Clone Name | bags8o06 |
---|---|
Clone Library Name | barley_pub |
>gb|AY669072.1| Oryza sativa dual-specificity phosphatase protein mRNA, complete cds Length = 1119 Score = 276 bits (139), Expect = 8e-71 Identities = 275/317 (86%), Gaps = 3/317 (0%) Strand = Plus / Plus Query: 1 caagctccaccagttcggnaatcgagggccgcaaggnagccattcgtcgagnatacccga 60 |||||||||||||||||| ||||||||| ||||||| | ||||||||| | || || || Sbjct: 484 caagctccaccagttcgg-aatcgaggggcgcaaggaa-ccattcgtcaa-catccctga 540 Query: 61 tgagaaaatccgggaggcacttaaagttgtcctagatgtaagaaatcaacctctgcttat 120 || ||||| || ||||| || |||||||||||||| |||| ||| |||||||||||||| Sbjct: 541 cgacaaaattcgagaggcgctcaaagttgtcctagacgtaaaaaaccaacctctgcttat 600 Query: 121 tcactgcaagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttgca 180 |||||||||||||||||||||||| || || |||||||| || ||| |||||||| | || Sbjct: 601 tcactgcaagagaggcaagcaccgcaccggctgcgtcgtggggtgcttgaggaagcttca 660 Query: 181 gaaatggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaagtgag 240 |||||||||| |||| || || || |||||||||||||||||||| |||||||| | ||| Sbjct: 661 gaaatggtgcttgtcttcagtgttcgacgagtaccagcgcttcgccgctgcgaaggcgag 720 Query: 241 gagcaccgacctgagattcatggagctgttcgacgtcgcgagcttgaagcacctgaccac 300 ||||||||| | |||||||||||||||||||||| || | ||||||||||||||||| | Sbjct: 721 gagcaccgatcagagattcatggagctgttcgacatctcaagcttgaagcacctgacagc 780 Query: 301 ctcacattgttaaccaa 317 |||||||||||||||| Sbjct: 781 ttcacattgttaaccaa 797 Score = 93.7 bits (47), Expect = 6e-16 Identities = 73/82 (89%) Strand = Plus / Plus Query: 486 ttgagagctctattttttccctgctcaggtccctgcagatcctaagaaccagaaagttgt 545 ||||||| |||| |||| |||||| || ||||||||||||||| |||||||| |||||| Sbjct: 954 ttgagagttctagttttctcctgcttagctccctgcagatcctatgaaccagacagttgt 1013 Query: 546 gggtaggattgcaagangtttt 567 |||||||||||||||| ||||| Sbjct: 1014 gggtaggattgcaagaggtttt 1035 Score = 56.0 bits (28), Expect = 1e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 400 tcagcagtgaataatttttggaacccgtagaatgaa 435 |||||||||||||||||| ||||||||||||||||| Sbjct: 887 tcagcagtgaataatttt-ggaacccgtagaatgaa 921
>dbj|AK065860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043L18, full insert sequence Length = 3738 Score = 256 bits (129), Expect = 7e-65 Identities = 222/253 (87%) Strand = Plus / Plus Query: 65 aaaatccgggaggcacttaaagttgtcctagatgtaagaaatcaacctctgcttattcac 124 ||||| || ||||| || |||||||||||||| |||| ||| |||||||||||||||||| Sbjct: 3138 aaaattcgagaggcgctcaaagttgtcctagacgtaaaaaaccaacctctgcttattcac 3197 Query: 125 tgcaagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaa 184 |||||||||||||||||||| || || |||||||| || ||| |||||||| | |||||| Sbjct: 3198 tgcaagagaggcaagcaccgcaccggctgcgtcgtggggtgcttgaggaagcttcagaaa 3257 Query: 185 tggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagc 244 |||||| |||| || || || |||||||||||||||||||| |||||||| | ||||||| Sbjct: 3258 tggtgcttgtcttcagtgttcgacgagtaccagcgcttcgccgctgcgaaggcgaggagc 3317 Query: 245 accgacctgagattcatggagctgttcgacgtcgcgagcttgaagcacctgaccacctca 304 ||||| | |||||||||||||||||||||| || | ||||||||||||||||| | ||| Sbjct: 3318 accgatcagagattcatggagctgttcgacatctcaagcttgaagcacctgacagcttca 3377 Query: 305 cattgttaaccaa 317 ||||||||||||| Sbjct: 3378 cattgttaaccaa 3390 Score = 93.7 bits (47), Expect = 6e-16 Identities = 73/82 (89%) Strand = Plus / Plus Query: 486 ttgagagctctattttttccctgctcaggtccctgcagatcctaagaaccagaaagttgt 545 ||||||| |||| |||| |||||| || ||||||||||||||| |||||||| |||||| Sbjct: 