||| |||||||| | |||||||| || || ||||| ||||||| Sbjct: 740 actggctttgagatcaacatattccagctgccagagcctttcggtttcattttcacatgg 799 Query: 302 tttgccgctttgcctctgatattg 325 ||||| ||||||||||| |||||| Sbjct: 800 tttgctgctttgcctctaatattg 823 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 366 tcttaatcctgaagggaccttgtccgaattgcggtactgaaaatctttccttctacggga 425 |||||||||| ||||| || ||||||||||| || ||||||| |||||||||| ||||| Sbjct: 864 tcttaatcctcaaggggccatgtccgaattgtggcgctgaaaacctttccttcttcggga 923 Query: 426 caatactgtc 435 | || ||||| Sbjct: 924 ctatcctgtc 933
>dbj|AK098951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052N16, full insert sequence Length = 1342 Score = 246 bits (124), Expect = 6e-62 Identities = 274/324 (84%) Strand = Plus / Plus Query: 2 ctgctggaagcctccatggcctacatcgccggcaaccccatcatgtccgacgtcgagttc 61 ||||| ||||||||||||||||| |||||||||||||||||||| |||| || ||| Sbjct: 524 ctgctcgaagcctccatggcctatgctgccggcaaccccatcatgtctgacgctgaattc 583 Query: 62 gatgaactcaagctcagactcaagcaagatggaagcgacatagtgacggaaggccccagg 121 || ||||||| |||||| | ||| |||| ||||| ||||| || || ||||| |||||| Sbjct: 584 gaccaactcaaactcagattgaagaaagacggaagtgacattgtcaccgaaggtcccagg 643 Query: 122 tgcagtctacggagtcggaaggtttacagcgacctcaccgttgactacttgaagatgttc 181 ||||||||||| || || ||||| ||||| || | |||||||||||| | ||||||||| Sbjct: 644 tgcagtctacgcagccgaaaggtgtacagtgatttgaccgttgactacctaaagatgttc 703 Query: 182 ctgctgaatgttccagcgactattgttgctctaggactgttcttcttcattgatgagctg 241 ||||| ||||||||||| |||| | ||||||||||||||||||||||||| |||||| || Sbjct: 704 ctgctaaatgttccagcaactactcttgctctaggactgttcttcttcatcgatgagttg 763 Query: 242 actggctttgaggtcaatgtattccagtttccagagccctttggcttcatattcacatat 301 |||||||||||| |||| |||||||| | |||||||| || || ||||| ||||||| Sbjct: 764 actggctttgagatcaacatattccagctgccagagcctttcggtttcattttcacatgg 823 Query: 302 tttgccgctttgcctctgatattg 325 ||||| ||||||||||| |||||| Sbjct: 824 tttgctgctttgcctctaatattg 847 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 366 tcttaatcctgaagggaccttgtccgaattgcggtactgaaaatctttccttctacggga 425 |||||||||| ||||| || ||||||||||| || ||||||| |||||||||| ||||| Sbjct: 888 tcttaatcctcaaggggccatgtccgaattgtggcgctgaaaacctttccttcttcggga 947 Query: 426 caatactgtc 435 | || ||||| Sbjct: 948 ctatcctgtc 957
>dbj|AK062137.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F08, full insert sequence Length = 1358 Score = 246 bits (124), Expect = 6e-62 Identities = 274/324 (84%) Strand = Plus / Plus Query: 2 ctgctggaagcctccatggcctacatcgccggcaaccccatcatgtccgacgtcgagttc 61 ||||| ||||||||||||||||| |||||||||||||||||||| |||| || ||| Sbjct: 521 ctgctcgaagcctccatggcctatgctgccggcaaccccatcatgtctgacgctgaattc 580 Query: 62 gatgaactcaagctcagactcaagcaagatggaagcgacatagtgacggaaggccccagg 121 || ||||||| |||||| | ||| |||| ||||| ||||| || || ||||| |||||| Sbjct: 581 gaccaactcaaactcagattgaagaaagacggaagtgacattgtcaccgaaggtcccagg 640 Query: 122 tgcagtctacggagtcggaaggtttacagcgacctcaccgttgactacttgaagatgttc 181 ||||||||||| || || ||||| ||||| || | |||||||||||| | ||||||||| Sbjct: 641 tgcagtctacgcagccgaaaggtgtacagtgatttgaccgttgactacctaaagatgttc 700 Query: 182 ctgctgaatgttccagcgactattgttgctctaggactgttcttcttcattgatgagctg 241 ||||| ||||||||||| |||| | ||||||||||||||||||||||||| |||||| || Sbjct: 701 ctgctaaatgttccagcaactactcttgctctaggactgttcttcttcatcgatgagttg 760 Query: 242 