ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8o06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY669072.1| Oryza sativa dual-specificity phosphatase protein... 276 8e-71
2dbj|AK065860.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 7e-65
3gb|AY103994.1| Zea mays PCO089335 mRNA sequence 228 2e-56
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
5dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
6gb|AF057522.1|AF057522 Zea mays hypoxically induced transcript 2... 159 1e-35
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
8dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
9gb|AY789640.1| Capsicum annuum tyrosine specific protein phospha... 76 1e-10
10ref|XM_450177.1| Oryza sativa (japonica cultivar-group), mRNA 76 1e-10
11dbj|AK121831.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
12ref|XM_468013.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
13emb|CR931731.1| Medicago truncatula chromosome 5 clone mth2-83l1... 56 1e-04
14gb|AF366443.1|AF366443 Allium cepa clone AGF096 maintainer line ... 56 1e-04
15gb|AY103919.1| Zea mays PCO099246 mRNA sequence 52 0.002
16ref|NM_100379.2| Arabidopsis thaliana phosphoprotein phosphatase... 46 0.13
17gb|AC005322.2|T7A14 Arabidopsis thaliana chromosome 1 BAC T7A14 ... 46 0.13
18gb|BT005210.1| Arabidopsis thaliana At1g05000 mRNA, complete cds 46 0.13
19gb|CP000110.1| Synechococcus sp. CC9605, complete genome 44 0.51
20gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Canc... 42 2.0
21emb|AJ414553.1|BPR414553 Beta procumbens repeat element AluI fam... 42 2.0
22emb|AJ438178.1|BPR438178 Beta procumbens retrotransposon Athila-... 42 2.0
23ref|NM_128856.3| Arabidopsis thaliana catalytic/ phosphoprotein ... 40 8.0
24gb|AC160526.13| Mus musculus chromosome 8, clone RP24-191C23, co... 40 8.0
25gb|BC068781.1| Xenopus laevis hypothetical protein MGC81311, mRN... 40 8.0
26ref|XM_746651.1| Aspergillus fumigatus Af293 SNF2 family helicas... 40 8.0
27gb|BC043764.1| Xenopus laevis similar to serine/threonine protei... 40 8.0
28gb|BT006379.1| Arabidopsis thaliana At2g32960 gene, complete cds 40 8.0
29gb|AY786992.1| Azospirillum lipoferum nitrogenase subunit NifH (... 40 8.0
30gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 8.0

>gb|AY669072.1| Oryza sativa dual-specificity phosphatase protein mRNA, complete
           cds
          Length = 1119

 Score =  276 bits (139), Expect = 8e-71
 Identities = 275/317 (86%), Gaps = 3/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagctccaccagttcggnaatcgagggccgcaaggnagccattcgtcgagnatacccga 60
           |||||||||||||||||| ||||||||| ||||||| | ||||||||| |  || || ||
Sbjct: 484 caagctccaccagttcgg-aatcgaggggcgcaaggaa-ccattcgtcaa-catccctga 540

                                                                       
Query: 61  tgagaaaatccgggaggcacttaaagttgtcctagatgtaagaaatcaacctctgcttat 120
            || ||||| || ||||| || |||||||||||||| |||| ||| ||||||||||||||
Sbjct: 541 cgacaaaattcgagaggcgctcaaagttgtcctagacgtaaaaaaccaacctctgcttat 600

                                                                       
Query: 121 tcactgcaagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttgca 180
           |||||||||||||||||||||||| || || |||||||| || ||| |||||||| | ||
Sbjct: 601 tcactgcaagagaggcaagcaccgcaccggctgcgtcgtggggtgcttgaggaagcttca 660

                                                                       
Query: 181 gaaatggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaagtgag 240
           |||||||||| |||| || || || |||||||||||||||||||| |||||||| | |||
Sbjct: 661 gaaatggtgcttgtcttcagtgttcgacgagtaccagcgcttcgccgctgcgaaggcgag 720

