ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8o05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK064856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H11, full insert sequence Length = 1588 Score = 460 bits (232), Expect = e-126 Identities = 464/539 (86%), Gaps = 2/539 (0%) Strand = Plus / Plus Query: 1 tttcaattaataaagttggnacatgcactacatgnaacatgatcctgtgttcaaaaagtt 60 ||||||||||||||||||| || || |||||| ||| ||| ||||||||||||||||| Sbjct: 889 tttcaattaataaagttggg-cacgcgttacatg-aacttgaccctgtgttcaaaaagtt 946 Query: 61 tgctttctcggagaatatttctagcctgttctcttctttagggtacaagagacctgcagt 120 |||| |||||| |||| ||||| |||||||||||| | ||||| ||||||||||| Sbjct: 947 ctcttttggagagaatgtttccagcctattctcttctttacgctacaaaagacctgcagt 1006 Query: 121 tattcaatctatgtacatctttaagcaaccaggcattggtggcgaggtggtgccacacca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1007 tattcaatctatgtacatctttaagcaaccaggcattggtggcgaggtggtgccacacca 1066 Query: 181 ggataatacatttctttatacagagcctctgtcctgcacaggattgtggcttgcgcttga 240 |||||||||||| || |||||| | |||| || |||||||| ||||||||||| || || Sbjct: 1067 ggataatacattcctatatacaaaccctccatcatgcacagggttgtggcttgcactcga 1126 Query: 241 agatgcaacaacaaccaatggttgcctatgggcaattcccggatcacataaaaatggttt 300 |||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||| | Sbjct: 1127 agatgcgacaaaaacgaatggttgcctatgggcaattcctggatcacataaaaatggtct 1186 Query: 301 gaaaaggcgaatgatcagggatgaaaatggcactcattttgatcgtccctccccgcttta 360 |||||||||||||||||| |||||||||| ||||||||||||| ||| || || || Sbjct: 1187 gaaaaggcgaatgatcagagatgaaaatgatactcattttgatcatccttcgccaaccta 1246 Query: 361 tgatcagaaagagtttgtaccactggaaatgaaatcaggtgactttgttgttattcatgg 420 ||||| |||||| ||||| ||| | ||| | || |||||||| || || ||||||||||| Sbjct: 1247 tgatctgaaagaatttgtgccattagaagtaaagtcaggtgatttggtggttattcatgg 1306 Query: 421 tgatcttgtacatcagagcttcgagaacctttctccagtctcaagacatgcactgagctt 480 ||||||||||| |||||||| || || ||||||| || |||||||||||||||||||| Sbjct: 1307 agatcttgtacaccagagctttgaaaatctttctctggtgtcaagacatgcactgagctt 1366 Query: 481 gcatgtagttgacatggaaggatgtaaatggtccaaggataactggatacagaggaaaa 539 |||||| |||| | ||||||||| |||||||||| | |||||| |||| ||||||| Sbjct: 1367 acatgtaattgataccgaaggatgtgaatggtccaaacaaaactggttacaaaggaaaa 1425
>ref|XM_469483.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1102 Score = 420 bits (212), Expect = e-114 Identities = 425/496 (85%) Strand = Plus / Plus Query: 44 cctgtgttcaaaaagtttgctttctcggagaatatttctagcctgttctcttctttaggg 103 ||||||||||||||||| |||| | |||| |||| |||||||||||||||||| | Sbjct: 374 cctgtgttcaaaaagttctcttttggagcgaatgtttccagcctgttctcttctttacgc 433 Query: 104 tacaagagacctgcagttattcaatctatgtacatctttaagcaaccaggcattggtggc 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 434 tacaagagacctgcagttattcaatctatgtacatctttaagcaaccaggcattggtggc 493 Query: 164 gaggtggtgccacaccaggataatacatttctttatacagagcctctgtcctgcacagga 223 |||||||| |||||||||||||||||||| || |||||||| |||| || |||||||| Sbjct: 494 gaggtggtaccacaccaggataatacattcctatatacagaccctccatcgtgcacaggg 553 Query: 224 ttgtggcttgcgcttgaagatgcaacaacaaccaatggttgcctatgggcaattcccgga 283 |||||||||| || |||||||| |||| ||| ||||||||||| ||||||||||| ||| Sbjct: 554 ctgtggcttgcactcgaagatgcgacaaaaacgaatggttgcctttgggcaattcctgga 613 Query: 284 tcacataaaaatggtttgaaaaggcgaatgatcagggatgaaaatggcactcattttgat 343 |||||||||||||| ||||||||||||||||||| ||||||| | |||||||||||| Sbjct: 614 tcacataaaaatggcctgaaaaggcgaatgatcagagatgaaatcgatactcattttgat 673 Query: 344 cgtccctccccgctttatgatcagaaagagtttgtaccactggaaatgaaatcaggtgac 403 | ||| || || ||||||| |||||| ||||| || | ||| | || |||||||| Sbjct: 674 catccttcgccaacctatgatctgaaagaatttgtgcccttagaagtaaagtcaggtgat 733 Query: 404 tttgttgttattcatggtgatcttgtacatcagagcttcgagaacctttctccagtctca 463 || || ||||||||||| |||||| |||| |||||||| || || |||||||| || ||| Sbjct: 734 ttggtggttattcatggagatcttatacaccagagctttgaaaatctttctccggtgtca 793 Query: 464 agacatgcactgagcttgcatgtagttgacatggaaggatgtaaatggtccaaggataac 523 ||||||||||||||||| |||||| |||| | ||||||||| ||||||||||| | ||| Sbjct: 794 agacatgcactgagcttacatgtaattgataccgaaggatgtgaatggtccaagcaaaac 853 Query: 524 tggatacagaggaaaa 539 ||| |||| ||||||| Sbjct: 854 tggttacaaaggaaaa 869