actggctttgaggtcaatgtattccagtttccagagccctttggcttcatattcacatat 301 |||||||||||| |||| |||||||| | |||||||| || || ||||| ||||||| Sbjct: 761 actggctttgagatcaacatattccagctgccagagcctttcggtttcatcttcacatgg 820 Query: 302 tttgccgctttgcctctgatattg 325 ||||| ||||||||||| |||||| Sbjct: 821 tttgctgctttgcctctaatattg 844 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 366 tcttaatcctgaagggaccttgtccgaattgcggtactgaaaatctttccttctacggga 425 |||||||||| ||||| || ||||||||||| || ||||||| |||||||||| ||||| Sbjct: 885 tcttaatcctcaaggggccatgtccgaattgtggcgctgaaaacctttccttcttcggga 944 Query: 426 caatactgtc 435 | || ||||| Sbjct: 945 ctatcctgtc 954
>gb|AY104225.1| Zea mays PCO144800 mRNA sequence Length = 939 Score = 115 bits (58), Expect = 2e-22 Identities = 172/210 (81%) Strand = Plus / Plus Query: 116 cccaggtgcagtctacggagtcggaaggtttacagcgacctcaccgttgactacttgaag 175 ||||||||||| ||| ||| || ||||| ||||| ||| | | ||||||||| | ||| Sbjct: 152 cccaggtgcagcctaaggactcataaggtgtacagtgacttgaatgttgactacctaaag 211 Query: 176 atgttcctgctgaatgttccagcgactattgttgctctaggactgttcttcttcattgat 235 |||||||| || ||||||||||| || | || ||||| ||||||||||| ||||||||| Sbjct: 212 atgttcctcctaaatgttccagccaccaccgtagctctgggactgttctttttcattgat 271 Query: 236 gagctgactggctttgaggtcaatgtattccagtttccagagccctttggcttcatattc 295 || ||||||| |||||| ||||||| |||||| | |||||||| || || ||||| ||| Sbjct: 272 gaattgactggttttgagatcaatgtgttccagctgccagagcctttcggattcattttc 331 Query: 296 acatattttgccgctttgcctctgatattg 325 |||| ||||| |||||||| || |||||| Sbjct: 332 acatggtttgctgctttgcccctaatattg 361 Score = 83.8 bits (42), Expect = 5e-13 Identities = 129/158 (81%) Strand = Plus / Plus Query: 368 ttaatcctgaagggaccttgtccgaattgcggtactgaaaatctttccttctacgggaca 427 |||||||| ||||| || ||||| ||||| ||||||||||| |||||||||| ||||| Sbjct: 404 ttaatccttaaggggccatgtcctaattgtggtactgaaaacctttccttctttgggact 463 Query: 428 atactgtcgatcgagagcggcggtgcgacgaacaacgtgaagtgcgcaaattgcaaaacc 487 |||||||| || || |||||| | || ||||| ||||| || |||||||||| ||| Sbjct: 464 atactgtcagtctccagtggcggtacaacaaacaaagtgaaatgtgcaaattgcagtacc 523 Query: 488 gtgatggtatacgactcaaaaactcggctgatcacact 525 | | ||| ||| ||||||||| ||||| |||||||||| Sbjct: 524 gagctggaatatgactcaaaatctcgggtgatcacact 561
>gb|AY104292.1| Zea mays PCO099333 mRNA sequence Length = 1025 Score = 101 bits (51), Expect = 2e-18 Identities = 180/223 (80%) Strand = Plus / Plus Query: 6 tggaagcctccatggcctacatcgccggcaaccccatcatgtccgacgtcgagttcgatg 65 |||||||| ||||||| || || | ||||||||||||||| | || | || |||||| Sbjct: 197 tggaagccgccatggcgtatgtctcgggcaaccccatcatgacggatgatgaattcgatc 256 Query: 66 aactcaagctcagactcaagcaagatggaagcgacatagtgacggaaggccccaggtgca 125 |||| ||||| ||||| ||| |||| ||||||||||| || |||||| || || |||| Sbjct: 257 aactaaagctgagactaaagaaagaaggaagcgacattgtacaggaaggtccaagatgca 316 Query: 126 gtctacggagtcggaaggtttacagcgacctcaccgttgactacttgaagatgttcctgc 185 | ||||||||||| ||||| ||||| ||| | || |||||||||||||||||||| || | Sbjct: 317 gcctacggagtcgaaaggtctacagtgacttgactgttgactacttgaagatgttgctcc 376 Query: 186 tgaatgttccagcgactattgttgctctaggactgttcttctt 228 | |||||||| || || |||| ||||| | ||| |||||||| Sbjct: 377 taaatgttcccgcagctgttgtagctctggcactattcttctt 419
