ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8o02 |
|---|---|
| Clone Library Name | barley_pub |
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 93.2 bits (230), Expect = 5e-19 Identities = 47/83 (56%), Positives = 54/83 (65%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXX 210 DPNNTT+F+GGL VTED L+ F P+G +V+VKIPVGK CGFVQY +R SAE Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGM 368 Query: 211 XXXXXXXXNVRLSWGRSPSNKQT 279 VRLSWGRS KQT Sbjct: 369 QGFPIANSRVRLSWGRSA--KQT 389 Score = 37.4 bits (85), Expect = 0.032 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 7/54 (12%) Frame = +1 Query: 37 NNTTIFVGGLDPNVTEDALKQVFA-PYGEVVHVKI------PVGKRCGFVQYAN 177 NN +IFVG L PNVTE L ++F Y H KI + K GFV++ N Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTN 214
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 80.5 bits (197), Expect = 3e-15 Identities = 42/96 (43%), Positives = 56/96 (58%), Gaps = 7/96 (7%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXX 210 D N+T+FVGGL V+E+ LK +F +GE+V+VKIP GK CGFVQ+ NR SAE Sbjct: 299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQL 358 Query: 211 XXXXXXXXNVRLSWGRSPS-------NKQTQPQEAT 297 +RLSWGR+ + N Q+Q + T Sbjct: 359 QGYPLGNSRIRLSWGRNQNPIAAPALNYQSQVSQTT 394 Score = 33.9 bits (76), Expect = 0.35 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Frame = +1 Query: 4 NTQXAQSDNDPN---NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG----- 159 NT S D N TT+++G L+P VTE ++QV+ G+ V VK+ + G Sbjct: 77 NTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGY 136 Query: 160 -FVQYAN 177 FV++A+ Sbjct: 137 CFVEFAS 143
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 80.1 bits (196), Expect = 4e-15 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 1/86 (1%) Frame = +1 Query: 25 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXX 204 + DP NTT+FVGGL P TE L+ +F P+G +++V+IP GK CGFV++ R AE Sbjct: 354 NTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQ 413 Query: 205 XXXXXXXXXXNVRLSWGR-SPSNKQT 279 +RLSWGR S SN +T Sbjct: 414 GLQGFIVGGSPIRLSWGRPSSSNAKT 439
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 77.4 bits (189), Expect = 3e-14 Identities = 33/77 (42%), Positives = 49/77 (63%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXX 210 DP NTT+FVGGL N++E L+ F P+G ++++KIP GK CGFVQY+ + +AE Sbjct: 293 DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTM 352 Query: 211 XXXXXXXXNVRLSWGRS 261 ++RL+WG + Sbjct: 353 QGALVGTSHIRLAWGHN 369
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 53.9 bits (128), Expect = 3e-07 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 9/103 (8%) Frame = +1 Query: 22 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXX 201 S + PNN T++ GG+ +TE ++Q F+P+G+++ +++ K FV++++ SA Sbjct: 207 SQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAI 266 Query: 202 XXXXXXXXXXXNVRLSWGR------SPSNKQTQ---PQEATQW 303 V+ WG+ +P +Q Q P QW Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPPTYGQW 309 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPSAEXXXXXX 210 +FVG L P +T + +K FAP+G + ++ K GFV + N+ AE Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 211 XXXXXXXXNVRLSWG--RSPSNKQTQPQEATQ 300 +R +W + P+ K T Q Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ 199 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG----FVQYANRPSAEXXXXXXX 213 T++VG L +VTE + Q+F+ G + K+ + FV++ A Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67 Query: 214 XXXXXXXNVRLSWGRSPSNKQTQPQEAT 297 V+++W +PS+++ +T Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSST 95
>YBKC_SCHPO (O94621) Hypothetical RNA-binding protein C1289.12 in chromosome II| Length = 352 Score = 52.4 bits (124), Expect = 1e-06 Identities = 27/91 (29%), Positives = 43/91 (47%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXX 210 DPNNT ++V L N+T L+ F +GE+++ + V G + +A R AE Sbjct: 172 DPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQ--VNNNSGRIVFAQRYFAEQAINEM 229 Query: 211 XXXXXXXXNVRLSWGRSPSNKQTQPQEATQW 303 ++LSW R PS +++T W Sbjct: 230 NNFPLHGVRIQLSWARPPSMALLPSKQSTYW 260
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 9/103 (8%) Frame = +1 Query: 22 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXX 201 + + P+N T++ GG+ +TE ++Q F+P+G+++ +++ K FV++ + SA Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 266 Query: 202 XXXXXXXXXXXNVRLSWGR------SPSNKQTQ---PQEATQW 303 V+ WG+ +P +Q Q PQ QW Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQW 309 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 8/108 (7%) Frame = +1 Query: 1 TNTQXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGF 162 +++ + N+ +FVG L P +T + +K FAP+G + ++ K GF Sbjct: 92 SSSTVVSTQRSQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 151 Query: 163 VQYANRPSAEXXXXXXXXXXXXXXNVRLSWG--RSPSNKQTQPQEATQ 300 V + N+ AE +R +W + P+ K T Q Sbjct: 152 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ 199 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG----FVQYANRPSAEXXXXXXX 213 T++VG L +VTE + Q+F+ G + K+ + FV++ A Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67 Query: 214 XXXXXXXNVRLSWGRSPSNKQTQPQEAT 297 V+++W +PS+++ +T Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSST 95
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 50.8 bits (120), Expect = 3e-06 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Frame = +1 Query: 22 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXX 201 + + P N T++ GG+ +T+ ++Q F+P+G+++ +++ K FV+++ SA Sbjct: 198 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 257 Query: 202 XXXXXXXXXXXNVRLSWGR-SPS-NKQTQPQEATQW 303 V+ WG+ SP K Q + +QW Sbjct: 258 VSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 293 Score = 48.5 bits (114), Expect = 1e-05 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 8/106 (7%) Frame = +1 Query: 7 TQXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQ 168 T +Q + N+ +FVG L P +T + +K FAP+G++ ++ K GFV Sbjct: 85 TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 144 Query: 169 YANRPSAEXXXXXXXXXXXXXXNVRLSWG--RSPSNKQTQPQEATQ 300 + N+ AE +R +W + P+ K TQ Q Sbjct: 145 FYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQ 190 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 4/88 (4%) Frame = +1 Query: 25 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG----FVQYANRPSAE 192 ++D T++VG L +VTE + Q+F+ G K+ FV++ A Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62 Query: 193 XXXXXXXXXXXXXXNVRLSWGRSPSNKQ 276 V+++W +PS+++ Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQK 90
