ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8o06 |
|---|---|
| Clone Library Name | barley_pub |
>Y1500_ARATH (Q9ZVN4) Probable tyrosine-protein phosphatase At1g05000 (EC| 3.1.3.48) Length = 215 Score = 141 bits (356), Expect = 1e-33 Identities = 67/101 (66%), Positives = 81/101 (80%) Frame = +2 Query: 2 KLHQFGNRGPQGSHSSXIPDEKIREALKVVLDVRNQPLLIHCKRGKHRTGCVVGCMRKLQ 181 +L QFG G + + IPD KIR ALKV+LD +N P+LIHCKRGKHRTGC+VGC+RKLQ Sbjct: 110 RLFQFGIEGNKEPFVN-IPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQ 168 Query: 182 KWCLSSVFDEYQRFAAAKVRSTDLRFMELFDVASLKHLTTS 304 KWCL+S+FDEYQRFAAAK R +D RFME+FDV+S H+ S Sbjct: 169 KWCLTSIFDEYQRFAAAKARVSDQRFMEIFDVSSFSHIPMS 209
>SIW14_YEAST (P53965) Tyrosine-protein phosphatase SIW14 (EC 3.1.3.48)| Length = 281 Score = 107 bits (266), Expect = 3e-23 Identities = 48/102 (47%), Positives = 72/102 (70%) Frame = +2 Query: 2 KLHQFGNRGPQGSHSSXIPDEKIREALKVVLDVRNQPLLIHCKRGKHRTGCVVGCMRKLQ 181 KL+Q G G + + IP + +AL++VL+ NQP+LIHC RGKHRTGC++GC+RKLQ Sbjct: 174 KLYQVGMSGNKEPFVN-IPSHLLTKALEIVLNPANQPILIHCNRGKHRTGCLIGCIRKLQ 232 Query: 182 KWCLSSVFDEYQRFAAAKVRSTDLRFMELFDVASLKHLTTSH 307 W L+ +FDEY+RFA K R+ D +F+E++D +K + + + Sbjct: 233 NWSLTMIFDEYRRFAFPKARALDQQFIEMYDDDEIKRIASKN 274
>YNF6_YEAST (P53949) Hypothetical 22.5 kDa protein in ARP5-OMP2 intergenic| region Length = 197 Score = 67.0 bits (162), Expect = 4e-11 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Frame = +2 Query: 62 EKIREALKVVLDVRNQPLLIHCKRGKHRTGCVVGCMRK-LQKWCLSSVFDEYQRFAAAKV 238 E++ + L +VLDVRN P+L+H +GKHR G VVG +RK LQ W + + EY F+ Sbjct: 81 ERMNQVLHLVLDVRNYPILVHSNKGKHRVGVVVGIIRKLLQGWSTAGICQEYGLFSGGMK 140 Query: 239 RSTDLRFMELFD 274 DL F+ +F+ Sbjct: 141 DGVDLEFITMFE 152
>YNJ9_YEAST (P50946) Hypothetical 27.2 kDa protein in POL1-RAS2 intergenic| region Length = 238 Score = 60.8 bits (146), Expect = 3e-09 Identities = 24/61 (39%), Positives = 40/61 (65%) Frame = +2 Query: 53 IPDEKIREALKVVLDVRNQPLLIHCKRGKHRTGCVVGCMRKLQKWCLSSVFDEYQRFAAA 232 + + I L+ ++ N PLL+ C G+HRTG V+GC+R++ W L+SV +EY+RF + Sbjct: 144 LTEHSIINVLQTIVTQENYPLLVCCGMGRHRTGTVIGCLRRIMGWNLASVSEEYRRFTGS 203 Query: 233 K 235 + Sbjct: 204 R 204
>YCY5_YEAST (P25366) Hypothetical 41.6 kDa protein in HMR 5'region| Length = 362 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/70 (28%), Positives = 39/70 (55%) Frame = +2 Query: 68 IREALKVVLDVRNQPLLIHCKRGKHRTGCVVGCMRKLQKWCLSSVFDEYQRFAAAKVRST 247 ++ K +L+V N +L+ K T V+G +RK+QKW ++S+ +EY+ F+ Sbjct: 139 LKRTFKTLLNVDNYNVLLVDK-----TALVIGILRKIQKWNIASIINEYRLFSGKNRNYF 193 Query: 248 DLRFMELFDV 277 F+E+ ++ Sbjct: 194 AETFLEIINI 203