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 79.8 bits (40), Expect = 8e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 158 accgttgactacttgaagatgttcctgctgaatgttccagcgactattgttgctctagga 217 |||||||||||| | |||||||||||||| ||||||||||| |||| | ||||||||||| Sbjct: 35877902 accgttgactacctaaagatgttcctgctaaatgttccagcaactactcttgctctagga 35877843 Query: 218 ctgt 221 |||| Sbjct: 35877842 ctgt 35877839 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 2 ctgctggaagcctccatggcctacatcgccggcaaccccatcatgtccgacgtcgagttc 61 ||||| ||||||||||||||||| |||||||||||||||||||| |||| || ||| Sbjct: 35878464 ctgctcgaagcctccatggcctatgctgccggcaaccccatcatgtctgacgctgaattc 35878405 Query: 62 gatgaactcaagctcaga 79 || ||||||| |||||| Sbjct: 35878404 gaccaactcaaactcaga 35878387 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 220 gttcttcttcattgatgagctgactggctttgaggtcaatgtattccag 268 |||||||||||| |||||| |||||||||||||| |||| |||||||| Sbjct: 35877652 gttcttcttcatcgatgagttgactggctttgagatcaacatattccag 35877604 Score = 44.1 bits (22), Expect = 0.47 Identities = 40/46 (86%) Strand = Plus / Minus Query: 87 aagatggaagcgacatagtgacggaaggccccaggtgcagtctacg 132 |||| ||||| ||||| || || ||||| ||||||||||||||||| Sbjct: 35878231 aagacggaagtgacattgtcaccgaaggtcccaggtgcagtctacg 35878186 Score = 44.1 bits (22), Expect = 0.47 Identities = 46/54 (85%) Strand = Plus / Minus Query: 272 ccagagccctttggcttcatattcacatattttgccgctttgcctctgatattg 325 |||||||| || || ||||| ||||||| ||||| ||||||||||| |||||| Sbjct: 35877510 ccagagcctttcggtttcattttcacatggtttgctgctttgcctctaatattg 35877457 Score = 44.1 bits (22), Expect = 0.47 Identities = 43/50 (86%) Strand = Plus / Minus Query: 386 tgtccgaattgcggtactgaaaatctttccttctacgggacaatactgtc 435 ||||||||||| || ||||||| |||||||||| |||||| || ||||| Sbjct: 35877286 tgtccgaattgtggcgctgaaaacctttccttcttcgggactatcctgtc 35877237
>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete sequence Length = 145115 Score = 79.8 bits (40), Expect = 8e-12 Identities = 58/64 (90%) Strand = Plus / Plus Query: 158 accgttgactacttgaagatgttcctgctgaatgttccagcgactattgttgctctagga 217 |||||||||||| | |||||||||||||| ||||||||||| |||| | ||||||||||| Sbjct: 83223 accgttgactacctaaagatgttcctgctaaatgttccagcaactactcttgctctagga 83282 Query: 218 ctgt 221 |||| Sbjct: 83283 ctgt 83286 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 2 ctgctggaagcctccatggcctacatcgccggcaaccccatcatgtccgacgtcgagttc 61 ||||| ||||||||||||||||| |||||||||||||||||||| |||| || ||| Sbjct: 82661 ctgctcgaagcctccatggcctatgctgccggcaaccccatcatgtctgacgctgaattc 82720 Query: 62 gatgaactcaagctcaga 79 || ||||||| |||||| Sbjct: 82721 gaccaactcaaactcaga 82738 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 220 gttcttcttcattgatgagctgactggctttgaggtcaatgtattccag 268 |||||||||||| |||||| |||||||||||||| |||| |||||||| Sbjct: 83473 gttcttcttcatcgatgagttgactggctttgagatcaacatattccag 83521 Score = 44.1 bits (22), Expect = 0.47 Identities = 43/50 (86%) Strand = Plus / Plus Query: 386 tgtccgaattgcggtactgaaaatctttccttctacgggacaatactgtc 435 ||||||||||| || ||||||| |||||||||| |||||| || ||||| Sbjct: 83839 tgtccgaattgtggcgctgaaaacctttccttcttcgggactatcctgtc 83888 Score = 44.1 bits (22), Expect = 0.47 Identities = 46/54 (85%) Strand = Plus / Plus Query: 272 ccagagccctttggcttcatattcacatattttgccgctttgcctctgatattg 325 |||||||| || || ||||| ||||||| ||||| ||||||||||| |||||| Sbjct: 83615 ccagagcctttcggtttcattttcacatggtttgctgctttgcctctaatattg 83668 Score = 44.1 bits (22), Expect = 0.47 Identities = 40/46 (86%) Strand = Plus / Plus Query: 87 aagatggaagcgacatagtgacggaaggccccaggtgcagtctacg 132 |||| ||||| ||||| || || ||||| ||||||||||||||||| Sbjct: 82894 aagacggaagtgacattgtcaccgaaggtcccaggtgcagtctacg 82939