                                                                       
Query: 241 gagcaccgacctgagattcatggagctgttcgacgtcgcgagcttgaagcacctgaccac 300
           ||||||||| | |||||||||||||||||||||| || | |||||||||||||||||  |
Sbjct: 721 gagcaccgatcagagattcatggagctgttcgacatctcaagcttgaagcacctgacagc 780

                            
Query: 301 ctcacattgttaaccaa 317
            ||||||||||||||||
Sbjct: 781 ttcacattgttaaccaa 797



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                        
Query: 486  ttgagagctctattttttccctgctcaggtccctgcagatcctaagaaccagaaagttgt 545
            ||||||| |||| ||||  |||||| || ||||||||||||||| |||||||| ||||||
Sbjct: 954  ttgagagttctagttttctcctgcttagctccctgcagatcctatgaaccagacagttgt 1013

                                  
Query: 546  gggtaggattgcaagangtttt 567
            |||||||||||||||| |||||
Sbjct: 1014 gggtaggattgcaagaggtttt 1035



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                               
Query: 400 tcagcagtgaataatttttggaacccgtagaatgaa 435
           |||||||||||||||||| |||||||||||||||||
Sbjct: 887 tcagcagtgaataatttt-ggaacccgtagaatgaa 921



to top

>dbj|AK065860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043L18, full
            insert sequence
          Length = 3738

 Score =  256 bits (129), Expect = 7e-65
 Identities = 222/253 (87%)
 Strand = Plus / Plus

                                                                        
Query: 65   aaaatccgggaggcacttaaagttgtcctagatgtaagaaatcaacctctgcttattcac 124
            ||||| || ||||| || |||||||||||||| |||| ||| ||||||||||||||||||
Sbjct: 3138 aaaattcgagaggcgctcaaagttgtcctagacgtaaaaaaccaacctctgcttattcac 3197

                                                                        
Query: 125  tgcaagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaa 184
            |||||||||||||||||||| || || |||||||| || ||| |||||||| | ||||||
Sbjct: 3198 tgcaagagaggcaagcaccgcaccggctgcgtcgtggggtgcttgaggaagcttcagaaa 3257

                                                                        
Query: 185  tggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagc 244
            |||||| |||| || || || |||||||||||||||||||| |||||||| | |||||||
Sbjct: 3258 tggtgcttgtcttcagtgttcgacgagtaccagcgcttcgccgctgcgaaggcgaggagc 3317

                                                                        
Query: 245  accgacctgagattcatggagctgttcgacgtcgcgagcttgaagcacctgaccacctca 304
            ||||| | |||||||||||||||||||||| || | |||||||||||||||||  | |||
Sbjct: 3318 accgatcagagattcatggagctgttcgacatctcaagcttgaagcacctgacagcttca 3377

                         
Query: 305  cattgttaaccaa 317
            |||||||||||||
Sbjct: 3378 cattgttaaccaa 3390



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                        
Query: 486  ttgagagctctattttttccctgctcaggtccctgcagatcctaagaaccagaaagttgt 545
            ||||||| |||| ||||  |||||| || ||||||||||||||| |||||||| ||||||
Sbjct: 3547 ttgagagttctagttttctcctgcttagctccctgcagatcctatgaaccagacagttgt 3606

                                  
Query: 546  gggtaggattgcaagangtttt 567
            |||||||||||||||| |||||
Sbjct: 3607 gggtaggattgcaagaggtttt 3628



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                
Query: 400  tcagcagtgaataatttttggaacccgtagaatgaa 435
            |||||||||||||||||| |||||||||||||||||
Sbjct: 3480 tcagcagtgaataatttt-ggaacccgtagaatgaa 3514



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                               
Query: 1   caagctccaccagttcggnaatcgagggccgcaagg 36
           |||||||||||||||||| ||||||||| |||||||
Sbjct: 488 caagctccaccagttcgg-aatcgaggggcgcaagg 522



to top

>gb|AY103994.1| Zea mays PCO089335 mRNA sequence
          Length = 730

 Score =  228 bits (115), Expect = 2e-56
 Identities = 226/263 (85%)
 Strand = Plus / Plus