>PTP69_DROME (P16620) Tyrosine-protein phosphatase 69D precursor (EC 3.1.3.48)| (Protein-tyrosine-phosphate phosphohydrolase) (DPTP) Length = 1462 Score = 31.2 bits (69), Expect = 2.3 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = +2 Query: 65 KIREALKVVLDVRNQPLLIHCKRGKHRTGCVVGCMRKLQKWCLSSVFDEYQRFAAAKVRS 244 K + V ++ P+L+HC G RTG +V L S+ + + + + + Sbjct: 1077 KFIRQINSVYSLQRGPILVHCSAGVGRTGTLV---------ALDSLIQQLEEEDSVSIYN 1127 Query: 245 T--DLRFMELFDVASLK 289 T DLR F V SLK Sbjct: 1128 TVCDLRHQRNFLVQSLK 1144
>PTPRR_HUMAN (Q15256) Receptor-type tyrosine-protein phosphatase R precursor (EC| 3.1.3.48) (Protein-tyrosine phosphatase PCPTP1) (NC-PTPCOM1) (Ch-1PTPase) Length = 657 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 24/71 (33%) Frame = +2 Query: 32 QGSHSSXI--------PDEKIREA----LKVVLDVRNQ--------PLLIHCKRGKHRTG 151 QGSH+ + PD K ++ L+++LDV P+++HC G RTG Sbjct: 537 QGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASQGRGPVVVHCSAGIGRTG 596 Query: 152 CV----VGCMR 172 C +GC + Sbjct: 597 CFIATSIGCQQ 607
>EFG2_VIBPA (Q87M30) Elongation factor G 2 (EF-G 2)| Length = 696 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = +2 Query: 263 ELFDVASLKHLTTSH--C*PKDE*SLAPAVLPDPSISPSCPP 382 ++ V +K++ T H C PK E +L P + P+P IS + P Sbjct: 372 DIIAVVGMKNVQTGHTLCDPKHECTLEPMIFPEPVISIAVKP 413
>PTPRR_MOUSE (Q62132) Receptor-type tyrosine-protein phosphatase R precursor (EC| 3.1.3.48) (Protein-tyrosine-phosphatase SL) (Phosphotyrosine phosphatase 13) Length = 656 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 24/71 (33%) Frame = +2 Query: 32 QGSHSSXI--------PDEKIREA----LKVVLDVRNQ--------PLLIHCKRGKHRTG 151 QGSH+ + PD K ++ L+++LDV P+++HC G RTG Sbjct: 536 QGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRTG 595 Query: 152 CV----VGCMR 172 C +GC + Sbjct: 596 CFIATSIGCQQ 606
>EFG2_VIBVY (Q7MI49) Elongation factor G 2 (EF-G 2)| Length = 695 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = +2 Query: 263 ELFDVASLKHLTTSH--C*PKDE*SLAPAVLPDPSISPSCPP 382 ++ V +K++ T H C PK E +L P + P+P IS + P Sbjct: 371 DIIAVVGMKNVQTGHTLCDPKHECTLEPMIFPEPVISIAVKP 412
>CD45_HUMAN (P08575) Leukocyte common antigen precursor (EC 3.1.3.48) (L-CA)| (CD45 antigen) (T200) Length = 1304 Score = 31.2 bits (69), Expect = 2.3 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Frame = +2 Query: 101 RNQPLLIHCKRGKHRTGCVVGCMRKLQKWCLSSVFDEYQ-----RFAAAKVRSTDLRFME 265 ++ PLLIHC+ G +TG + L+ V D +Q R A + ST ++ Sbjct: 1159 KSTPLLIHCRDGSQQTGIFCALLNLLESAETEEVVDIFQVVKALRKARPGMVSTFEQYQF 1218 Query: 266 LFDV 277 L+DV Sbjct: 1219 LYDV 1222
>VH01_RACVI (P80994) Dual specificity protein phosphatase (EC 3.1.3.48) (EC| 3.1.3.16) (Late protein H1) Length = 171 Score = 30.8 bits (68), Expect = 3.0 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = +2 Query: 95 DVRNQPLLIHCKRGKHRTGCVV 160 D RN+P+L+HC G +R+G ++ Sbjct: 100 DQRNEPVLVHCAAGVNRSGAMI 121