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 50.8 bits (120), Expect = 3e-06 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Frame = +1 Query: 22 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXX 201 + + P N T++ GG+ +T+ ++Q F+P+G+++ +++ K FV+++ SA Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274 Query: 202 XXXXXXXXXXXNVRLSWGR-SPS-NKQTQPQEATQW 303 V+ WG+ SP K Q + +QW Sbjct: 275 VSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 310 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 8/106 (7%) Frame = +1 Query: 7 TQXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQ 168 T +Q + N+ +FVG L P +T + +K FAP+G++ ++ K GFV Sbjct: 102 TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 161 Query: 169 YANRPSAEXXXXXXXXXXXXXXNVRLSWG--RSPSNKQTQPQEATQ 300 + N+ AE +R +W + P+ K TQ Q Sbjct: 162 FYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQ 207
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/48 (45%), Positives = 30/48 (62%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 +FVG L ++TED K++FA YGE V I GK GF++ +R AE Sbjct: 299 LFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAE 346
>NELFE_DROME (P92204) Negative elongation factor E| Length = 280 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/59 (42%), Positives = 33/59 (55%) Frame = +1 Query: 16 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 AQ + TIFV G VTED LK+ F YG +V+V + + K GFV +A SA+ Sbjct: 157 AQPEKPRAGNTIFVSG--NKVTEDFLKKTFNDYGTIVNVSMEIEKSRGFVSFAKPESAD 213
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/48 (45%), Positives = 30/48 (62%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 +FVG L ++TED K++FA YGE V I GK GF++ +R AE Sbjct: 291 LFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAE 338
>SLT11_EMENI (Q5AX35) Pre-mRNA-splicing factor slt11| Length = 385 Score = 43.9 bits (102), Expect = 3e-04 Identities = 20/54 (37%), Positives = 32/54 (59%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 DPN T++FV G++ ++ E AL+ F +G++ + C F+ YA R SAE Sbjct: 233 DPNITSLFVTGVEDDLPEHALRSFFVQFGQLRSLVCSHRAHCAFINYAARESAE 286
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 42.0 bits (97), Expect = 0.001 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV------GKRCGFVQYANRPSAEXXXXX 207 T+F+G L N DA+ ++FA +GEVV V+IP K G+VQ++N A+ Sbjct: 268 TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDA 327 Query: 208 XXXXXXXXXNVRLSWGRSPSN 270 VRL + N Sbjct: 328 LQGEYIDNRPVRLDFSSPRPN 348
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 4/43 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGFV 165 IFVGGL+P TE+ +++ F +GE+ +++P+ KR GFV Sbjct: 161 IFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFV 203 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Frame = +1 Query: 10 QXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV------GKRCGFVQY 171 Q S N+ + +FVGGL + ++ LK F +GEVV I + + GF+ + Sbjct: 64 QINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 123 Query: 172 ANRPSAE 192 + S E Sbjct: 124 KDSSSVE 130
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 40.8 bits (94), Expect = 0.003 Identities = 18/48 (37%), Positives = 30/48 (62%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 +++G L +VTE+ LK++F+PYGE+ I K F++ R +AE Sbjct: 115 LYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAE 162 Score = 29.3 bits (64), Expect = 8.7 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC-----GFVQYANRPSA 189 PN TTI V L P V+ + L + F +G+V I V R G V++A + A Sbjct: 184 PNATTIRVKNLTPFVSNELLFKSFEVFGQVERAVIIVDDRGKTTGEGIVEFARKSGA 240
>NELFE_DROVI (Q95ZE9) Negative elongation factor E| Length = 281 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/58 (39%), Positives = 32/58 (55%) Frame = +1 Query: 19 QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 Q + TIFV G VTE+ LK+ F YG +V+V + + K GFV +A SA+ Sbjct: 159 QPEKPRAGNTIFVSG--NKVTEEFLKKTFNDYGTIVNVSMEIEKSRGFVSFAKPESAD 214
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 40.0 bits (92), Expect = 0.005 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-----GKRCGFVQYANRPSAE 192 IF+ LD ++ AL F+ +G +V K+ V K GFVQYAN SA+ Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQ 178 Score = 38.1 bits (87), Expect = 0.019 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 5/55 (9%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVG--KRCGFVQYANRPSA 189 ++ ++V LDP+++++ LK++F+P+G V K+ P G K GFV +A A Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEA 371 Score = 32.7 bits (73), Expect = 0.79 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 NT+++VG LD NVT+ L F G VV V++ Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRV 67 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Frame = +1 Query: 28 NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYANRPSA 189 N T ++V L + T+D LK F YG++ + K GFV + N A Sbjct: 210 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDA 268
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 39.7 bits (91), Expect = 0.006 Identities = 23/86 (26%), Positives = 35/86 (40%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXX 213 P TT ++G + TE L +F +G ++ K K C F++Y A Sbjct: 337 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALA 396 Query: 214 XXXXXXXNVRLSWGRSPSNKQTQPQE 291 N+R WG+ SN Q Q+ Sbjct: 397 NFPFQGRNLRTGWGKERSNFMPQQQQ 422 Score = 38.5 bits (88), Expect = 0.014 Identities = 18/48 (37%), Positives = 28/48 (58%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYA 174 + ++ ++VG LD +TED LKQ F G + ++KI + K V YA Sbjct: 70 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYA 117