3547 ttgagagttctagttttctcctgcttagctccctgcagatcctatgaaccagacagttgt 3606 Query: 546 gggtaggattgcaagangtttt 567 |||||||||||||||| ||||| Sbjct: 3607 gggtaggattgcaagaggtttt 3628 Score = 56.0 bits (28), Expect = 1e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 400 tcagcagtgaataatttttggaacccgtagaatgaa 435 |||||||||||||||||| ||||||||||||||||| Sbjct: 3480 tcagcagtgaataatttt-ggaacccgtagaatgaa 3514 Score = 48.1 bits (24), Expect = 0.033 Identities = 34/36 (94%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 1 caagctccaccagttcggnaatcgagggccgcaagg 36 |||||||||||||||||| ||||||||| ||||||| Sbjct: 488 caagctccaccagttcgg-aatcgaggggcgcaagg 522
>gb|AY103994.1| Zea mays PCO089335 mRNA sequence Length = 730 Score = 228 bits (115), Expect = 2e-56 Identities = 226/263 (85%) Strand = Plus / Plus Query: 53 atacccgatgagaaaatccgggaggcacttaaagttgtcctagatgtaagaaatcaacct 112 ||||||||||| ||||| ||||||| || ||||||||| |||| |||||| |||||| Sbjct: 12 atacccgatgacaaaataagggaggcgctcaaagttgtcttagacccaagaaaccaacct 71 Query: 113 ctgcttattcactgcaagagaggcaagcaccgaactggatgcgtcgttggttgcatgagg 172 ||||||||||| || ||||||||||||||||||||||| || | || || ||| ||||| Sbjct: 72 ctgcttattcattgtaagagaggcaagcaccgaactggttgtttggtcgggtgcttgagg 131 Query: 173 aagttgcagaaatggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcg 232 ||| |||||||||||||| |||| || ||||| ||||||||||| ||||| || |||||| Sbjct: 132 aagctgcagaaatggtgcttgtcttcagtcttcgacgagtaccatcgctttgccgctgcg 191 Query: 233 aaagtgaggagcaccgacctgagattcatggagctgttcgacgtcgcgagcttgaagcac 292 |||| | | | ||| |||| ||||||||||||||||||||||||| | |||||||||||| Sbjct: 192 aaagcgcgaatcactgaccagagattcatggagctgttcgacgtctcaagcttgaagcac 251 Query: 293 ctgaccacctcacattgttaacc 315 ||||| |||||||||||||||| Sbjct: 252 ctgacaccctcacattgttaacc 274 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 389 actgaaccgactcagcagtgaataatttt 417 |||||||||| ||||| |||||||||||| Sbjct: 342 actgaaccgattcagccgtgaataatttt 370
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 167 bits (84), Expect = 5e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 138 agcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcat 197 ||||||| || || |||||||| || ||| |||||||| | |||||||||||| |||| | Sbjct: 5569364 agcaccgcaccggctgcgtcgtggggtgcttgaggaagcttcagaaatggtgcttgtctt 5569423 Query: 198 cggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcaccgacctgagat 257 | || || |||||||||||||||||||| |||||||| | |||||||||||| | ||||| Sbjct: 5569424 cagtgttcgacgagtaccagcgcttcgccgctgcgaaggcgaggagcaccgatcagagat 5569483 Query: 258 tcatggagctgttcgacgtcgcgagcttgaagcacctgaccacctcacattgttaaccaa 317 ||||||||||||||||| || | ||||||||||||||||| | |||||||||||||||| Sbjct: 5569484 tcatggagctgttcgacatctcaagcttgaagcacctgacagcttcacattgttaaccaa 5569543 Score = 93.7 bits (47), Expect = 6e-16 Identities = 73/82 (89%) Strand = Plus / Plus Query: 486 ttgagagctctattttttccctgctcaggtccctgcagatcctaagaaccagaaagttgt 545 ||||||| |||| |||| |||||| || ||||||||||||||| |||||||| |||||| Sbjct: 5569700 ttgagagttctagttttctcctgcttagctccctgcagatcctatgaaccagacagttgt 5569759 Query: 546 gggtaggattgcaagangtttt 567 |||||||||||||||| ||||| Sbjct: 5569760 gggtaggattgcaagaggtttt 5569781 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 98 gtaagaaatcaacctctgcttattcactgcaagagaggcaag 139 |||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 5569216 gtaaaaaaccaacctctgcttattcactgcaagagaggcaag 5569257 Score = 56.0 bits (28), Expect = 1e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 400 tcagcagtgaataatttttggaacccgtagaatgaa 435 |||||||||||||||||| ||||||||||||||||| Sbjct: 5569633 tcagcagtgaataatttt-ggaacccgtagaatgaa 5569667 Score = 48.1 bits (24), Expect = 0.033 Identities = 34/36 (94%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 1 caagctccaccagttcggnaatcgagggccgcaagg 36 |||||||||||||||||| ||||||||| ||||||| Sbjct: 5566443 caagctccaccagttcgg-aatcgaggggcgcaagg 5566477