>DUSP_VACCV (P07239) Dual specificity protein phosphatase (EC 3.1.3.48) (EC| 3.1.3.16) (Late protein H1) Length = 171 Score = 30.8 bits (68), Expect = 3.0 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = +2 Query: 95 DVRNQPLLIHCKRGKHRTGCVV 160 D RN+P+L+HC G +R+G ++ Sbjct: 100 DQRNEPVLVHCAAGVNRSGAMI 121
>DUSP_VACCC (P20495) Dual specificity protein phosphatase (EC 3.1.3.48) (EC| 3.1.3.16) (Late protein H1) Length = 171 Score = 30.8 bits (68), Expect = 3.0 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = +2 Query: 95 DVRNQPLLIHCKRGKHRTGCVV 160 D RN+P+L+HC G +R+G ++ Sbjct: 100 DQRNEPVLVHCAAGVNRSGAMI 121
>EFG1_SYNY3 (P28371) Elongation factor G 1 (EF-G 1)| Length = 695 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = +2 Query: 263 ELFDVASLKHLTTSH--C*PKDE*SLAPAVLPDPSISPSCPP 382 ++ + +K++ T H C PK+ +L P V PDP IS + P Sbjct: 371 DIVAIVGMKNVQTGHTLCDPKNPATLEPMVFPDPVISIAIKP 412
>DUSP_VARV (P33064) Dual specificity protein phosphatase (EC 3.1.3.48) (EC| 3.1.3.16) (Late protein H1) Length = 171 Score = 30.4 bits (67), Expect = 4.0 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = +2 Query: 95 DVRNQPLLIHCKRGKHRTGCVV 160 D RN+P+L+HC G +R+G ++ Sbjct: 100 DQRNEPVLVHCVAGVNRSGAMI 121
>VLPB_MYCHR (P29229) Variant surface antigen B precursor (VLPB prolipoprotein)| Length = 174 Score = 30.0 bits (66), Expect = 5.2 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -3 Query: 396 GSVTAGGQDGDILGSGRTAGASDHSSFG 313 GS T+GGQ G LGSG T G ++ G Sbjct: 44 GSSTSGGQSGTGLGSGTTTGGQSGTTTG 71
>Y3402_MYCTU (Q50723) Hypothetical protein Rv3402c/MT3510| Length = 412 Score = 29.6 bits (65), Expect = 6.7 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 217 ALRCCESEEHRPEIHGAVRRRELEAPDH 300 A CC S +H+ + G++RR +EA D+ Sbjct: 323 ASACCTSADHKAAVLGSLRRHAIEARDY 350
>PTPRR_RAT (O08617) Receptor-type tyrosine-protein phosphatase R precursor (EC| 3.1.3.48) (Protein-tyrosine phosphatase PCPTP1) (Tyrosine phosphatase CBPTP) (PC12-PTP1) Length = 656 Score = 29.6 bits (65), Expect = 6.7 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 24/71 (33%) Frame = +2 Query: 32 QGSHSSXI--------PDEKIREA----LKVVLDVRNQ--------PLLIHCKRGKHRTG 151 +GSH+ + PD K ++ L+++LDV P+++HC G RTG Sbjct: 536 RGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRTG 595 Query: 152 CV----VGCMR 172 C +GC + Sbjct: 596 CFIATSIGCQQ 606
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +2 Query: 329 SLAPAVLPDPSISPSCPPAVTEPTQ 403 S AP P PS+S S PAV PTQ Sbjct: 1436 SPAPGTSPQPSLSASTEPAVPTPTQ 1460