                                                                       
Query: 53  atacccgatgagaaaatccgggaggcacttaaagttgtcctagatgtaagaaatcaacct 112
           ||||||||||| |||||  ||||||| || ||||||||| ||||   |||||| ||||||
Sbjct: 12  atacccgatgacaaaataagggaggcgctcaaagttgtcttagacccaagaaaccaacct 71

                                                                       
Query: 113 ctgcttattcactgcaagagaggcaagcaccgaactggatgcgtcgttggttgcatgagg 172
           ||||||||||| || ||||||||||||||||||||||| ||  | || || ||| |||||
Sbjct: 72  ctgcttattcattgtaagagaggcaagcaccgaactggttgtttggtcgggtgcttgagg 131

                                                                       
Query: 173 aagttgcagaaatggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcg 232
           ||| |||||||||||||| |||| || ||||| ||||||||||| ||||| || ||||||
Sbjct: 132 aagctgcagaaatggtgcttgtcttcagtcttcgacgagtaccatcgctttgccgctgcg 191

                                                                       
Query: 233 aaagtgaggagcaccgacctgagattcatggagctgttcgacgtcgcgagcttgaagcac 292
           |||| | | | ||| |||| ||||||||||||||||||||||||| | ||||||||||||
Sbjct: 192 aaagcgcgaatcactgaccagagattcatggagctgttcgacgtctcaagcttgaagcac 251

                                  
Query: 293 ctgaccacctcacattgttaacc 315
           |||||  ||||||||||||||||
Sbjct: 252 ctgacaccctcacattgttaacc 274



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 389 actgaaccgactcagcagtgaataatttt 417
           |||||||||| ||||| ||||||||||||
Sbjct: 342 actgaaccgattcagccgtgaataatttt 370



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  167 bits (84), Expect = 5e-38
 Identities = 156/180 (86%)
 Strand = Plus / Plus

                                                                           
Query: 138     agcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcat 197
               ||||||| || || |||||||| || ||| |||||||| | |||||||||||| |||| |
Sbjct: 5569364 agcaccgcaccggctgcgtcgtggggtgcttgaggaagcttcagaaatggtgcttgtctt 5569423

                                                                           
Query: 198     cggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcaccgacctgagat 257
               | || || |||||||||||||||||||| |||||||| | |||||||||||| | |||||
Sbjct: 5569424 cagtgttcgacgagtaccagcgcttcgccgctgcgaaggcgaggagcaccgatcagagat 5569483

                                                                           
Query: 258     tcatggagctgttcgacgtcgcgagcttgaagcacctgaccacctcacattgttaaccaa 317
               ||||||||||||||||| || | |||||||||||||||||  | ||||||||||||||||
Sbjct: 5569484 tcatggagctgttcgacatctcaagcttgaagcacctgacagcttcacattgttaaccaa 5569543



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                           
Query: 486     ttgagagctctattttttccctgctcaggtccctgcagatcctaagaaccagaaagttgt 545
               ||||||| |||| ||||  |||||| || ||||||||||||||| |||||||| ||||||
Sbjct: 5569700 ttgagagttctagttttctcctgcttagctccctgcagatcctatgaaccagacagttgt 5569759

                                     
Query: 546     gggtaggattgcaagangtttt 567
               |||||||||||||||| |||||
Sbjct: 5569760 gggtaggattgcaagaggtttt 5569781



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                         
Query: 98      gtaagaaatcaacctctgcttattcactgcaagagaggcaag 139
               |||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 5569216 gtaaaaaaccaacctctgcttattcactgcaagagaggcaag 5569257



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                   
Query: 400     tcagcagtgaataatttttggaacccgtagaatgaa 435
               |||||||||||||||||| |||||||||||||||||
Sbjct: 5569633 tcagcagtgaataatttt-ggaacccgtagaatgaa 5569667