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 39.3 bits (90), Expect = 0.008 Identities = 18/48 (37%), Positives = 29/48 (60%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 +FVG L P++TE+ ++++F YG+ V I K GF++ R AE Sbjct: 81 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAE 128
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 39.3 bits (90), Expect = 0.008 Identities = 18/48 (37%), Positives = 29/48 (60%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 +FVG L P++TE+ ++++F YG+ V I K GF++ R AE Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAE 123
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 39.3 bits (90), Expect = 0.008 Identities = 18/48 (37%), Positives = 29/48 (60%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 +FVG L P++TE+ ++++F YG+ V I K GF++ R AE Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAE 123
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 39.3 bits (90), Expect = 0.008 Identities = 18/48 (37%), Positives = 29/48 (60%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 +FVG L P++TE+ ++++F YG+ V I K GF++ R AE Sbjct: 78 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAE 125
>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)| Length = 700 Score = 38.9 bits (89), Expect = 0.011 Identities = 16/48 (33%), Positives = 30/48 (62%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 ++VG L ++T+D L+++F PYGE+ + + K F++ P+AE Sbjct: 304 LYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDYHPNAE 351
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 38.5 bits (88), Expect = 0.014 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 177 T+FVGG+D + E ++ FA YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYN 89
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 38.5 bits (88), Expect = 0.014 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 177 T+FVGG+D + E ++ FA YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFN 89
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 38.5 bits (88), Expect = 0.014 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 177 T+FVGG+D + E ++ FA YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFN 89
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 38.1 bits (87), Expect = 0.019 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 5/48 (10%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYA 174 T+FVGG+D V E+ +++ FA YG V VKI + K GFV ++ Sbjct: 48 TLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFS 95
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 37.7 bits (86), Expect = 0.024 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 177 T+FVGG+D + E ++ FA YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDRTGVSKGYGFVSFFN 89
>SEB1_SCHPO (Q9UTE3) Rpb7-binding protein seb1| Length = 620 Score = 37.7 bits (86), Expect = 0.024 Identities = 19/70 (27%), Positives = 32/70 (45%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXX 225 T+F+GG+ +V E L+ +F +G V + + R GF++ R +AE Sbjct: 407 TLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKAQVAMENVPF 466 Query: 226 XXXNVRLSWG 255 +R WG Sbjct: 467 ADTTIRTKWG 476
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 37.7 bits (86), Expect = 0.024 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 6/48 (12%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHV---KIPVGKRC---GFVQYA 174 +F+GGLD T+++LKQ F +GE+V V K P KR GF+ Y+ Sbjct: 19 LFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYS 66 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 150 +FVGG+ + E+ L+ F YG VV I V K Sbjct: 110 LFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDK 143
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 37.4 bits (85), Expect = 0.032 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 4/42 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGF 162 IFVGGL P+ E+ +++ F +GEV +++P+ KR GF Sbjct: 182 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 223
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 37.4 bits (85), Expect = 0.032 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 4/42 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGF 162 IFVGGL P+ E+ +++ F +GEV +++P+ KR GF Sbjct: 36 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 77
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 37.4 bits (85), Expect = 0.032 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 4/42 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGF 162 IFVGGL P+ E+ +++ F +GEV +++P+ KR GF Sbjct: 184 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 225
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 37.4 bits (85), Expect = 0.032 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 4/42 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGF 162 IFVGGL P+ E+ +++ F +GEV +++P+ KR GF Sbjct: 184 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 225
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 37.4 bits (85), Expect = 0.032 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%) Frame = +1 Query: 19 QSDNDP-NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC-GFVQYANRPSAE 192 QS ++P + +FVG ++TED L++ F+ YG+V+ V IP R FV +A+ A+ Sbjct: 182 QSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQ 241
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 37.4 bits (85), Expect = 0.032 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 4/42 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGF 162 IFVGGL P+ E+ +++ F +GEV +++P+ KR GF Sbjct: 174 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 215