>dbj|AK103821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147H12, full insert sequence Length = 1230 Score = 412 bits (208), Expect = e-112 Identities = 424/496 (85%) Strand = Plus / Plus Query: 44 cctgtgttcaaaaagtttgctttctcggagaatatttctagcctgttctcttctttaggg 103 ||||||||||||||||| |||| | |||| |||| |||||||||||||||||| | Sbjct: 387 cctgtgttcaaaaagttctcttttggagcgaatgtttccagcctgttctcttctttacgc 446 Query: 104 tacaagagacctgcagttattcaatctatgtacatctttaagcaaccaggcattggtggc 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 tacaagagacctgcagttattcaatctatgtacatctttaagcaaccaggcattggtggc 506 Query: 164 gaggtggtgccacaccaggataatacatttctttatacagagcctctgtcctgcacagga 223 |||||||| |||||||||||||||||||| || |||||||| |||| || ||||| || Sbjct: 507 gaggtggtaccacaccaggataatacattcctatatacagaccctccatcgtgcactggg 566 Query: 224 ttgtggcttgcgcttgaagatgcaacaacaaccaatggttgcctatgggcaattcccgga 283 |||||||||| || |||||||| |||| ||| ||||||||||| ||||||||||| ||| Sbjct: 567 ctgtggcttgcactcgaagatgcgacaaaaacgaatggttgcctttgggcaattcctgga 626 Query: 284 tcacataaaaatggtttgaaaaggcgaatgatcagggatgaaaatggcactcattttgat 343 |||||||||||||| ||||||||||||||||||| ||||||| | |||||||||||| Sbjct: 627 tcacataaaaatggcctgaaaaggcgaatgatcagagatgaaatcgatactcattttgat 686 Query: 344 cgtccctccccgctttatgatcagaaagagtttgtaccactggaaatgaaatcaggtgac 403 | ||| || || ||||||| |||||| ||||| || | ||| | || |||||||| Sbjct: 687 catccttcgccaacctatgatctgaaagaatttgtgcccttagaagtaaagtcaggtgat 746 Query: 404 tttgttgttattcatggtgatcttgtacatcagagcttcgagaacctttctccagtctca 463 || || ||||||||||| |||||| |||| |||||||| || || |||||||| || ||| Sbjct: 747 ttggtggttattcatggagatcttatacaccagagctttgaaaatctttctccggtgtca 806 Query: 464 agacatgcactgagcttgcatgtagttgacatggaaggatgtaaatggtccaaggataac 523 ||||||||||||||||| |||||| |||| | ||||||||| ||||||||||| | ||| Sbjct: 807 agacatgcactgagcttacatgtaattgataccgaaggatgtgaatggtccaagcaaaac 866 Query: 524 tggatacagaggaaaa 539 ||| |||| ||||||| Sbjct: 867 tggttacaaaggaaaa 882
>dbj|AK104750.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F05, full insert sequence Length = 1089 Score = 369 bits (186), Expect = 7e-99 Identities = 418/496 (84%), Gaps = 7/496 (1%) Strand = Plus / Plus Query: 44 cctgtgttcaaaaagtttgctttctcggagaatatttctagcctgttctcttctttaggg 103 ||||||||||||||||| |||| | |||| |||| |||||||||||||||||| | Sbjct: 363 cctgtgttcaaaaagttctcttttggagcgaatgtttccagcctgttctcttctttacgc 422 Query: 104 tacaagagacctgcagttattcaatctatgtacatctttaagcaaccaggcattggtggc 163 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 423 tacaagagacctgcagttattcaatctatgtacatctttaag-------gcattggtggc 475 Query: 164 gaggtggtgccacaccaggataatacatttctttatacagagcctctgtcctgcacagga 223 |||||||| |||||||||||||||||||| || |||||||| |||| || |||||||| Sbjct: 476 gaggtggtaccacaccaggataatacattcctatatacagaccctccatcgtgcacaggg 535 Query: 224 ttgtggcttgcgcttgaagatgcaacaacaaccaatggttgcctatgggcaattcccgga 283 |||||||||| || |||||||| |||| ||| ||||||||||| ||||||||||| ||| Sbjct: 536 ctgtggcttgcactcgaagatgcgacaaaaacgaatggttgcctttgggcaattcctgga 595 Query: 284 tcacataaaaatggtttgaaaaggcgaatgatcagggatgaaaatggcactcattttgat 343 |||||||||||||| ||||||||||||||||||| ||||||| | |||||||||||| Sbjct: 596 tcacataaaaatggcctgaaaaggcgaatgatcagagatgaaatcgatactcattttgat 655 Query: 344 cgtccctccccgctttatgatcagaaagagtttgtaccactggaaatgaaatcaggtgac 403 | ||| || || ||||||| |||||| ||||| || | ||| | || |||||||| Sbjct: 656 catccttcgccaacctatgatctgaaagaatttgtgcccttagaagtaaagtcaggtgat 715 Query: 404 tttgttgttattcatggtgatcttgtacatcagagcttcgagaacctttctccagtctca 463 || || ||||||||||| |||||| |||| |||||||| || || |||||||| || ||| Sbjct: 716 ttggtggttattcatggagatcttatacaccagagctttgaaaatctttctccggtgtca 775 Query: 464 agacatgcactgagcttgcatgtagttgacatggaaggatgtaaatggtccaaggataac 523 ||||||||||||||||| |||||| |||| | ||||||||| ||||||||||| | ||| Sbjct: 776 agacatgcactgagcttacatgtaattgataccgaaggatgtgaatggtccaagcaaaac 835 Query: 524 tggatacagaggaaaa 539 ||| |||| ||||||| Sbjct: 836 tggttacaaaggaaaa 851