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                   
Query: 1       caagctccaccagttcggnaatcgagggccgcaagg 36
               |||||||||||||||||| ||||||||| |||||||
Sbjct: 5566443 caagctccaccagttcgg-aatcgaggggcgcaagg 5566477



to top

>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0664C05
          Length = 165354

 Score =  167 bits (84), Expect = 5e-38
 Identities = 156/180 (86%)
 Strand = Plus / Plus

                                                                          
Query: 138    agcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcat 197
              ||||||| || || |||||||| || ||| |||||||| | |||||||||||| |||| |
Sbjct: 116272 agcaccgcaccggctgcgtcgtggggtgcttgaggaagcttcagaaatggtgcttgtctt 116331

                                                                          
Query: 198    cggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcaccgacctgagat 257
              | || || |||||||||||||||||||| |||||||| | |||||||||||| | |||||
Sbjct: 116332 cagtgttcgacgagtaccagcgcttcgccgctgcgaaggcgaggagcaccgatcagagat 116391

                                                                          
Query: 258    tcatggagctgttcgacgtcgcgagcttgaagcacctgaccacctcacattgttaaccaa 317
              ||||||||||||||||| || | |||||||||||||||||  | ||||||||||||||||
Sbjct: 116392 tcatggagctgttcgacatctcaagcttgaagcacctgacagcttcacattgttaaccaa 116451



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                          
Query: 486    ttgagagctctattttttccctgctcaggtccctgcagatcctaagaaccagaaagttgt 545
              ||||||| |||| ||||  |||||| || ||||||||||||||| |||||||| ||||||
Sbjct: 116608 ttgagagttctagttttctcctgcttagctccctgcagatcctatgaaccagacagttgt 116667

                                    
Query: 546    gggtaggattgcaagangtttt 567
              |||||||||||||||| |||||
Sbjct: 116668 gggtaggattgcaagaggtttt 116689



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                        
Query: 98     gtaagaaatcaacctctgcttattcactgcaagagaggcaag 139
              |||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 116124 gtaaaaaaccaacctctgcttattcactgcaagagaggcaag 116165



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                  
Query: 400    tcagcagtgaataatttttggaacccgtagaatgaa 435
              |||||||||||||||||| |||||||||||||||||
Sbjct: 116541 tcagcagtgaataatttt-ggaacccgtagaatgaa 116575



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                  
Query: 1      caagctccaccagttcggnaatcgagggccgcaagg 36
              |||||||||||||||||| ||||||||| |||||||
Sbjct: 113351 caagctccaccagttcgg-aatcgaggggcgcaagg 113385



to top

>gb|AF057522.1|AF057522 Zea mays hypoxically induced transcript 2 (HIT2) mRNA, partial cds
          Length = 312

 Score =  159 bits (80), Expect = 1e-35
 Identities = 176/208 (84%)
 Strand = Plus / Plus

                                                                       
Query: 68  atccgggaggcacttaaagttgtcctagatgtaagaaatcaacctctgcttattcactgc 127
           ||||||||||| || ||||||||||| || |||||||| || ||  | || || ||||||
Sbjct: 93  atccgggaggcgctcaaagttgtccttgacgtaagaaaccagccggtcctcatccactgc 152

                                                                       
Query: 128 aagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatgg 187
           ||||||||| ||||||| ||||| |||||||| || ||| |||||||| ||||||| |||
Sbjct: 153 aagagaggcgagcaccggactggctgcgtcgtcggatgcctgaggaagctgcagaagtgg 212

                                                                       
Query: 188 tgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcacc 247
           |||||||| || || || |||||||||| || |||||| || ||||| | ||||| ||||
Sbjct: 213 tgcctgtcctccgtgttcgacgagtacctgcacttcgcggcggcgaaggcgaggaccacc 272

                                       
Query: 248 gacctgagattcatggagctgttcgacg 275
           |||| ||| |||||||||||||||||||
Sbjct: 273 gaccagaggttcatggagctgttcgacg 300



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 145/178 (81%)
 Strand = Plus / Minus