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 37.0 bits (84), Expect = 0.042 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +1 Query: 1 TNTQXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 T + +++D + +F+GGL+ + TED L++ F YG V +KI Sbjct: 145 TKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKI 190 Score = 30.0 bits (66), Expect = 5.1 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = +1 Query: 25 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 159 D IFVGG+ P+V ++ F+ +G ++ ++ + K G Sbjct: 237 DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTG 281
>SLT11_ASPFU (Q4W9V0) Pre-mRNA-splicing factor slt11| Length = 383 Score = 37.0 bits (84), Expect = 0.042 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 DPN ++FV G++ ++ E L+ F +G++ + C F+ +A R AE Sbjct: 238 DPNIMSLFVTGVEDDLPEHTLRTFFTQFGQLRSLICSHRAHCAFINFATREGAE 291
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 37.0 bits (84), Expect = 0.042 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 7/60 (11%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 192 P T + +G L NVT+D + ++F+ YG++ + +PV K +V++ N AE Sbjct: 158 PKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 37.0 bits (84), Expect = 0.042 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 7/60 (11%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 192 P T + +G L NVT+D + ++F+ YG++ + +PV K +V++ N AE Sbjct: 158 PKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 37.0 bits (84), Expect = 0.042 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 7/60 (11%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 192 P T + +G L NVT+D + ++F+ YG++ + +PV K +V++ N AE Sbjct: 158 PKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 37.0 bits (84), Expect = 0.042 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 7/60 (11%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 192 P T + +G L NVT+D + ++F+ YG++ + +PV K +V++ N AE Sbjct: 158 PKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 37.0 bits (84), Expect = 0.042 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 7/60 (11%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 192 P T + +G L NVT+D + ++F+ YG++ + +PV K +V++ N AE Sbjct: 158 PKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 37.0 bits (84), Expect = 0.042 Identities = 19/43 (44%), Positives = 26/43 (60%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYA 174 T+FVG L+ VTE+ L ++F G V+ VKIP K Q+A Sbjct: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFA 53
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 36.6 bits (83), Expect = 0.055 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYANRPSAE 192 IFVGG+D E L++ F+ YG V VKI V K GFV + + A+ Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 87
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 36.6 bits (83), Expect = 0.055 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYANRPSAE 192 IFVGG+D E L++ F+ YG V VKI V K GFV + + A+ Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 87
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 36.6 bits (83), Expect = 0.055 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 177 T+FVGG+D + E + F YG V VKI V K GFV + N Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVN 419 Score = 36.6 bits (83), Expect = 0.055 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 177 T+FVGG+D + E + F YG V VKI V K GFV + N Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVN 254 Score = 36.6 bits (83), Expect = 0.055 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 177 T+FVGG+D + E + F YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVN 89
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 36.6 bits (83), Expect = 0.055 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 177 T+FVGG+D + E + F YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVN 89
>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy| suppressor of sporulation protein msa2) Length = 529 Score = 36.6 bits (83), Expect = 0.055 Identities = 20/70 (28%), Positives = 34/70 (48%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXX 228 I++G D ++T + LK+ F +GE+ +V K C FV + + SA Sbjct: 416 IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASA-INAIDRIKQKKG 474 Query: 229 XXNVRLSWGR 258 N R+S+G+ Sbjct: 475 YENYRISYGK 484 Score = 35.4 bits (80), Expect = 0.12 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 189 +F+G L +TED +++ P+G + +KI + FV + N +A Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAA 254
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 36.6 bits (83), Expect = 0.055 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 177 T+FVGG+D + E + F YG V VKI V K GFV + N Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVN 254 Score = 36.6 bits (83), Expect = 0.055 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 177 T+FVGG+D + E + F YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVN 89
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 36.6 bits (83), Expect = 0.055 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 177 T+FVGG+D + E + F YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVN 89
>CWC2_YEAST (Q12046) Pre-mRNA-splicing factor CWC2 (Complexed with CEF1 protein| 2) (PRP19-associated complex protein 40) (Synthetic lethal with CLF1 protein 3) Length = 339 Score = 36.6 bits (83), Expect = 0.055 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 9/60 (15%) Frame = +1 Query: 40 NTTIFVGGLD---------PNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 N T++VGG+D P E ++ VF+ G++ ++ K CGFV++ + +AE Sbjct: 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAE 193
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 36.6 bits (83), Expect = 0.055 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYANRPSAE 192 IFVGG+D E+ L++ F+ YG V VKI V K GF+ + + A+ Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQ 87