>dbj|AK060138.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-E10, full insert sequence Length = 1089 Score = 369 bits (186), Expect = 7e-99 Identities = 418/496 (84%), Gaps = 7/496 (1%) Strand = Plus / Plus Query: 44 cctgtgttcaaaaagtttgctttctcggagaatatttctagcctgttctcttctttaggg 103 ||||||||||||||||| |||| | |||| |||| |||||||||||||||||| | Sbjct: 363 cctgtgttcaaaaagttctcttttggagcgaatgtttccagcctgttctcttctttacgc 422 Query: 104 tacaagagacctgcagttattcaatctatgtacatctttaagcaaccaggcattggtggc 163 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 423 tacaagagacctgcagttattcaatctatgtacatctttaag-------gcattggtggc 475 Query: 164 gaggtggtgccacaccaggataatacatttctttatacagagcctctgtcctgcacagga 223 |||||||| |||||||||||||||||||| || |||||||| |||| || |||||||| Sbjct: 476 gaggtggtaccacaccaggataatacattcctatatacagaccctccatcgtgcacaggg 535 Query: 224 ttgtggcttgcgcttgaagatgcaacaacaaccaatggttgcctatgggcaattcccgga 283 |||||||||| || |||||||| |||| ||| ||||||||||| ||||||||||| ||| Sbjct: 536 ctgtggcttgcactcgaagatgcgacaaaaacgaatggttgcctttgggcaattcctgga 595 Query: 284 tcacataaaaatggtttgaaaaggcgaatgatcagggatgaaaatggcactcattttgat 343 |||||||||||||| ||||||||||||||||||| ||||||| | |||||||||||| Sbjct: 596 tcacataaaaatggcctgaaaaggcgaatgatcagagatgaaatcgatactcattttgat 655 Query: 344 cgtccctccccgctttatgatcagaaagagtttgtaccactggaaatgaaatcaggtgac 403 | ||| || || ||||||| |||||| ||||| || | ||| | || |||||||| Sbjct: 656 catccttcgccaacctatgatctgaaagaatttgtgcccttagaagtaaagtcaggtgat 715 Query: 404 tttgttgttattcatggtgatcttgtacatcagagcttcgagaacctttctccagtctca 463 || || ||||||||||| |||||| |||| |||||||| || || |||||||| || ||| Sbjct: 716 ttggtggttattcatggagatcttatacaccagagctttgaaaatctttctccggtgtca 775 Query: 464 agacatgcactgagcttgcatgtagttgacatggaaggatgtaaatggtccaaggataac 523 ||||||||||||||||| |||||| |||| | ||||||||| ||||||||||| | ||| Sbjct: 776 agacatgcactgagcttacatgtaattgataccgaaggatgtgaatggtccaagcaaaac 835 Query: 524 tggatacagaggaaaa 539 ||| |||| ||||||| Sbjct: 836 tggttacaaaggaaaa 851
>gb|AY112156.1| Zea mays CL1582_10 mRNA sequence Length = 891 Score = 218 bits (110), Expect = 2e-53 Identities = 321/393 (81%) Strand = Plus / Minus Query: 176 caccaggataatacatttctttatacagagcctctgtcctgcacaggattgtggcttgcg 235 ||||||||||||||||| ||||| || || ||| | |||||||| ||||||||||| Sbjct: 719 caccaggataatacattcctttacacggaaccttgaacatgcacagggttgtggcttgca 660 Query: 236 cttgaagatgcaacaacaaccaatggttgcctatgggcaattcccggatcacataaaaat 295 |||||||||||||||| | |||||||||||| ||||| ||||| || |||||| Sbjct: 659 cttgaagatgcaacaatcaacaatggttgcctgtgggccattccaggctcacatnnnnng 600 Query: 296 ggtttgaaaaggcgaatgatcagggatgaaaatggcactcattttgatcgtccctccccg 355 |||||| ||||| |||||||| ||||||||||| || ||||||||| | |||||||| Sbjct: 599 ggtttggtgaggcgtatgatcagagatgaaaatggtacacattttgattgcccctcccca 540 Query: 356 ctttatgatcagaaagagtttgtaccactggaaatgaaatcaggtgactttgttgttatt 415 ||||| |||||||| |||||||| |||||| | ||||| |||| || || ||||| Sbjct: 539 gcctatgaccagaaagaatttgtaccgctggaagtaaaatctggtgctttggtggttatc 480 Query: 416 catggtgatcttgtacatcagagcttcgagaacctttctccagtctcaagacatgcactg 475 ||||| |||||| |||||||||| || ||||| |||||||| | |||||||||||| | Sbjct: 479 catggagatcttatacatcagagttttgagaatctttctcctgcgtcaagacatgcattc 420 Query: 476 agcttgcatgtagttgacatggaaggatgtaaatggtccaaggataactggatacagagg 535 ||||| |||||||| || | |||||||||||||||||| | || ||||||||||| ||| Sbjct: 419 agcttacatgtagtggatactgaaggatgtaaatggtccgaagacaactggatacaaagg 360 Query: 536 aaaactgcgcccgaaccactgtatgtgtcttag 568 ||||| || || ||||| || |||||||||||| Sbjct: 359 aaaacggcccctgaaccgctctatgtgtcttag 327 Score = 83.8 bits (42), Expect = 6e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 58 gtttgctttctcggagaatatttctagcctgttctcttctttagggtacaagagacctgc 117 |||| |||||||||||| | || | ||| ||||||| || ||||| |||||||| || || Sbjct: 837 gttttctttctcggagagtgttgcaagcttgttctcctcgttaggctacaagaggcccgc 778 Query: 118 agttattcaatctatgtacatctttaagcaacca 151 ||| |||||||| ||||||||||||||||||||| Sbjct: 777 agtcattcaatccatgtacatctttaagcaacca 744