                                                                            
Query: 138      agcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcat 197
                ||||||| ||||| ||||||||||| ||| |||| ||||||||||||||||||||  | |
Sbjct: 32557030 agcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaactt 32556971

                                                                            
Query: 198      cggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcaccgacctgagat 257
                | || || |||||||||||||  || || || ||||| | ||| || || || | |||||
Sbjct: 32556970 cagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagat 32556911

                                                                          
Query: 258      tcatggagctgttcgacgtcgcgagcttgaagcacctgaccacctcacattgttaacc 315
                ||||||||||||| |||    | ||||||| |||||||||  ||||||| ||||||||
Sbjct: 32556910 tcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaacc 32556853



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 98       gtaagaaatcaacctctgcttattcactgcaagagaggcaag 139
                ||||| ||||||||  |||| || ||||||||||||||||||
Sbjct: 32557173 gtaaggaatcaaccggtgctcatccactgcaagagaggcaag 32557132



to top

>dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1353_F08
          Length = 101988

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 145/178 (81%)
 Strand = Plus / Minus

                                                                         
Query: 138   agcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcat 197
             ||||||| ||||| ||||||||||| ||| |||| ||||||||||||||||||||  | |
Sbjct: 54003 agcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaactt 53944

                                                                         
Query: 198   cggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcaccgacctgagat 257
             | || || |||||||||||||  || || || ||||| | ||| || || || | |||||
Sbjct: 53943 cagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagat 53884

                                                                       
Query: 258   tcatggagctgttcgacgtcgcgagcttgaagcacctgaccacctcacattgttaacc 315
             ||||||||||||| |||    | ||||||| |||||||||  ||||||| ||||||||
Sbjct: 53883 tcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaacc 53826



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 98    gtaagaaatcaacctctgcttattcactgcaagagaggcaag 139
             ||||| ||||||||  |||| || ||||||||||||||||||
Sbjct: 54146 gtaaggaatcaaccggtgctcatccactgcaagagaggcaag 54105



to top

>gb|AY789640.1| Capsicum annuum tyrosine specific protein phosphatase family
           protein mRNA, complete cds
          Length = 1319

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 98/118 (83%)
 Strand = Plus / Plus

                                                                       
Query: 119 attcactgcaagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttg 178
           |||||||||||  | || |||||||||||||| ||| | ||||| ||| |||| || |||
Sbjct: 557 attcactgcaaacgcgggaagcaccgaactgggtgccttgttggatgcttgagaaaattg 616

                                                                     
Query: 179 cagaaatggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaag 236
           ||||| ||||||||  |||| || |||||||||||||| || || |||||||| ||||
Sbjct: 617 cagaagtggtgcctaacatctgtgtttgacgagtaccaacgttttgctgctgccaaag 674



to top

>ref|XM_450177.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1366

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 95/114 (83%)
 Strand = Plus / Plus

                                                                       
Query: 67  aatccgggaggcacttaaagttgtcctagatgtaagaaatcaacctctgcttattcactg 126
           |||||| ||||| || |||||||| ||||||||   |||||| ||  |||||||||||||
Sbjct: 615 aatccgtgaggctctaaaagttgtgctagatgtggcaaatcacccggtgcttattcactg 674

                                                                 
Query: 127 caagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttgca 180
           |||| | || ||||| |||||||| || || ||||||||| ||||||| |||||
Sbjct: 675 caagcgtggaaagcatcgaactggctgtgtggttggttgcttgaggaaattgca 728



to top

>dbj|AK121831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099M08, full
           insert sequence
          Length = 1365

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 95/114 (83%)
 Strand = Plus / Plus

                                                                       
Query: 67  aatccgggaggcacttaaagttgtcctagatgtaagaaatcaacctctgcttattcactg 126
           |||||| ||||| || |||||||| ||||||||   |||||| ||  |||||||||||||
Sbjct: 615 aatccgtgaggctctaaaagttgtgctagatgtggcaaatcacccggtgcttattcactg 674