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 79.8 bits (40), Expect = 8e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 158 accgttgactacttgaagatgttcctgctgaatgttccagcgactattgttgctctagga 217 |||||||||||| | |||||||||||||| ||||||||||| |||| | ||||||||||| Sbjct: 35968032 accgttgactacctaaagatgttcctgctaaatgttccagcaactactcttgctctagga 35967973 Query: 218 ctgt 221 |||| Sbjct: 35967972 ctgt 35967969 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 2 ctgctggaagcctccatggcctacatcgccggcaaccccatcatgtccgacgtcgagttc 61 ||||| ||||||||||||||||| |||||||||||||||||||| |||| || ||| Sbjct: 35968594 ctgctcgaagcctccatggcctatgctgccggcaaccccatcatgtctgacgctgaattc 35968535 Query: 62 gatgaactcaagctcaga 79 || ||||||| |||||| Sbjct: 35968534 gaccaactcaaactcaga 35968517 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 220 gttcttcttcattgatgagctgactggctttgaggtcaatgtattccag 268 |||||||||||| |||||| |||||||||||||| |||| |||||||| Sbjct: 35967782 gttcttcttcatcgatgagttgactggctttgagatcaacatattccag 35967734 Score = 44.1 bits (22), Expect = 0.47 Identities = 40/46 (86%) Strand = Plus / Minus Query: 87 aagatggaagcgacatagtgacggaaggccccaggtgcagtctacg 132 |||| ||||| ||||| || || ||||| ||||||||||||||||| Sbjct: 35968361 aagacggaagtgacattgtcaccgaaggtcccaggtgcagtctacg 35968316 Score = 44.1 bits (22), Expect = 0.47 Identities = 46/54 (85%) Strand = Plus / Minus Query: 272 ccagagccctttggcttcatattcacatattttgccgctttgcctctgatattg 325 |||||||| || || ||||| ||||||| ||||| ||||||||||| |||||| Sbjct: 35967640 ccagagcctttcggtttcattttcacatggtttgctgctttgcctctaatattg 35967587 Score = 44.1 bits (22), Expect = 0.47 Identities = 43/50 (86%) Strand = Plus / Minus Query: 386 tgtccgaattgcggtactgaaaatctttccttctacgggacaatactgtc 435 ||||||||||| || ||||||| |||||||||| |||||| || ||||| Sbjct: 35967416 tgtccgaattgtggcgctgaaaacctttccttcttcgggactatcctgtc 35967367
>ref|XM_507596.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1191_A10.128 mRNA Length = 1442 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 122 tgcagtctacggagtcggaaggtttacagcgacctcaccgttgactacttgaagatgttc 181 |||||||| || ||||| ||||| ||||| ||| | || || || ||||| ||||||||| Sbjct: 732 tgcagtcttcgaagtcgaaaggtctacagtgacttgactgtcgattacttcaagatgttc 791 Query: 182 ctgctgaatgttccagc 198 ||||| ||||||||||| Sbjct: 792 ctgctaaatgttccagc 808 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 375 tgaagggaccttgtccgaattgcggtactgaaaatctttccttctacgggacaatactgt 434 |||||||||| || ||||| || || | ||||||||||||||||| ||||| ||||||| Sbjct: 988 tgaagggaccgtgcccgaactgtggcaatgaaaatctttccttctttgggactatactgt 1047 Query: 435 c 435 | Sbjct: 1048 c 1048
>ref|XM_483430.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1442 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 122 tgcagtctacggagtcggaaggtttacagcgacctcaccgttgactacttgaagatgttc 181 |||||||| || ||||| ||||| ||||| ||| | || || || ||||| ||||||||| Sbjct: 732 tgcagtcttcgaagtcgaaaggtctacagtgacttgactgtcgattacttcaagatgttc 791 Query: 182 ctgctgaatgttccagc 198 ||||| ||||||||||| Sbjct: 792 ctgctaaatgttccagc 808 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 375 tgaagggaccttgtccgaattgcggtactgaaaatctttccttctacgggacaatactgt 434 |||||||||| || ||||| || || | ||||||||||||||||| ||||| ||||||| Sbjct: 988 tgaagggaccgtgcccgaactgtggcaatgaaaatctttccttctttgggactatactgt 1047 Query: 435 c 435 | Sbjct: 1048 c 1048