>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01, complete sequence Length = 146432 Score = 186 bits (94), Expect = 5e-44 Identities = 136/150 (90%) Strand = Plus / Minus Query: 144 agcaaccaggcattggtggcgaggtggtgccacaccaggataatacatttctttatacag 203 ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 61461 agcaaccaggcattggtggcgaggtggtgccacaccaggataatacattcctatatacaa 61402 Query: 204 agcctctgtcctgcacaggattgtggcttgcgcttgaagatgcaacaacaaccaatggtt 263 | |||| || |||||||| ||||||||||| || |||||||| |||| ||| ||||||| Sbjct: 61401 accctccatcatgcacagggttgtggcttgcactcgaagatgcgacaaaaacgaatggtt 61342 Query: 264 gcctatgggcaattcccggatcacataaaa 293 |||||||||||||||| ||||||||||||| Sbjct: 61341 gcctatgggcaattcctggatcacataaaa 61312 Score = 107 bits (54), Expect = 4e-20 Identities = 90/102 (88%) Strand = Plus / Minus Query: 44 cctgtgttcaaaaagtttgctttctcggagaatatttctagcctgttctcttctttaggg 103 ||||||||||||||||| |||| |||||| |||| ||||| |||||||||||| | Sbjct: 61642 cctgtgttcaaaaagttctcttttggagagaatgtttccagcctattctcttctttacgc 61583 Query: 104 tacaagagacctgcagttattcaatctatgtacatctttaag 145 ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 61582 tacaaaagacctgcagttattcaatctatgtacatctttaag 61541 Score = 97.6 bits (49), Expect = 4e-17 Identities = 121/145 (83%) Strand = Plus / Minus Query: 294 atggtttgaaaaggcgaatgatcagggatgaaaatggcactcattttgatcgtccctccc 353 ||||| ||||||||||||||||||| |||||||||| ||||||||||||| ||| || | Sbjct: 61218 atggtctgaaaaggcgaatgatcagagatgaaaatgatactcattttgatcatccttcgc 61159 Query: 354 cgctttatgatcagaaagagtttgtaccactggaaatgaaatcaggtgactttgttgtta 413 | ||||||| |||||| ||||| ||| | ||| | || |||||||| || || |||| Sbjct: 61158 caacctatgatctgaaagaatttgtgccattagaagtaaagtcaggtgatttggtggtta 61099 Query: 414 ttcatggtgatcttgtacatcagag 438 ||||||| ||||||||||| ||||| Sbjct: 61098 ttcatggagatcttgtacaccagag 61074 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 461 tcaagacatgcactgagcttgcatgtagttgacatggaaggatgtaaatggtccaa 516 |||||||||||||||||||| |||||| |||| | ||||||||| |||||||||| Sbjct: 60969 tcaagacatgcactgagcttacatgtaattgataccgaaggatgtgaatggtccaa 60914
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 186 bits (94), Expect = 5e-44 Identities = 136/150 (90%) Strand = Plus / Minus Query: 144 agcaaccaggcattggtggcgaggtggtgccacaccaggataatacatttctttatacag 203 ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 23129686 agcaaccaggcattggtggcgaggtggtgccacaccaggataatacattcctatatacaa 23129627 Query: 204 agcctctgtcctgcacaggattgtggcttgcgcttgaagatgcaacaacaaccaatggtt 263 | |||| || |||||||| ||||||||||| || |||||||| |||| ||| ||||||| Sbjct: 23129626 accctccatcatgcacagggttgtggcttgcactcgaagatgcgacaaaaacgaatggtt 23129567 Query: 264 gcctatgggcaattcccggatcacataaaa 293 |||||||||||||||| ||||||||||||| Sbjct: 23129566 gcctatgggcaattcctggatcacataaaa 23129537 Score = 107 bits (54), Expect = 4e-20 Identities = 90/102 (88%) Strand = Plus / Minus Query: 44 cctgtgttcaaaaagtttgctttctcggagaatatttctagcctgttctcttctttaggg 103 ||||||||||||||||| |||| |||||| |||| ||||| |||||||||||| | Sbjct: 23129867 cctgtgttcaaaaagttctcttttggagagaatgtttccagcctattctcttctttacgc 23129808 Query: 104 tacaagagacctgcagttattcaatctatgtacatctttaag 145 ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 23129807 tacaaaagacctgcagttattcaatctatgtacatctttaag 23129766 Score = 97.6 bits (49), Expect = 4e-17 Identities = 121/145 (83%) Strand = Plus / Minus Query: 294 atggtttgaaaaggcgaatgatcagggatgaaaatggcactcattttgatcgtccctccc 353 ||||| ||||||||||||||||||| |||||||||| ||||||||||||| ||| || | Sbjct: 23129443 atggtctgaaaaggcgaatgatcagagatgaaaatgatactcattttgatcatccttcgc 23129384 Query: 354 cgctttatgatcagaaagagtttgtaccactggaaatgaaatcaggtgactttgttgtta 413 | ||||||| |||||| ||||| ||| | ||| | || |||||||| || || |||| Sbjct: 23129383 caacctatgatctgaaagaatttgtgccattagaagtaaagtcaggtgatttggtggtta 23129324 Query: 414 ttcatggtgatcttgtacatcagag 438 ||||||| ||||||||||| ||||| Sbjct: 23129323 ttcatggagatcttgtacaccagag 23129299 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 461 tcaagacatgcactgagcttgcatgtagttgacatggaaggatgtaaatggtccaa 516 |||||||||||||||||||| |||||| |||| | ||||||||| |||||||||| Sbjct: 23129194 tcaagacatgcactgagcttacatgtaattgataccgaaggatgtgaatggtccaa 23129139