>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664C05 Length = 165354 Score = 167 bits (84), Expect = 5e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 138 agcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcat 197 ||||||| || || |||||||| || ||| |||||||| | |||||||||||| |||| | Sbjct: 116272 agcaccgcaccggctgcgtcgtggggtgcttgaggaagcttcagaaatggtgcttgtctt 116331 Query: 198 cggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcaccgacctgagat 257 | || || |||||||||||||||||||| |||||||| | |||||||||||| | ||||| Sbjct: 116332 cagtgttcgacgagtaccagcgcttcgccgctgcgaaggcgaggagcaccgatcagagat 116391 Query: 258 tcatggagctgttcgacgtcgcgagcttgaagcacctgaccacctcacattgttaaccaa 317 ||||||||||||||||| || | ||||||||||||||||| | |||||||||||||||| Sbjct: 116392 tcatggagctgttcgacatctcaagcttgaagcacctgacagcttcacattgttaaccaa 116451 Score = 93.7 bits (47), Expect = 6e-16 Identities = 73/82 (89%) Strand = Plus / Plus Query: 486 ttgagagctctattttttccctgctcaggtccctgcagatcctaagaaccagaaagttgt 545 ||||||| |||| |||| |||||| || ||||||||||||||| |||||||| |||||| Sbjct: 116608 ttgagagttctagttttctcctgcttagctccctgcagatcctatgaaccagacagttgt 116667 Query: 546 gggtaggattgcaagangtttt 567 |||||||||||||||| ||||| Sbjct: 116668 gggtaggattgcaagaggtttt 116689 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 98 gtaagaaatcaacctctgcttattcactgcaagagaggcaag 139 |||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 116124 gtaaaaaaccaacctctgcttattcactgcaagagaggcaag 116165 Score = 56.0 bits (28), Expect = 1e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 400 tcagcagtgaataatttttggaacccgtagaatgaa 435 |||||||||||||||||| ||||||||||||||||| Sbjct: 116541 tcagcagtgaataatttt-ggaacccgtagaatgaa 116575 Score = 48.1 bits (24), Expect = 0.033 Identities = 34/36 (94%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 1 caagctccaccagttcggnaatcgagggccgcaagg 36 |||||||||||||||||| ||||||||| ||||||| Sbjct: 113351 caagctccaccagttcgg-aatcgaggggcgcaagg 113385
>gb|AF057522.1|AF057522 Zea mays hypoxically induced transcript 2 (HIT2) mRNA, partial cds Length = 312 Score = 159 bits (80), Expect = 1e-35 Identities = 176/208 (84%) Strand = Plus / Plus Query: 68 atccgggaggcacttaaagttgtcctagatgtaagaaatcaacctctgcttattcactgc 127 ||||||||||| || ||||||||||| || |||||||| || || | || || |||||| Sbjct: 93 atccgggaggcgctcaaagttgtccttgacgtaagaaaccagccggtcctcatccactgc 152 Query: 128 aagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatgg 187 ||||||||| ||||||| ||||| |||||||| || ||| |||||||| ||||||| ||| Sbjct: 153 aagagaggcgagcaccggactggctgcgtcgtcggatgcctgaggaagctgcagaagtgg 212 Query: 188 tgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcacc 247 |||||||| || || || |||||||||| || |||||| || ||||| | ||||| |||| Sbjct: 213 tgcctgtcctccgtgttcgacgagtacctgcacttcgcggcggcgaaggcgaggaccacc 272 Query: 248 gacctgagattcatggagctgttcgacg 275 |||| ||| ||||||||||||||||||| Sbjct: 273 gaccagaggttcatggagctgttcgacg 300