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 36.2 bits (82), Expect = 0.071 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 6/58 (10%) Frame = +1 Query: 37 NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSAE 192 N IFVGGL N T+D +++ ++ +GE+ + + P KR GFV ++ + + Sbjct: 21 NLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVD 78 Score = 29.3 bits (64), Expect = 8.7 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 6/64 (9%) Frame = +1 Query: 19 QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANR 180 +S+++ + ++V G+ + TED L + F YG V +I + K GFV + + Sbjct: 106 RSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDH 165 Query: 181 PSAE 192 S + Sbjct: 166 DSVD 169
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 36.2 bits (82), Expect = 0.071 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI----PVGKRCGF 162 +FVGGL N E+ L++ F +G VV VK+ GKR GF Sbjct: 125 LFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGF 166 Score = 31.2 bits (69), Expect = 2.3 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 +F+GGL P TE+ LK + +G+VV V + Sbjct: 34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVV 63
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 35.8 bits (81), Expect = 0.093 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAEXXXXXX 210 +FVGGL + E AL+QVF+ YG++ V + + GFV + N A+ Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 211 XXXXXXXXNVRLSW-GRSPSNK 273 +R+ G+S N+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 35.8 bits (81), Expect = 0.093 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAEXXXXXX 210 +FVGGL + E AL+QVF+ YG++ V + + GFV + N A+ Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 211 XXXXXXXXNVRLSW-GRSPSNK 273 +R+ G+S N+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 35.8 bits (81), Expect = 0.093 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAEXXXXXX 210 +FVGGL + E AL+QVF+ YG++ V + + GFV + N A+ Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 211 XXXXXXXXNVRLSW-GRSPSNK 273 +R+ G+S N+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 35.8 bits (81), Expect = 0.093 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = +1 Query: 85 DALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSP 264 D L+ +F +G ++ V + GK G+V+YA+R SA +++ SP Sbjct: 406 DVLEDIFCRFGNLIEVYLVSGKNVGYVKYADRKSANEAITTLHGKILNGVRLKVMLADSP 465 Query: 265 SNKQTQPQ 288 + + Q Sbjct: 466 REESKKRQ 473
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 35.8 bits (81), Expect = 0.093 Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 5/44 (11%) Frame = +1 Query: 49 IFVGGLDP-NVTEDALKQVFAPYGEVVHVKIP----VGKRCGFV 165 IFVGGL+P + TE+ +++ F +GE+ +++P + KR GFV Sbjct: 154 IFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFV 197 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Frame = +1 Query: 10 QXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV------GKRCGFVQY 171 Q S N+ + +FVGGL + ++ LK F +GEVV I + + GF+ + Sbjct: 57 QINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 116 Query: 172 ANRPSAE 192 + S E Sbjct: 117 KDAASVE 123
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 35.8 bits (81), Expect = 0.093 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 150 T+FVG L+ VTE+ L ++F G V+ VKIP K Sbjct: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK 45
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 35.8 bits (81), Expect = 0.093 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 6/61 (9%) Frame = +1 Query: 10 QXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQY 171 Q A ++ +FV G+ + ED L+Q+F+ +G V HV+I PV K GF+ + Sbjct: 90 QSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149 Query: 172 A 174 + Sbjct: 150 S 150
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 35.8 bits (81), Expect = 0.093 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 150 T+FVG L+ VTE+ L ++F G V+ VKIP K Sbjct: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK 45
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 35.8 bits (81), Expect = 0.093 Identities = 14/32 (43%), Positives = 21/32 (65%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIP 141 TI+VGGL VTE L F P+G++ +++P Sbjct: 7 TIYVGGLADEVTERLLNNAFIPFGDIADIQMP 38
>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3| Length = 802 Score = 35.8 bits (81), Expect = 0.093 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = +1 Query: 28 NDPNNTTIFVGGLD-PNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPS 186 N P + +F+G L NV+++ L ++F+PYG ++ + I GF+Q+ N S Sbjct: 325 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQS 376
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 35.8 bits (81), Expect = 0.093 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Frame = +1 Query: 19 QSDNDP-NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC-GFVQYANRPSAE 192 QS ++P + +FVG ++T + L+Q F YGEVV V IP R FV +A+ A+ Sbjct: 182 QSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ 241
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 35.0 bits (79), Expect = 0.16 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 IFVG L PN T + ++ +F+ YG++ I K GFV ++ A+ Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIV--KNFGFVHMDSKSEAD 49
>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III| Length = 654 Score = 35.0 bits (79), Expect = 0.16 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = +1 Query: 28 NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYAN 177 N + +F+G L + E +++ F +G++ H+KI K FV + N Sbjct: 294 NTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLN 343 Score = 29.3 bits (64), Expect = 8.7 Identities = 12/47 (25%), Positives = 24/47 (51%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 189 ++ + ++T + L+ + YGE+ +K + GFV Y N +A Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNA 548