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 170 bits (86), Expect = 3e-39 Identities = 134/150 (89%) Strand = Plus / Minus Query: 144 agcaaccaggcattggtggcgaggtggtgccacaccaggataatacatttctttatacag 203 |||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| Sbjct: 28258703 agcaaccaggcattggtggcgaggtggtaccacaccaggataatacattcctatatacag 28258644 Query: 204 agcctctgtcctgcacaggattgtggcttgcgcttgaagatgcaacaacaaccaatggtt 263 | |||| || |||||||| |||||||||| || |||||||| |||| ||| ||||||| Sbjct: 28258643 accctccatcgtgcacagggctgtggcttgcactcgaagatgcgacaaaaacgaatggtt 28258584 Query: 264 gcctatgggcaattcccggatcacataaaa 293 |||| ||||||||||| ||||||||||||| Sbjct: 28258583 gcctttgggcaattcctggatcacataaaa 28258554 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Minus Query: 44 cctgtgttcaaaaagtttgctttctcggagaatatttctagcctgttctcttctttaggg 103 ||||||||||||||||| |||| | |||| |||| |||||||||||||||||| | Sbjct: 28258884 cctgtgttcaaaaagttctcttttggagcgaatgtttccagcctgttctcttctttacgc 28258825 Query: 104 tacaagagacctgcagttattcaatctatgtacatctttaag 145 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 28258824 tacaagagacctgcagttattcaatctatgtacatctttaag 28258783 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 449 ctttctccagtctcaagacatgcactgagcttgcatgtagttgacatggaaggatgtaaa 508 |||||||| || |||||||||||||||||||| |||||| |||| | ||||||||| || Sbjct: 28258223 ctttctccggtgtcaagacatgcactgagcttacatgtaattgataccgaaggatgtgaa 28258164 Query: 509 tggtccaaggataactgg 526 ||||||||| | |||||| Sbjct: 28258163 tggtccaagcaaaactgg 28258146 Score = 61.9 bits (31), Expect = 2e-06 Identities = 112/139 (80%) Strand = Plus / Minus Query: 300 tgaaaaggcgaatgatcagggatgaaaatggcactcattttgatcgtccctccccgcttt 359 ||||||||||||||||||| ||||||| | ||||||||||||| ||| || || | Sbjct: 28258454 tgaaaaggcgaatgatcagagatgaaatcgatactcattttgatcatccttcgccaacct 28258395 Query: 360 atgatcagaaagagtttgtaccactggaaatgaaatcaggtgactttgttgttattcatg 419 |||||| |||||| ||||| || | ||| | || |||||||| || || |||||||||| Sbjct: 28258394 atgatctgaaagaatttgtgcccttagaagtaaagtcaggtgatttggtggttattcatg 28258335 Query: 420 gtgatcttgtacatcagag 438 | |||||| |||| ||||| Sbjct: 28258334 gagatcttatacaccagag 28258316
>gb|AC087797.5| Oryza sativa chromosome 3 BAC OSJNBb0022E02 genomic sequence, complete sequence Length = 122497 Score = 170 bits (86), Expect = 3e-39 Identities = 134/150 (89%) Strand = Plus / Minus Query: 144 agcaaccaggcattggtggcgaggtggtgccacaccaggataatacatttctttatacag 203 |||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| Sbjct: 109844 agcaaccaggcattggtggcgaggtggtaccacaccaggataatacattcctatatacag 109785 Query: 204 agcctctgtcctgcacaggattgtggcttgcgcttgaagatgcaacaacaaccaatggtt 263 | |||| || |||||||| |||||||||| || |||||||| |||| ||| ||||||| Sbjct: 109784 accctccatcgtgcacagggctgtggcttgcactcgaagatgcgacaaaaacgaatggtt 109725 Query: 264 gcctatgggcaattcccggatcacataaaa 293 |||| ||||||||||| ||||||||||||| Sbjct: 109724 gcctttgggcaattcctggatcacataaaa 109695 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Minus Query: 44 cctgtgttcaaaaagtttgctttctcggagaatatttctagcctgttctcttctttaggg 103 ||||||||||||||||| |||| | |||| |||| |||||||||||||||||| | Sbjct: 110025 cctgtgttcaaaaagttctcttttggagcgaatgtttccagcctgttctcttctttacgc 109966 Query: 104 tacaagagacctgcagttattcaatctatgtacatctttaag 145 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 109965 tacaagagacctgcagttattcaatctatgtacatctttaag 109924 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 449 ctttctccagtctcaagacatgcactgagcttgcatgtagttgacatggaaggatgtaaa 508 |||||||| || |||||||||||||||||||| |||||| |||| | ||||||||| || Sbjct: 109364 ctttctccggtgtcaagacatgcactgagcttacatgtaattgataccgaaggatgtgaa 109305 Query: 509 tggtccaaggataactgg 526 ||||||||| | |||||| Sbjct: 109304 tggtccaagcaaaactgg 109287 Score = 61.9 bits (31), Expect = 2e-06 Identities = 112/139 (80%) Strand = Plus / Minus Query: 300 tgaaaaggcgaatgatcagggatgaaaatggcactcattttgatcgtccctccccgcttt 359 ||||||||||||||||||| ||||||| | ||||||||||||| ||| || || | Sbjct: 109595 tgaaaaggcgaatgatcagagatgaaatcgatactcattttgatcatccttcgccaacct 109536 Query: 360 atgatcagaaagagtttgtaccactggaaatgaaatcaggtgactttgttgttattcatg 419 |||||| |||||| ||||| || | ||| | || |||||||| || || |||||||||| Sbjct: 109535 atgatctgaaagaatttgtgcccttagaagtaaagtcaggtgatttggtggttattcatg 109476 Query: 420 gtgatcttgtacatcagag 438 | |||||| |||| ||||| Sbjct: 109475 gagatcttatacaccagag 109457