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 91.7 bits (46), Expect = 2e-15 Identities = 145/178 (81%) Strand = Plus / Minus Query: 138 agcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcat 197 ||||||| ||||| ||||||||||| ||| |||| |||||||||||||||||||| | | Sbjct: 32557030 agcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaactt 32556971 Query: 198 cggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcaccgacctgagat 257 | || || ||||||||||||| || || || ||||| | ||| || || || | ||||| Sbjct: 32556970 cagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagat 32556911 Query: 258 tcatggagctgttcgacgtcgcgagcttgaagcacctgaccacctcacattgttaacc 315 ||||||||||||| ||| | ||||||| ||||||||| ||||||| |||||||| Sbjct: 32556910 tcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaacc 32556853 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Minus Query: 98 gtaagaaatcaacctctgcttattcactgcaagagaggcaag 139 ||||| |||||||| |||| || |||||||||||||||||| Sbjct: 32557173 gtaaggaatcaaccggtgctcatccactgcaagagaggcaag 32557132
>dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1353_F08 Length = 101988 Score = 91.7 bits (46), Expect = 2e-15 Identities = 145/178 (81%) Strand = Plus / Minus Query: 138 agcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcat 197 ||||||| ||||| ||||||||||| ||| |||| |||||||||||||||||||| | | Sbjct: 54003 agcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaactt 53944 Query: 198 cggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcaccgacctgagat 257 | || || ||||||||||||| || || || ||||| | ||| || || || | ||||| Sbjct: 53943 cagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagat 53884 Query: 258 tcatggagctgttcgacgtcgcgagcttgaagcacctgaccacctcacattgttaacc 315 ||||||||||||| ||| | ||||||| ||||||||| ||||||| |||||||| Sbjct: 53883 tcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaacc 53826 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Minus Query: 98 gtaagaaatcaacctctgcttattcactgcaagagaggcaag 139 ||||| |||||||| |||| || |||||||||||||||||| Sbjct: 54146 gtaaggaatcaaccggtgctcatccactgcaagagaggcaag 54105
>gb|AY789640.1| Capsicum annuum tyrosine specific protein phosphatase family protein mRNA, complete cds Length = 1319 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 119 attcactgcaagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttg 178 ||||||||||| | || |||||||||||||| ||| | ||||| ||| |||| || ||| Sbjct: 557 attcactgcaaacgcgggaagcaccgaactgggtgccttgttggatgcttgagaaaattg 616 Query: 179 cagaaatggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaag 236 ||||| |||||||| |||| || |||||||||||||| || || |||||||| |||| Sbjct: 617 cagaagtggtgcctaacatctgtgtttgacgagtaccaacgttttgctgctgccaaag 674
>ref|XM_450177.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1366 Score = 75.8 bits (38), Expect = 1e-10 Identities = 95/114 (83%) Strand = Plus / Plus Query: 67 aatccgggaggcacttaaagttgtcctagatgtaagaaatcaacctctgcttattcactg 126 |||||| ||||| || |||||||| |||||||| |||||| || ||||||||||||| Sbjct: 615 aatccgtgaggctctaaaagttgtgctagatgtggcaaatcacccggtgcttattcactg 674 Query: 127 caagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttgca 180 |||| | || ||||| |||||||| || || ||||||||| ||||||| ||||| Sbjct: 675 caagcgtggaaagcatcgaactggctgtgtggttggttgcttgaggaaattgca 728