>ref|XM_507301.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1191_A10.128 mRNA Length = 1445 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 122 tgcagtctacggagtcggaaggtttacagcgacctcaccgttgactacttgaagatgttc 181 |||||||| || ||||| ||||| ||||| ||| | || || || ||||| ||||||||| Sbjct: 732 tgcagtcttcgaagtcgaaaggtctacagtgacttgactgtcgattacttcaagatgttc 791 Query: 182 ctgctgaatgttccagc 198 ||||| ||||||||||| Sbjct: 792 ctgctaaatgttccagc 808 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 375 tgaagggaccttgtccgaattgcggtactgaaaatctttccttctacgggacaatactgt 434 |||||||||| || ||||| || || | ||||||||||||||||| ||||| ||||||| Sbjct: 988 tgaagggaccgtgcccgaactgtggcaatgaaaatctttccttctttgggactatactgt 1047 Query: 435 c 435 | Sbjct: 1048 c 1048
>dbj|AK070382.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052D06, full insert sequence Length = 1445 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 122 tgcagtctacggagtcggaaggtttacagcgacctcaccgttgactacttgaagatgttc 181 |||||||| || ||||| ||||| ||||| ||| | || || || ||||| ||||||||| Sbjct: 732 tgcagtcttcgaagtcgaaaggtctacagtgacttgactgtcgattacttcaagatgttc 791 Query: 182 ctgctgaatgttccagc 198 ||||| ||||||||||| Sbjct: 792 ctgctaaatgttccagc 808 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 375 tgaagggaccttgtccgaattgcggtactgaaaatctttccttctacgggacaatactgt 434 |||||||||| || ||||| || || | ||||||||||||||||| ||||| ||||||| Sbjct: 988 tgaagggaccgtgcccgaactgtggcaatgaaaatctttccttctttgggactatactgt 1047 Query: 435 c 435 | Sbjct: 1048 c 1048
>gb|BT012947.1| Lycopersicon esculentum clone 114116R, mRNA sequence Length = 1252 Score = 50.1 bits (25), Expect = 0.008 Identities = 100/125 (80%) Strand = Plus / Plus Query: 122 tgcagtctacggagtcggaaggtttacagcgacctcaccgttgactacttgaagatgttc 181 |||||||| || ||| | ||||||||||| ||||| ||||| ||| ||||||||||| Sbjct: 601 tgcagtctccgtagtagaaaggtttacagtgacctttatgttgattacctgaagatgttc 660 Query: 182 ctgctgaatgttccagcgactattgttgctctaggactgttcttcttcattgatgagctg 241 |||| |||||||| || || ||||||| || ||| |||| |||||| | ||||| || Sbjct: 661 ttgctaaatgttcccgctgctgttgttgcgcttggattgtttttcttcctcgatgatttg 720 Query: 242 actgg 246 ||||| Sbjct: 721 actgg 725
>dbj|AK121104.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069O17, full insert sequence Length = 3855 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 375 tgaagggaccttgtccgaattgcggtactgaaaatctttccttctacgggacaatactgt 434 |||||||||| || ||||| || || | ||||||||||||||||| ||||| ||||||| Sbjct: 3430 tgaagggaccgtgcccgaactgtggcaatgaaaatctttccttctttgggactatactgt 3489 Query: 435 c 435 | Sbjct: 3490 c 3490 Score = 48.1 bits (24), Expect = 0.030 Identities = 30/32 (93%) Strand = Plus / Plus Query: 167 tacttgaagatgttcctgctgaatgttccagc 198 ||||| |||||||||||||| ||||||||||| Sbjct: 3219 tacttcaagatgttcctgctaaatgttccagc 3250