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 170 bits (86), Expect = 3e-39 Identities = 134/150 (89%) Strand = Plus / Minus Query: 144 agcaaccaggcattggtggcgaggtggtgccacaccaggataatacatttctttatacag 203 |||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| Sbjct: 28350027 agcaaccaggcattggtggcgaggtggtaccacaccaggataatacattcctatatacag 28349968 Query: 204 agcctctgtcctgcacaggattgtggcttgcgcttgaagatgcaacaacaaccaatggtt 263 | |||| || |||||||| |||||||||| || |||||||| |||| ||| ||||||| Sbjct: 28349967 accctccatcgtgcacagggctgtggcttgcactcgaagatgcgacaaaaacgaatggtt 28349908 Query: 264 gcctatgggcaattcccggatcacataaaa 293 |||| ||||||||||| ||||||||||||| Sbjct: 28349907 gcctttgggcaattcctggatcacataaaa 28349878 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Minus Query: 44 cctgtgttcaaaaagtttgctttctcggagaatatttctagcctgttctcttctttaggg 103 ||||||||||||||||| |||| | |||| |||| |||||||||||||||||| | Sbjct: 28350208 cctgtgttcaaaaagttctcttttggagcgaatgtttccagcctgttctcttctttacgc 28350149 Query: 104 tacaagagacctgcagttattcaatctatgtacatctttaag 145 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 28350148 tacaagagacctgcagttattcaatctatgtacatctttaag 28350107 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 449 ctttctccagtctcaagacatgcactgagcttgcatgtagttgacatggaaggatgtaaa 508 |||||||| || |||||||||||||||||||| |||||| |||| | ||||||||| || Sbjct: 28349547 ctttctccggtgtcaagacatgcactgagcttacatgtaattgataccgaaggatgtgaa 28349488 Query: 509 tggtccaaggataactgg 526 ||||||||| | |||||| Sbjct: 28349487 tggtccaagcaaaactgg 28349470 Score = 61.9 bits (31), Expect = 2e-06 Identities = 112/139 (80%) Strand = Plus / Minus Query: 300 tgaaaaggcgaatgatcagggatgaaaatggcactcattttgatcgtccctccccgcttt 359 ||||||||||||||||||| ||||||| | ||||||||||||| ||| || || | Sbjct: 28349778 tgaaaaggcgaatgatcagagatgaaatcgatactcattttgatcatccttcgccaacct 28349719 Query: 360 atgatcagaaagagtttgtaccactggaaatgaaatcaggtgactttgttgttattcatg 419 |||||| |||||| ||||| || | ||| | || |||||||| || || |||||||||| Sbjct: 28349718 atgatctgaaagaatttgtgcccttagaagtaaagtcaggtgatttggtggttattcatg 28349659 Query: 420 gtgatcttgtacatcagag 438 | |||||| |||| ||||| Sbjct: 28349658 gagatcttatacaccagag 28349640
>ref|NM_126210.2| Arabidopsis thaliana phytanoyl-CoA dioxygenase AT2G01490 mRNA, complete cds Length = 1136 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Plus Query: 257 aatggttgcctatgggcaattcccggatcacataaaaatggttt 300 |||||||| || ||||||||||| ||||| ||||| |||||||| Sbjct: 602 aatggttgtctttgggcaattcctggatctcataagaatggttt 645
>gb|AY116965.1| Arabidopsis thaliana At2g01490/F2I9.11 mRNA, complete cds Length = 852 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Plus Query: 257 aatggttgcctatgggcaattcccggatcacataaaaatggttt 300 |||||||| || ||||||||||| ||||| ||||| |||||||| Sbjct: 538 aatggttgtctttgggcaattcctggatctcataagaatggttt 581
>gb|AY057710.1| Arabidopsis thaliana At2g01490/F2I9.11 mRNA, complete cds Length = 1029 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Plus Query: 257 aatggttgcctatgggcaattcccggatcacataaaaatggttt 300 |||||||| || ||||||||||| ||||| ||||| |||||||| Sbjct: 558 aatggttgtctttgggcaattcctggatctcataagaatggttt 601
>gb|AY088080.1| Arabidopsis thaliana clone 41002 mRNA, complete sequence Length = 1131 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Plus Query: 257 aatggttgcctatgggcaattcccggatcacataaaaatggttt 300 |||||||| || ||||||||||| ||||| ||||| |||||||| Sbjct: 602 aatggttgtctttgggcaattcctggatctcataagaatggttt 645 Score = 44.1 bits (22), Expect = 0.50 Identities = 73/90 (81%) Strand = Plus / Plus Query: 98 ttagggtacaagagacctgcagttattcaatctatgtacatctttaagcaaccaggcatt 157 ||||| ||||||||||| | || || || |||||||| || || |||||||| || ||| Sbjct: 443 ttaggttacaagagaccagttgtcatgcagtctatgtatattttcaagcaacctggaatt 502 Query: 158 ggtggcgaggtggtgccacaccaggataat 187 || ||||| || ||||| ||||| |||||| Sbjct: 503 ggaggcgaagttgtgccgcaccaagataat 532
>gb|BC085396.1| Danio rerio zgc:101639, mRNA (cDNA clone MGC:101639 IMAGE:7225681), complete cds Length = 1368 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 130 tatgtacatctttaagcaaccaggcattggtgg 162 |||||||||||| |||||||| || |||||||| Sbjct: 687 tatgtacatcttcaagcaacccgggattggtgg 719
>emb|AL031650.22|HS1018D12 Human DNA sequence from clone RP5-1018D12 on chromosome 20q11.1-11.22 Contains part of a CDK5 regulatory subunit associated protein 3 (CDK5RAP3) pseudogene, the RPL31P3 gene for ribosomal protein L31 pseudogene 3, a novel pseudogene, the DEFB118 gene for defensin beta 118 and the 3' end of the the DEFB119 gene for defensin beta 119, complete sequence Length = 98490 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 318 gggatgaaaatggcactcatt 338 ||||||||||||||||||||| Sbjct: 1167 gggatgaaaatggcactcatt 1187