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 35.0 bits (79), Expect = 0.16 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Frame = +1 Query: 22 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRP 183 S D T IFVGGL + T+ +L++ F +G++ + ++ GFV A+R Sbjct: 4 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 63 Query: 184 SAE 192 +AE Sbjct: 64 AAE 66
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 35.0 bits (79), Expect = 0.16 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 NT +FV GL P T D L+ F+ ++ + +R GFV + + +A+ Sbjct: 3 NTRVFVSGLPPTFTNDQLRMHFSSRFQITDAHVLPKRRIGFVGFKSSEAAQ 53 Score = 33.5 bits (75), Expect = 0.46 Identities = 16/59 (27%), Positives = 27/59 (45%) Frame = +1 Query: 16 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 A + NT I V V D L+++F PYG++ + +P V++A A+ Sbjct: 475 AFKQRERGNTAILVKNFSYGVKVDDLRKLFEPYGQITRLLMPPSGTIAIVEFARPDEAQ 533
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 35.0 bits (79), Expect = 0.16 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAE 192 D T + V L N+T+D L+ +F+ GEV K+ K GFV Y AE Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75 Query: 193 XXXXXXXXXXXXXXNVRLSWGRSPS 267 +++S+ R S Sbjct: 76 RAINTLNGLRLQSKTIKVSYARPSS 100
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 35.0 bits (79), Expect = 0.16 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Frame = +1 Query: 10 QXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKR-----CGFVQYA 174 + + D+ N T+F+G LD VTE L++ F +G + V I R GF+++ Sbjct: 363 EISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFE 422 Query: 175 NRPSAEXXXXXXXXXXXXXXNVRLSWGRS 261 N + +++ +G++ Sbjct: 423 NLDMSHRAKLAMSGKIIIRNPIKIGYGKA 451
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 35.0 bits (79), Expect = 0.16 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 10/74 (13%) Frame = +1 Query: 1 TNTQXAQSDNDP----NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK---RC- 156 +N + S N + T +++ GL PN T+ L ++ PYG++V K + K +C Sbjct: 44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCK 103 Query: 157 --GFVQYANRPSAE 192 GFV + + +A+ Sbjct: 104 GYGFVDFDSPAAAQ 117
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 34.7 bits (78), Expect = 0.21 Identities = 13/39 (33%), Positives = 25/39 (64%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 150 P T + +G L NVT+D + ++F+ YG++ + +PV + Sbjct: 135 PRPTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDR 173
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 34.7 bits (78), Expect = 0.21 Identities = 14/35 (40%), Positives = 23/35 (65%) Frame = +1 Query: 85 DALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 189 D L+ +F +G ++ V + GK G+V+YA+R SA Sbjct: 406 DVLEDIFCRFGNLIEVYLVSGKNVGYVKYADRMSA 440
>COVA1_MOUSE (Q8R0Z2) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 598 Score = 34.7 bits (78), Expect = 0.21 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +1 Query: 16 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVK 135 A + P T+FVGGL N TE + +VF GE++ ++ Sbjct: 90 ATRERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEIIAIR 129
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 34.7 bits (78), Expect = 0.21 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 6/54 (11%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYG---EVVHVKIPVGKRC---GFVQYANRPSAE 192 +F+GGL+ ED L+Q F YG EVV VK KR GFV + N A+ Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAK 60
>COVA1_HUMAN (Q16206) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 610 Score = 34.7 bits (78), Expect = 0.21 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +1 Query: 16 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVK 135 A + P T+FVGGL N TE + +VF GE++ ++ Sbjct: 119 ATRERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEIIAIR 158
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 34.7 bits (78), Expect = 0.21 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYANRPSAE 192 IFVGG+ + TE L +VF+ YG V KI V K GFV + A+ Sbjct: 35 IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETEQEAQ 87
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 34.7 bits (78), Expect = 0.21 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKR 153 IFVGGL ++++ +K F +G +V V++P K+ Sbjct: 138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQ 172 Score = 34.3 bits (77), Expect = 0.27 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +1 Query: 1 TNTQXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 159 ++ Q A S ++ +FVGGL TE L+ F YGE+ + + + G Sbjct: 42 SDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTG 94
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 34.7 bits (78), Expect = 0.21 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQY 171 +FVGGLD + T++ L+ F+ YGEVV I K GFV++ Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58 Score = 30.4 bits (67), Expect = 3.9 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +1 Query: 19 QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHV 132 +SDN +N IFVGG+ N E L++ F +G V V Sbjct: 106 RSDNSKSNK-IFVGGIPHNCGETELREYFKKFGVVTEV 142
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 34.7 bits (78), Expect = 0.21 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 7/82 (8%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAEXXXXXX 210 +FVGGL + E +L+QVF+ YG++ V + + GFV + N A+ Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 211 XXXXXXXXNVRLSW-GRSPSNK 273 +R+ G+S N+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 34.7 bits (78), Expect = 0.21 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 7/82 (8%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAEXXXXXX 210 +FVGGL + E +L+QVF+ YG++ V + + GFV + N A+ Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 211 XXXXXXXXNVRLSW-GRSPSNK 273 +R+ G+S N+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 34.7 bits (78), Expect = 0.21 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 6/48 (12%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHV---KIPVGKRC---GFVQYA 174 +F+GGLD T+D LK F +G +V V K P KR GF+ Y+ Sbjct: 26 LFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYS 73 Score = 32.0 bits (71), Expect = 1.3 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI----PVGKRCGF 162 +FVGGL + E+ L++ F +G++V V I GK+ GF Sbjct: 117 LFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGF 158