>dbj|AK104593.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B08, full insert sequence Length = 1378 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 375 tgaagggaccttgtccgaattgcggtactgaaaatctttccttctacgggacaatactgt 434 |||||||||| || ||||| || || | ||||||||||||||||| ||||| ||||||| Sbjct: 924 tgaagggaccgtgcccgaactgtggcaatgaaaatctttccttctttgggactatactgt 983 Query: 435 c 435 | Sbjct: 984 c 984 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 122 tgcagtctacggagtcggaaggtttacagcgacctcaccgttgactacttgaagatgttc 181 |||||||| || ||||| ||||| ||||| ||| | || || || ||||| ||||||||| Sbjct: 668 tgcagtcttcgaagtcgaaaggtctacagtgacttgactgtcgattacttcaagatgttc 727 Query: 182 ctgctgaatgttccagc 198 || || ||||||||||| Sbjct: 728 ctactaaatgttccagc 744
>dbj|AK061736.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D09, full insert sequence Length = 1378 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 375 tgaagggaccttgtccgaattgcggtactgaaaatctttccttctacgggacaatactgt 434 |||||||||| || ||||| || || | ||||||||||||||||| ||||| ||||||| Sbjct: 924 tgaagggaccgtgcccgaactgtggcaatgaaaatctttccttctttgggactatactgt 983 Query: 435 c 435 | Sbjct: 984 c 984 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 122 tgcagtctacggagtcggaaggtttacagcgacctcaccgttgactacttgaagatgttc 181 |||||||| || ||||| ||||| ||||| ||| | || || || ||||| ||||||||| Sbjct: 668 tgcagtcttcgaagtcgaaaggtctacagtgacttgactgtcgattacttcaagatgttc 727 Query: 182 ctgctgaatgttccagc 198 || || ||||||||||| Sbjct: 728 ctactaaatgttccagc 744
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 48.1 bits (24), Expect = 0.030 Identities = 30/32 (93%) Strand = Plus / Plus Query: 167 tacttgaagatgttcctgctgaatgttccagc 198 ||||| |||||||||||||| ||||||||||| Sbjct: 26173510 tacttcaagatgttcctgctaaatgttccagc 26173541 Score = 44.1 bits (22), Expect = 0.47 Identities = 49/58 (84%) Strand = Plus / Plus Query: 378 agggaccttgtccgaattgcggtactgaaaatctttccttctacgggacaatactgtc 435 ||||||| || ||||| || || | ||||||||||||||||| ||||| |||||||| Sbjct: 26176650 agggaccgtgcccgaactgtggcaatgaaaatctttccttctttgggactatactgtc 26176707 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 403 tgaaaatctttccttctacgggacaatactgtc 435 ||||||||||||||||| ||||| |||||||| Sbjct: 13095018 tgaaaatctttccttctttgggactatactgtc 13094986 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 167 tacttgaagatgttcctgctgaatgttccagc 198 ||||| ||||||||| |||| ||||||||||| Sbjct: 13100088 tacttcaagatgttcatgctaaatgttccagc 13100057
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 48.1 bits (24), Expect = 0.030 Identities = 30/32 (93%) Strand = Plus / Plus Query: 167 tacttgaagatgttcctgctgaatgttccagc 198 ||||| |||||||||||||| ||||||||||| Sbjct: 117441 tacttcaagatgttcctgctaaatgttccagc 117472 Score = 44.1 bits (22), Expect = 0.47 Identities = 49/58 (84%) Strand = Plus / Plus Query: 378 agggaccttgtccgaattgcggtactgaaaatctttccttctacgggacaatactgtc 435 ||||||| || ||||| || || | ||||||||||||||||| ||||| |||||||| Sbjct: 120581 agggaccgtgcccgaactgtggcaatgaaaatctttccttctttgggactatactgtc 120638
>dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_E06 Length = 112241 Score = 48.1 bits (24), Expect = 0.030 Identities = 30/32 (93%) Strand = Plus / Plus Query: 167 tacttgaagatgttcctgctgaatgttccagc 198 ||||| |||||||||||||| ||||||||||| Sbjct: 6435 tacttcaagatgttcctgctaaatgttccagc 6466 Score = 44.1 bits (22), Expect = 0.47 Identities = 49/58 (84%) Strand = Plus / Plus Query: 378 agggaccttgtccgaattgcggtactgaaaatctttccttctacgggacaatactgtc 435 ||||||| || ||||| || || | ||||||||||||||||| ||||| |||||||| Sbjct: 9575 agggaccgtgcccgaactgtggcaatgaaaatctttccttctttgggactatactgtc 9632