>ref|NM_001007445.1| Danio rerio zgc:101639 (zgc:101639), mRNA Length = 1368 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 130 tatgtacatctttaagcaaccaggcattggtgg 162 |||||||||||| |||||||| || |||||||| Sbjct: 687 tatgtacatcttcaagcaacccgggattggtgg 719
>ref|XM_682646.1| PREDICTED: Danio rerio similar to phytanoyl-CoA dioxygenase domain containing 1 (predicted) (LOC572931), mRNA Length = 1092 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 130 tatgtacatctttaagcaaccaggcattggtgg 162 |||||||||||| |||||||| || |||||||| Sbjct: 678 tatgtacatcttcaagcaacccgggattggtgg 710
>gb|AC073533.19| Homo sapiens X BAC RP11-589J20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182056 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 atcaggtgactttgttgttat 414 ||||||||||||||||||||| Sbjct: 16278 atcaggtgactttgttgttat 16258
>gb|AC004914.1| Homo sapiens PAC clone RP5-886O8 from 7, complete sequence Length = 143769 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 ttcaaaaagtttgctttctc 69 |||||||||||||||||||| Sbjct: 108374 ttcaaaaagtttgctttctc 108393
>gb|BC053853.1| Homo sapiens phytanoyl-CoA dioxygenase domain containing 1, mRNA (cDNA clone MGC:61786 IMAGE:5209351), complete cds Length = 1252 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 atgtacatctttaagcaacc 150 |||||||||||||||||||| Sbjct: 423 atgtacatctttaagcaacc 442
>emb|AL445430.15| Human DNA sequence from clone RP11-716O23 on chromosome 6 Contains one or two novel genes, a repressor of protein-kinase (interferon-inducible double stranded RNA dependent inhibitor) (P58 repressor) (PRKRIR) pseudogene and a CpG island, complete sequence Length = 127862 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 acctttctccagtctcaaga 466 |||||||||||||||||||| Sbjct: 104359 acctttctccagtctcaaga 104378
>emb|AL391839.9| Human DNA sequence from clone RP11-135A24 on chromosome 10 Contains the 5' end of the EPC1 gene for enhancer of polycomb homolog 1, (Drosophila), the 5' end of the gene for a novel protein (FLJ32762) (FLJ25419), two novel genes and a CpG island, complete sequence Length = 162591 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gaagatgcaacaacaaccaa 258 |||||||||||||||||||| Sbjct: 145750 gaagatgcaacaacaaccaa 145731
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 gcattggtggcgaggtggtg 172 |||||||||||||||||||| Sbjct: 1802584 gcattggtggcgaggtggtg 1802565
>emb|AL117376.28|HSDJ971B4 Human DNA sequence from clone RP5-971B4 on chromosome 20 Contains the 3' end of the C20orf23 gene for a novel protein similar to KIF1 type and other kinesin-like proteins, complete sequence Length = 162213 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 caccaggataatacatttct 195 |||||||||||||||||||| Sbjct: 143659 caccaggataatacatttct 143640
>emb|AL445066.1|TACID4 Thermoplasma acidophilum complete genome; segment 4/5 Length = 297750 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 tgatcagggatgaaaatggc 331 |||||||||||||||||||| Sbjct: 65938 tgatcagggatgaaaatggc 65957
>dbj|AK095000.1| Homo sapiens cDNA FLJ37681 fis, clone BRHIP2012972 Length = 2133 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 atgtacatctttaagcaacc 150 |||||||||||||||||||| Sbjct: 1354 atgtacatctttaagcaacc 1373
>emb|CR614962.1| full-length cDNA clone CS0DI024YM17 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 832 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 atgtacatctttaagcaacc 150 |||||||||||||||||||| Sbjct: 52 atgtacatctttaagcaacc 71
>gb|AC146630.25| Medicago truncatula clone mth2-7f22, complete sequence Length = 124189 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 ctttatgatcagaaagagtt 375 |||||||||||||||||||| Sbjct: 68241 ctttatgatcagaaagagtt 68260
>emb|CR598139.1| full-length cDNA clone CS0DE001YM23 of Placenta of Homo sapiens (human) Length = 1533 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 atgtacatctttaagcaacc 150 |||||||||||||||||||| Sbjct: 765 atgtacatctttaagcaacc 784
>dbj|AK054994.1| Homo sapiens cDNA FLJ30432 fis, clone BRACE2008999 Length = 1811 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 atgtacatctttaagcaacc 150 |||||||||||||||||||| Sbjct: 866 atgtacatctttaagcaacc 885