>EFG2_VIBCH (Q9KPM5) Elongation factor G 2 (EF-G 2)| Length = 695 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +2 Query: 263 ELFDVASLKHLTTSH--C*PKDE*SLAPAVLPDPSISPSCPP 382 ++ + +K++ T H C PK E +L P + P P IS + P Sbjct: 371 DIIAIVGMKNVQTGHTLCDPKHECTLEPMIFPTPVISIAVKP 412
>Y2006_AERPE (Q9YAD3) UPF0106 protein APE2006| Length = 187 Score = 29.3 bits (64), Expect = 8.8 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = -2 Query: 376 TGWRYTRIWEDGGGERSLVLWLTM*GGQV 290 +G RY R+W +GGGE V+ LTM G V Sbjct: 77 SGRRYVRMWREGGGE---VVHLTMYGVNV 102
>PHF7_HUMAN (Q9BWX1) PHD finger protein 7 (Protein NYD-SP6)| Length = 381 Score = 29.3 bits (64), Expect = 8.8 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Frame = +2 Query: 2 KLHQFG--NRGPQGSHSSXIPDEKIREALKVVLDVRNQPLLIHCKRGKHRTGCVVGCMRK 175 KL Q G NRG G I E R + K+ + + I+C++ + + C + Sbjct: 67 KLPQRGQSNRGFHGFLPEDIKKEAARASRKICFVCKKKGAAINCQKDQCLRNFHLPCGQ- 125 Query: 176 LQKWCLSSVFDEYQRF 223 ++ CLS F EY+ F Sbjct: 126 -ERGCLSQFFGEYKSF 140
>PTN14_MOUSE (Q62130) Tyrosine-protein phosphatase non-receptor type 14 (EC| 3.1.3.48) (Protein-tyrosine phosphatase PTP36) Length = 1189 Score = 29.3 bits (64), Expect = 8.8 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%) Frame = +2 Query: 62 EKIREALKVVLD---VRNQPLLIHCKRGKHRTGCVVGCMRKLQKWCL 193 + +R VL+ R+ P+++HC G RTG V+ + +L +CL Sbjct: 1099 QSVRRHTNSVLEGIRTRHPPIVVHCSAGVGRTGVVI--LSELMIYCL 1143
>CDC14_YEAST (Q00684) Tyrosine-protein phosphatase CDC14 (EC 3.1.3.48)| Length = 551 Score = 29.3 bits (64), Expect = 8.8 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 Query: 101 RNQPLLIHCKRGKHRTGCVVG 163 R + +HCK G RTGC++G Sbjct: 275 RGGKIAVHCKAGLGRTGCLIG 295
>CC14B_MOUSE (Q6PFY9) Dual specificity protein phosphatase CDC14B (EC 3.1.3.48)| (EC 3.1.3.16) (CDC14 cell division cycle 14 homolog B) Length = 485 Score = 29.3 bits (64), Expect = 8.8 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 68 IREALKVVLDVRNQPLLIHCKRGKHRTGCVVGC 166 ++E L + +V+ + +HCK G RTG ++GC Sbjct: 296 VQEFLDICENVKGA-IAVHCKAGLGRTGTLIGC 327
>ENTK_PIG (P98074) Enteropeptidase precursor (EC 3.4.21.9) (Enterokinase)| [Contains: Enteropeptidase non-catalytic mini chain; Enteropeptidase non-catalytic heavy chain; Enteropeptidase catalytic light chain] Length = 1034 Score = 29.3 bits (64), Expect = 8.8 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -2 Query: 484 FFFNLLFCRGLVAISWIHSTGSKNYSLLSRFSDRRRT 374 F ++ C GL+A+SW+ GS+ + L + + R T Sbjct: 25 FAILMVLCAGLIAVSWLTIKGSEKDAALGKSHEARGT 61 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,551,575 Number of Sequences: 219361 Number of extensions: 1581664 Number of successful extensions: 4558 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4342 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4555 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