>dbj|AK121831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099M08, full insert sequence Length = 1365 Score = 75.8 bits (38), Expect = 1e-10 Identities = 95/114 (83%) Strand = Plus / Plus Query: 67 aatccgggaggcacttaaagttgtcctagatgtaagaaatcaacctctgcttattcactg 126 |||||| ||||| || |||||||| |||||||| |||||| || ||||||||||||| Sbjct: 615 aatccgtgaggctctaaaagttgtgctagatgtggcaaatcacccggtgcttattcactg 674 Query: 127 caagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttgca 180 |||| | || ||||| |||||||| || || ||||||||| ||||||| ||||| Sbjct: 675 caagcgtggaaagcatcgaactggctgtgtggttggttgcttgaggaaattgca 728
>ref|XM_468013.1| Oryza sativa (japonica cultivar-group), mRNA Length = 600 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 139 gcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcatc 198 |||||| ||||| ||||||||||| ||| |||| |||||||||||||||||||| | || Sbjct: 490 gcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttc 549 Query: 199 ggtctttgacgagtaccagc 218 || || ||||||||||||| Sbjct: 550 agttttcgacgagtaccagc 569
>emb|CR931731.1| Medicago truncatula chromosome 5 clone mth2-83l19, COMPLETE SEQUENCE Length = 120299 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 177 tgcagaaatggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaag 236 |||| ||||||||| |||| || || |||||||||||||||||||| || || ||||||| Sbjct: 86964 tgcaaaaatggtgcttgtcgtctgtttttgacgagtaccagcgctttgcagcagcgaaag 87023
>gb|AF366443.1|AF366443 Allium cepa clone AGF096 maintainer line sequence Length = 858 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 185 tggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaag 236 |||||||| || ||||| |||||||||||||| ||||| |||||||| |||| Sbjct: 375 tggtgcctttcttcggtttttgacgagtaccatcgctttgctgctgccaaag 324
>gb|AY103919.1| Zea mays PCO099246 mRNA sequence Length = 1461 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 238 gaggagcaccgacctgagattcatggagctgttcgacgtcgcgagcttgaagcacctg 295 ||||||||| |||| ||| ||||||||||||||||| | ||||||||| ||||||| Sbjct: 147 gaggagcactgaccagaggttcatggagctgttcgatgcttcgagcttgacgcacctg 90
>ref|NM_100379.2| Arabidopsis thaliana phosphoprotein phosphatase AT1G05000 mRNA, complete cds Length = 1104 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Plus Query: 158 gttggttgcatgaggaagttgcagaaatggtgcctgtcatcggtctttgacgagtacca 216 ||||||||| |||||||| | ||||||||||| || ||||| | || ||||||||||| Sbjct: 548 gttggttgcttgaggaagctccagaaatggtgtttgacatcgatattcgacgagtacca 606
>gb|AC005322.2|T7A14 Arabidopsis thaliana chromosome 1 BAC T7A14 sequence, complete sequence Length = 54157 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Minus Query: 158 gttggttgcatgaggaagttgcagaaatggtgcctgtcatcggtctttgacgagtacca 216 ||||||||| |||||||| | ||||||||||| || ||||| | || ||||||||||| Sbjct: 48326 gttggttgcttgaggaagctccagaaatggtgtttgacatcgatattcgacgagtacca 48268
>gb|BT005210.1| Arabidopsis thaliana At1g05000 mRNA, complete cds Length = 648 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Plus Query: 158 gttggttgcatgaggaagttgcagaaatggtgcctgtcatcggtctttgacgagtacca 216 ||||||||| |||||||| | ||||||||||| || ||||| | || ||||||||||| Sbjct: 481 gttggttgcttgaggaagctccagaaatggtgtttgacatcgatattcgacgagtacca 539
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 204 ttgacgagtaccagcgcttcgc 225 |||||||||||||||||||||| Sbjct: 1849978 ttgacgagtaccagcgcttcgc 1849999
>gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166966 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 169 gaggaagttgcagaaatggtgcctg 193 ||||||||||||||||||| ||||| Sbjct: 10634 gaggaagttgcagaaatggggcctg 10610
>emb|AJ414553.1|BPR414553 Beta procumbens repeat element AluI family pAp22, clone pAp22 Length = 582 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 461 gcaaaacagaagattgaagaa 481 ||||||||||||||||||||| Sbjct: 266 gcaaaacagaagattgaagaa 286