>gb|AC159625.2| Mus musculus BAC clone RP24-262L7 from chromosome 12, complete sequence Length = 189979 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 ccactgtatgtgtcttagtt 570 |||||||||||||||||||| Sbjct: 135549 ccactgtatgtgtcttagtt 135568
>gb|AC022257.19| Homo sapiens chromosome 8, clone RP11-715M14, complete sequence Length = 174545 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 tggtgatcttgtacatcaga 437 |||||||||||||||||||| Sbjct: 104479 tggtgatcttgtacatcaga 104498
>dbj|AK049437.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430011E04 product:small nuclear ribonucleoprotein B, full insert sequence Length = 3462 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ggagaatatttctagcctgt 89 |||||||||||||||||||| Sbjct: 1239 ggagaatatttctagcctgt 1258
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 cgctttatgatcagaaagag 373 |||||||||||||||||||| Sbjct: 24356828 cgctttatgatcagaaagag 24356809
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gatcacataaaaatggtttg 301 |||||||||||||||||||| Sbjct: 27367587 gatcacataaaaatggtttg 27367568
>dbj|D34625.2| Homo sapiens TBXAS1 gene for thromboxane synthase, complete cds Length = 16886 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 ttcaaaaagtttgctttctc 69 |||||||||||||||||||| Sbjct: 4517 ttcaaaaagtttgctttctc 4498
>gb|AC138123.2| Homo sapiens 12 BAC RP11-202G11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 107706 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 gaaagagtttgtaccactgg 386 |||||||||||||||||||| Sbjct: 68486 gaaagagtttgtaccactgg 68467
>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1323_A06 Length = 95665 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gatcacataaaaatggtttg 301 |||||||||||||||||||| Sbjct: 69114 gatcacataaaaatggtttg 69095
>gb|AC005774.1|AC005774 Homo sapiens chromosome 16, BAC clone 26O3 (LANL), complete sequence Length = 164538 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 235 gcttgaagatgcaacaacaaccaa 258 |||| ||||||||||||||||||| Sbjct: 91716 gcttcaagatgcaacaacaaccaa 91739
>emb|AL833804.16| Mouse DNA sequence from clone RP23-20A6 on chromosome 2, complete sequence Length = 200521 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ggagaatatttctagcctgt 89 |||||||||||||||||||| Sbjct: 84640 ggagaatatttctagcctgt 84621
>emb|BX537934.1|HSM806056 Homo sapiens mRNA; cDNA DKFZp686E0831 (from clone DKFZp686E0831) Length = 4865 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gaagatgcaacaacaaccaa 258 |||||||||||||||||||| Sbjct: 3039 gaagatgcaacaacaaccaa 3058
>gb|AC161242.2| Mus musculus BAC clone RP24-200E4 from chromosome 12, complete sequence Length = 179665 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 ccactgtatgtgtcttagtt 570 |||||||||||||||||||| Sbjct: 53498 ccactgtatgtgtcttagtt 53517
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 cgctttatgatcagaaagag 373 |||||||||||||||||||| Sbjct: 24285034 cgctttatgatcagaaagag 24285015
>emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058_H10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103803 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 cgctttatgatcagaaagag 373 |||||||||||||||||||| Sbjct: 20360 cgctttatgatcagaaagag 20341
>emb|AL772427.4|CNS08CA5 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135793 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 cgctttatgatcagaaagag 373 |||||||||||||||||||| Sbjct: 133602 cgctttatgatcagaaagag 133583
>emb|AJ420459.1|HSA420459 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1635059 Length = 2518 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 atgtacatctttaagcaacc 150 |||||||||||||||||||| Sbjct: 1716 atgtacatctttaagcaacc 1735 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,602,442 Number of Sequences: 3902068 Number of extensions: 5602442 Number of successful extensions: 101446 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101156 Number of HSP's gapped (non-prelim): 275 length of query: 572 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 549 effective length of database: 17,143,297,704 effective search space: 9411670439496 effective search space used: 9411670439496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