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 34.7 bits (78), Expect = 0.21 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQY 171 +FVGGLD + T++ L+ F+ YGEVV I K GFV++ Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 34.7 bits (78), Expect = 0.21 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQY 171 +FVGGLD + T++ L+ F+ YGEVV I K GFV++ Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 34.7 bits (78), Expect = 0.21 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQY 171 T+FVGG+D + E ++ F YG V VKI V K GFV + Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSF 83
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 34.3 bits (77), Expect = 0.27 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 +T +FV GL P +T D LK+ F V + +R GFV + + +A+ Sbjct: 3 STRVFVSGLPPTLTNDQLKKHFETRFHVTDAHVLPKRRIGFVGFKSSEAAQ 53 Score = 29.3 bits (64), Expect = 8.7 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEV--VHV----KIPVGKRCGFVQYANRPSA 189 +FV L E L+ VF+P+G++ +HV + K +VQYA+ +A Sbjct: 297 LFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAA 349
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 34.3 bits (77), Expect = 0.27 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 159 IFVGGL +TE + VF+ YGE+V++ + K+ G Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTG 74
>NONA_DROLR (Q9GRX4) Protein no-on-transient A| Length = 698 Score = 34.3 bits (77), Expect = 0.27 Identities = 16/61 (26%), Positives = 32/61 (52%) Frame = +1 Query: 10 QXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 189 + AQ ++VG L ++T++ L+++F PYGE+ + + K F++ +A Sbjct: 270 EVAQETKFSGRNRLYVGNLTNDITDEELREMFKPYGEIGEIFSNLEKNFTFLKVDYHINA 329 Query: 190 E 192 E Sbjct: 330 E 330
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 34.3 bits (77), Expect = 0.27 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 6/95 (6%) Frame = +1 Query: 16 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG------FVQYAN 177 A S N P+ +FVG L +VT+D L++ F G++V +++ + G F+ + N Sbjct: 231 AMSKNPPSRI-LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKN 289 Query: 178 RPSAEXXXXXXXXXXXXXXNVRLSWGRSPSNKQTQ 282 + +R+ +G S +Q + Sbjct: 290 EEGSTNELKDKSCRKIAGRPLRMEYGEDRSKRQVR 324
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 34.3 bits (77), Expect = 0.27 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRCGF 162 DPN+ +FVG L +V +++L Q F+ Y +V K+ GK GF Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGF 72
>NONA_DROVI (Q9GRW7) Protein no-on-transient A| Length = 697 Score = 34.3 bits (77), Expect = 0.27 Identities = 16/61 (26%), Positives = 32/61 (52%) Frame = +1 Query: 10 QXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 189 + AQ ++VG L ++T++ L+++F PYGE+ + + K F++ +A Sbjct: 274 EVAQETKFSGRNRLYVGNLTNDITDEELREMFKPYGEIGEIFSNLEKNFTFLKVDYHINA 333 Query: 190 E 192 E Sbjct: 334 E 334
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 34.3 bits (77), Expect = 0.27 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 6/58 (10%) Frame = +1 Query: 37 NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------RCGFVQYANRPSAE 192 + T++VG +DP +T++ L ++F V+ +K P K F+++ N+ A+ Sbjct: 7 SGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQ 64
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 33.9 bits (76), Expect = 0.35 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = +1 Query: 37 NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKR-----CGFVQYANRPSAE 192 N T +++ LD +TE +F +GE+ + + + GFV YAN A+ Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQ 315 Score = 33.9 bits (76), Expect = 0.35 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%) Frame = +1 Query: 22 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRP 183 S P + +++VG LDP+VTE L ++F G V +++ V +R +V + N Sbjct: 73 SGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNME 132 Query: 184 SAEXXXXXXXXXXXXXXNVRLSWG-RSPS 267 E R+ W R PS Sbjct: 133 DGEKALDELNYTLIKGRPCRIMWSQRDPS 161 Score = 31.2 bits (69), Expect = 2.3 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-----GKRCGFVQYANRPSA 189 +F+ LDP + AL F+ +G+++ K+ V K GFV + + SA Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESA 221
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 33.9 bits (76), Expect = 0.35 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 6/54 (11%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV------GKRCGFVQYANRPSAE 192 ++VG L N+TED L+ +F P+G + +++ + K GF+ +++ A+ Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 33.9 bits (76), Expect = 0.35 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 6/54 (11%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV------GKRCGFVQYANRPSAE 192 ++VG L N+TED L+ +F P+G + +++ + K GF+ +++ A+ Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 33.9 bits (76), Expect = 0.35 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 8/89 (8%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPSAEXXX 201 + ++V GL +T+ L+Q+F+ YG ++ +I V + GF+++ R AE Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190 Query: 202 XXXXXX--XXXXXNVRLSWGRSPSNKQTQ 282 + + + +PS K +Q Sbjct: 191 KGLNGQKPSGATEPITVKFANNPSQKSSQ 219 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------RCGFVQYANRPSAE 192 D + T + V L N+T++ + +F GE+ K+ K GFV Y + AE Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101 Query: 193 XXXXXXXXXXXXXXNVRLSWGRSPS 267 +++S+ R S Sbjct: 102 KAINTLNGLRLQTKTIKVSYARPSS 126 Score = 30.4 bits (67), Expect = 3.9 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 IFV L P+ E L Q+F P+G V +VK+ Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKV 328