>emb|AJ438178.1|BPR438178 Beta procumbens retrotransposon Athila-like Ty3-gypsy Length = 2110 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 461 gcaaaacagaagattgaagaa 481 ||||||||||||||||||||| Sbjct: 266 gcaaaacagaagattgaagaa 286
>ref|NM_128856.3| Arabidopsis thaliana catalytic/ phosphoprotein phosphatase AT2G32960 mRNA, complete cds Length = 1229 Score = 40.1 bits (20), Expect = 8.0 Identities = 59/72 (81%) Strand = Plus / Plus Query: 119 attcactgcaagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttg 178 ||||| ||||| ||||||||||| |||| || || | ||||| ||||||||||| | Sbjct: 777 attcattgcaaacgaggcaagcacagaaccgggtgtcttgttgggtgcatgaggaaactc 836 Query: 179 cagaaatggtgc 190 |||||||||||| Sbjct: 837 cagaaatggtgc 848
>gb|AC160526.13| Mus musculus chromosome 8, clone RP24-191C23, complete sequence Length = 174746 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 agcttgaagcacctgaccac 300 |||||||||||||||||||| Sbjct: 125811 agcttgaagcacctgaccac 125792
>gb|BC068781.1| Xenopus laevis hypothetical protein MGC81311, mRNA (cDNA clone MGC:81311 IMAGE:6632546), complete cds Length = 3794 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 aacagaagattgaagaagaa 484 |||||||||||||||||||| Sbjct: 2782 aacagaagattgaagaagaa 2801
>ref|XM_746651.1| Aspergillus fumigatus Af293 SNF2 family helicase (Afu4g10830) partial mRNA Length = 3543 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 gggaggcacttaaagttgtc 91 |||||||||||||||||||| Sbjct: 425 gggaggcacttaaagttgtc 444
>gb|BC043764.1| Xenopus laevis similar to serine/threonine protein kinase TAO1, mRNA (cDNA clone MGC:52943 IMAGE:4930266), complete cds Length = 3489 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 aacagaagattgaagaagaa 484 |||||||||||||||||||| Sbjct: 2890 aacagaagattgaagaagaa 2909
>gb|BT006379.1| Arabidopsis thaliana At2g32960 gene, complete cds Length = 774 Score = 40.1 bits (20), Expect = 8.0 Identities = 59/72 (81%) Strand = Plus / Plus Query: 119 attcactgcaagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttg 178 ||||| ||||| ||||||||||| |||| || || | ||||| ||||||||||| | Sbjct: 568 attcattgcaaacgaggcaagcacagaaccgggtgtcttgttgggtgcatgaggaaactc 627 Query: 179 cagaaatggtgc 190 |||||||||||| Sbjct: 628 cagaaatggtgc 639
>gb|AY786992.1| Azospirillum lipoferum nitrogenase subunit NifH (nifH) gene, partial cds; DraT (draT), DraG (draG), ArsC, Glutamine amidotransferases class-II (YafJ-like), AcpD, nucleoside phosphorylase, signal recognition particle GTPase, and MiaB (miaB) genes, complete cds; and DapF (dapF) gene, partial cds Length = 11856 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 cgcccccgccgtcctcccag 353 |||||||||||||||||||| Sbjct: 2452 cgcccccgccgtcctcccag 2433
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 caaaacagaagattgaagaa 481 |||||||||||||||||||| Sbjct: 720375 caaaacagaagattgaagaa 720356 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,156,347 Number of Sequences: 3902068 Number of extensions: 5156347 Number of successful extensions: 98119 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97955 Number of HSP's gapped (non-prelim): 156 length of query: 587 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 564 effective length of database: 17,143,297,704 effective search space: 9668819905056 effective search space used: 9668819905056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)