>gb|AC105981.10| Mus musculus chromosome 8, clone RP24-210I22, complete sequence Length = 167656 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gctgctggaagcctccatggc 21 ||||||||||||||||||||| Sbjct: 15221 gctgctggaagcctccatggc 15241
>ref|XM_481498.1| Oryza sativa (japonica cultivar-group), mRNA Length = 612 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 403 tgaaaatctttccttctacgggacaatactgtc 435 ||||||||||||||||| ||||| |||||||| Sbjct: 468 tgaaaatctttccttctttgggactatactgtc 500 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 167 tacttgaagatgttcctgctgaatgttccagc 198 ||||| ||||||||| |||| ||||||||||| Sbjct: 229 tacttcaagatgttcatgctaaatgttccagc 260
>gb|AY360387.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0003M24, complete sequence Length = 150085 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 403 tgaaaatctttccttctacgggacaatactgtc 435 ||||||||||||||||| ||||| |||||||| Sbjct: 88433 tgaaaatctttccttctttgggactatactgtc 88465 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 167 tacttgaagatgttcctgctgaatgttccagc 198 ||||| ||||||||| |||| ||||||||||| Sbjct: 83433 tacttcaagatgttcatgctaaatgttccagc 83464
>gb|AC102819.5| Mus musculus chromosome 8, clone RP23-117H21, complete sequence Length = 191116 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gctgctggaagcctccatggc 21 ||||||||||||||||||||| Sbjct: 166302 gctgctggaagcctccatggc 166322
>dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone: B1100F03 Length = 139217 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 403 tgaaaatctttccttctacgggacaatactgtc 435 ||||||||||||||||| ||||| |||||||| Sbjct: 75538 tgaaaatctttccttctttgggactatactgtc 75506 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 167 tacttgaagatgttcctgctgaatgttccagc 198 ||||| ||||||||| |||| ||||||||||| Sbjct: 80608 tacttcaagatgttcatgctaaatgttccagc 80577
>ref|NM_179091.1| Arabidopsis thaliana unknown protein AT4G22890 transcript variant AT4G22890.2 mRNA, complete cds Length = 1092 Score = 40.1 bits (20), Expect = 7.3 Identities = 38/44 (86%) Strand = Plus / Plus Query: 186 tgaatgttccagcgactattgttgctctaggactgttcttcttc 229 ||||||||||||| || |||||||||| ||||| || |||||| Sbjct: 697 tgaatgttccagcaaccgttgttgctctcggactctttttcttc 740
>ref|NM_179092.1| Arabidopsis thaliana unknown protein AT4G22890 transcript variant AT4G22890.3 mRNA, complete cds Length = 1413 Score = 40.1 bits (20), Expect = 7.3 Identities = 38/44 (86%) Strand = Plus / Plus Query: 186 tgaatgttccagcgactattgttgctctaggactgttcttcttc 229 ||||||||||||| || |||||||||| ||||| || |||||| Sbjct: 782 tgaatgttccagcaaccgttgttgctctcggactctttttcttc 825
>ref|NM_118418.2| Arabidopsis thaliana unknown protein AT4G22890 transcript variant AT4G22890.1 mRNA, complete cds Length = 1417 Score = 40.1 bits (20), Expect = 7.3 Identities = 38/44 (86%) Strand = Plus / Plus Query: 186 tgaatgttccagcgactattgttgctctaggactgttcttcttc 229 ||||||||||||| || |||||||||| ||||| || |||||| Sbjct: 782 tgaatgttccagcaaccgttgttgctctcggactctttttcttc 825
>ref|XM_447516.1| Candida glabrata CBS138 hypothetical protein (CAGL0I06116g) partial mRNA Length = 2043 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ggactgttcttcttcattga 234 |||||||||||||||||||| Sbjct: 348 ggactgttcttcttcattga 329