                                                                 
Query: 127 caagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttgca 180
           |||| | || ||||| |||||||| || || ||||||||| ||||||| |||||
Sbjct: 675 caagcgtggaaagcatcgaactggctgtgtggttggttgcttgaggaaattgca 728



to top

>ref|XM_468013.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 600

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Plus

                                                                       
Query: 139 gcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcatc 198
           |||||| ||||| ||||||||||| ||| |||| ||||||||||||||||||||  | ||
Sbjct: 490 gcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttc 549

                               
Query: 199 ggtctttgacgagtaccagc 218
            || || |||||||||||||
Sbjct: 550 agttttcgacgagtaccagc 569



to top

>emb|CR931731.1| Medicago truncatula chromosome 5 clone mth2-83l19, COMPLETE SEQUENCE
          Length = 120299

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                         
Query: 177   tgcagaaatggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaag 236
             |||| ||||||||| |||| || || |||||||||||||||||||| || || |||||||
Sbjct: 86964 tgcaaaaatggtgcttgtcgtctgtttttgacgagtaccagcgctttgcagcagcgaaag 87023



to top

>gb|AF366443.1|AF366443 Allium cepa clone AGF096 maintainer line sequence
          Length = 858

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 185 tggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaag 236
           |||||||| || ||||| |||||||||||||| ||||| |||||||| ||||
Sbjct: 375 tggtgcctttcttcggtttttgacgagtaccatcgctttgctgctgccaaag 324



to top

>gb|AY103919.1| Zea mays PCO099246 mRNA sequence
          Length = 1461

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                     
Query: 238 gaggagcaccgacctgagattcatggagctgttcgacgtcgcgagcttgaagcacctg 295
           ||||||||| |||| ||| ||||||||||||||||| |   ||||||||| |||||||
Sbjct: 147 gaggagcactgaccagaggttcatggagctgttcgatgcttcgagcttgacgcacctg 90



to top

>ref|NM_100379.2| Arabidopsis thaliana phosphoprotein phosphatase AT1G05000 mRNA,
           complete cds
          Length = 1104

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                      
Query: 158 gttggttgcatgaggaagttgcagaaatggtgcctgtcatcggtctttgacgagtacca 216
           ||||||||| |||||||| | |||||||||||  || ||||| | || |||||||||||
Sbjct: 548 gttggttgcttgaggaagctccagaaatggtgtttgacatcgatattcgacgagtacca 606



to top

>gb|AC005322.2|T7A14 Arabidopsis thaliana chromosome 1 BAC T7A14 sequence, complete sequence
          Length = 54157

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 158   gttggttgcatgaggaagttgcagaaatggtgcctgtcatcggtctttgacgagtacca 216
             ||||||||| |||||||| | |||||||||||  || ||||| | || |||||||||||
Sbjct: 48326 gttggttgcttgaggaagctccagaaatggtgtttgacatcgatattcgacgagtacca 48268



to top

>gb|BT005210.1| Arabidopsis thaliana At1g05000 mRNA, complete cds
          Length = 648

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                      
Query: 158 gttggttgcatgaggaagttgcagaaatggtgcctgtcatcggtctttgacgagtacca 216
           ||||||||| |||||||| | |||||||||||  || ||||| | || |||||||||||
Sbjct: 481 gttggttgcttgaggaagctccagaaatggtgtttgacatcgatattcgacgagtacca 539



to top

>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 204     ttgacgagtaccagcgcttcgc 225
               ||||||||||||||||||||||
Sbjct: 1849978 ttgacgagtaccagcgcttcgc 1849999



to top

>gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166966

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 169   gaggaagttgcagaaatggtgcctg 193
             ||||||||||||||||||| |||||
Sbjct: 10634 gaggaagttgcagaaatggggcctg 10610



to top

>emb|AJ414553.1|BPR414553 Beta procumbens repeat element AluI family pAp22, clone pAp22
          Length = 582