>gb|BT000905.1| Arabidopsis thaliana clone C105179 unknown protein (At4g22890) mRNA, complete cds Length = 1006 Score = 40.1 bits (20), Expect = 7.3 Identities = 38/44 (86%) Strand = Plus / Plus Query: 186 tgaatgttccagcgactattgttgctctaggactgttcttcttc 229 ||||||||||||| || |||||||||| ||||| || |||||| Sbjct: 611 tgaatgttccagcaaccgttgttgctctcggactctttttcttc 654
>emb|AL391807.13| Human DNA sequence from clone RP3-525N10 on chromosome 6 Contains the 5' end of the BAI3 gene for brain-specific angiogenesis inhibitor 3, a novel gene and a CpG island, complete sequence Length = 73228 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ggcttcatattcacatattt 303 |||||||||||||||||||| Sbjct: 57799 ggcttcatattcacatattt 57818
>gb|AY050904.1| Arabidopsis thaliana At4g22890 mRNA sequence Length = 1327 Score = 40.1 bits (20), Expect = 7.3 Identities = 38/44 (86%) Strand = Plus / Plus Query: 186 tgaatgttccagcgactattgttgctctaggactgttcttcttc 229 ||||||||||||| || |||||||||| ||||| || |||||| Sbjct: 675 tgaatgttccagcaaccgttgttgctctcggactctttttcttc 718
>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence Length = 1089401 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ggactgttcttcttcattga 234 |||||||||||||||||||| Sbjct: 582828 ggactgttcttcttcattga 582809
>emb|AL161558.2|ATCHRIV58 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 58 Length = 193550 Score = 40.1 bits (20), Expect = 7.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 186 tgaatgttccagcgactattgttgctctaggactgt 221 ||||||||||||| || |||||||||| ||||||| Sbjct: 50693 tgaatgttccagcaaccgttgttgctctcggactgt 50728
>emb|AL031018.1|ATF7H19 Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (ESSA project) Length = 139316 Score = 40.1 bits (20), Expect = 7.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 186 tgaatgttccagcgactattgttgctctaggactgt 221 ||||||||||||| || |||||||||| ||||||| Sbjct: 21606 tgaatgttccagcaaccgttgttgctctcggactgt 21641
>gb|AC160128.2| Mus musculus BAC clone RP23-286G17 from chromosome 12, complete sequence Length = 202315 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 cttaatcctgaagggacctt 386 |||||||||||||||||||| Sbjct: 79307 cttaatcctgaagggacctt 79288
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence Length = 3288558 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 ttcgatgaactcaagctcag 78 |||||||||||||||||||| Sbjct: 1084605 ttcgatgaactcaagctcag 1084586
>gb|AY088992.1| Arabidopsis thaliana clone 13264 mRNA, complete sequence Length = 1321 Score = 40.1 bits (20), Expect = 7.3 Identities = 38/44 (86%) Strand = Plus / Plus Query: 186 tgaatgttccagcgactattgttgctctaggactgttcttcttc 229 ||||||||||||| || |||||||||| ||||| || |||||| Sbjct: 780 tgaatgttccagcaaccgttgttgctctcggactctttttcttc 823
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 tgcgacgaacaacgtgaagt 470 |||||||||||||||||||| Sbjct: 701576 tgcgacgaacaacgtgaagt 701595 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,036,478 Number of Sequences: 3902068 Number of extensions: 4036478 Number of successful extensions: 69282 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69101 Number of HSP's gapped (non-prelim): 173 length of query: 537 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 514 effective length of database: 17,143,297,704 effective search space: 8811655019856 effective search space used: 8811655019856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)