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 461 gcaaaacagaagattgaagaa 481
           |||||||||||||||||||||
Sbjct: 266 gcaaaacagaagattgaagaa 286



to top

>emb|AJ438178.1|BPR438178 Beta procumbens retrotransposon Athila-like Ty3-gypsy
          Length = 2110

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 461 gcaaaacagaagattgaagaa 481
           |||||||||||||||||||||
Sbjct: 266 gcaaaacagaagattgaagaa 286



to top

>ref|NM_128856.3| Arabidopsis thaliana catalytic/ phosphoprotein phosphatase
           AT2G32960 mRNA, complete cds
          Length = 1229

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 59/72 (81%)
 Strand = Plus / Plus

                                                                       
Query: 119 attcactgcaagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttg 178
           ||||| |||||  ||||||||||| |||| || ||  | ||||| |||||||||||  | 
Sbjct: 777 attcattgcaaacgaggcaagcacagaaccgggtgtcttgttgggtgcatgaggaaactc 836

                       
Query: 179 cagaaatggtgc 190
           ||||||||||||
Sbjct: 837 cagaaatggtgc 848



to top

>gb|AC160526.13| Mus musculus chromosome 8, clone RP24-191C23, complete sequence
          Length = 174746

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    agcttgaagcacctgaccac 300
              ||||||||||||||||||||
Sbjct: 125811 agcttgaagcacctgaccac 125792



to top

>gb|BC068781.1| Xenopus laevis hypothetical protein MGC81311, mRNA (cDNA clone
            MGC:81311 IMAGE:6632546), complete cds
          Length = 3794

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 465  aacagaagattgaagaagaa 484
            ||||||||||||||||||||
Sbjct: 2782 aacagaagattgaagaagaa 2801



to top

>ref|XM_746651.1| Aspergillus fumigatus Af293 SNF2 family helicase (Afu4g10830)
           partial mRNA
          Length = 3543

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 72  gggaggcacttaaagttgtc 91
           ||||||||||||||||||||
Sbjct: 425 gggaggcacttaaagttgtc 444



to top

>gb|BC043764.1| Xenopus laevis similar to serine/threonine protein kinase TAO1, mRNA
            (cDNA clone MGC:52943 IMAGE:4930266), complete cds
          Length = 3489

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 465  aacagaagattgaagaagaa 484
            ||||||||||||||||||||
Sbjct: 2890 aacagaagattgaagaagaa 2909



to top

>gb|BT006379.1| Arabidopsis thaliana At2g32960 gene, complete cds
          Length = 774

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 59/72 (81%)
 Strand = Plus / Plus

                                                                       
Query: 119 attcactgcaagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttg 178
           ||||| |||||  ||||||||||| |||| || ||  | ||||| |||||||||||  | 
Sbjct: 568 attcattgcaaacgaggcaagcacagaaccgggtgtcttgttgggtgcatgaggaaactc 627

                       
Query: 179 cagaaatggtgc 190
           ||||||||||||
Sbjct: 628 cagaaatggtgc 639



to top

>gb|AY786992.1| Azospirillum lipoferum nitrogenase subunit NifH (nifH) gene, partial
            cds; DraT (draT), DraG (draG), ArsC, Glutamine
            amidotransferases class-II (YafJ-like), AcpD, nucleoside
            phosphorylase, signal recognition particle GTPase, and
            MiaB (miaB) genes, complete cds; and DapF (dapF) gene,
            partial cds
          Length = 11856

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 334  cgcccccgccgtcctcccag 353
            ||||||||||||||||||||
Sbjct: 2452 cgcccccgccgtcctcccag 2433



to top

>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 462    caaaacagaagattgaagaa 481
              ||||||||||||||||||||
Sbjct: 720375 caaaacagaagattgaagaa 720356


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,156,347
Number of Sequences: 3902068
Number of extensions: 5156347
Number of successful extensions: 98119
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97955
Number of HSP's gapped (non-prelim): 156
length of query: 587
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 564
effective length of database: 17,143,297,704
effective search space: 9668819905056
effective search space used: 9668819905056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top