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 33.9 bits (76), Expect = 0.35 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG------KRCGFVQYANRPSAE 192 T+FVG L N TED L F G++ +++P K G+V +++ SA+ Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421 Score = 31.2 bits (69), Expect = 2.3 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 8/95 (8%) Frame = +1 Query: 31 DPNNT-TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV------GKRCGFVQYANRPSA 189 D N T T+FVG L NV + L Q F YG +V ++ + K G+V + +A Sbjct: 258 DSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAA 317 Query: 190 EXXXXXXXXXXXXXXNVRLSWGR-SPSNKQTQPQE 291 + V L P+N Q Q+ Sbjct: 318 KAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQ 352
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 33.9 bits (76), Expect = 0.35 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 8/89 (8%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPSAEXXX 201 + ++V GL +T+ L+Q+F+ YG ++ +I V + GF+++ R AE Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 202 XXXXXX--XXXXXNVRLSWGRSPSNKQTQ 282 + + + +PS K +Q Sbjct: 184 KGLNGQKPSGATEPITVKFANNPSQKSSQ 212 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------RCGFVQYANRPSAE 192 D + T + V L N+T++ + +F GE+ K+ K GFV Y + AE Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 193 XXXXXXXXXXXXXXNVRLSWGRSPS 267 +++S+ R S Sbjct: 95 KAINTLNGLRLQTKTIKVSYARPSS 119 Score = 30.4 bits (67), Expect = 3.9 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 IFV L P+ E L Q+F P+G V +VK+ Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKV 321
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 33.9 bits (76), Expect = 0.35 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSA 189 IF+ L P E AL Q+F P+G V VKI P +C GFV N A Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEA 492 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI-------PVGKRCGFVQYANRPSA 189 ++V GL +T+ L+ +FAP+G ++ +I K GF+++ R A Sbjct: 286 LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEA 339
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 33.9 bits (76), Expect = 0.35 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 8/89 (8%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPSAEXXX 201 + ++V GL +T+ L+Q+F+ YG ++ +I V + GF+++ R AE Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195 Query: 202 XXXXXX--XXXXXNVRLSWGRSPSNKQTQ 282 + + + +PS K +Q Sbjct: 196 KGLNGQKPSGATEPITVKFANNPSQKSSQ 224 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------RCGFVQYANRPSAE 192 D + T + V L N+T++ + +F GE+ K+ K GFV Y + AE Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106 Query: 193 XXXXXXXXXXXXXXNVRLSWGRSPS 267 +++S+ R S Sbjct: 107 KAINTLNGLRLQTKTIKVSYARPSS 131 Score = 30.4 bits (67), Expect = 3.9 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 IFV L P+ E L Q+F P+G V +VK+ Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKV 333
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 33.9 bits (76), Expect = 0.35 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAE 192 D T + V L N+T++ L+ +F+ GEV K+ K GFV Y AE Sbjct: 16 DIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75 Query: 193 XXXXXXXXXXXXXXNVRLSWGRSPS 267 +++S+ R S Sbjct: 76 RAISTLNGLRLQSKTIKVSYARPSS 100
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 33.9 bits (76), Expect = 0.35 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 159 +I+VG L +V+E L VFA YG V V++P + G Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETG 39
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 33.9 bits (76), Expect = 0.35 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSA 189 IF+ L P E AL Q+F P+G V VKI P +C GFV N A Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEA 456 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI-------PVGKRCGFVQYANRPSA 189 ++V GL +T+ L+ +FAP+G ++ +I K GF+++ R A Sbjct: 250 LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEA 303 Score = 29.6 bits (65), Expect = 6.7 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 19/109 (17%) Frame = +1 Query: 1 TNTQXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI----------PVGK 150 + +Q + + T + V L +TED ++ +F+ GE+ VK+ P+ Sbjct: 135 SGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNP 194 Query: 151 RC---------GFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPSN 270 + GFV Y AE +++S+ R S+ Sbjct: 195 QAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSD 243
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 33.9 bits (76), Expect = 0.35 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------RCGFVQYANRPSAE 192 + T++VGGLD V+E L ++F G VV+ +P + GFV++ + A+ Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68 Score = 30.0 bits (66), Expect = 5.1 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +1 Query: 4 NTQXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVV 126 N A + N IF+G LDP + E L F+ +G ++ Sbjct: 87 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 33.5 bits (75), Expect = 0.46 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXX 228 +F+G L TE ++ +F YG+V+ I K GFV ++ +AE Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLH 61 Query: 229 XXNVRLSWGRSPSNKQTQ 282 N+ + ++ S T+ Sbjct: 62 GVNINVEASKNKSKTSTK 79
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 33.5 bits (75), Expect = 0.46 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXX 228 +F+G L TE ++ +F YG+V+ I K GFV ++ +AE Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLH 61 Query: 229 XXNVRLSWGRSPSNKQTQ 282 N+ + ++ S T+ Sbjct: 62 GVNINVEASKNKSKTSTK 79
>SSB1_YEAST (P10080) Single-stranded nucleic acid-binding protein| Length = 294 Score = 33.5 bits (75), Expect = 0.46 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFA-PYGEVVHVKIPV 144 DP +T IF+G + TED LKQ+F +G+ V V+IP+ Sbjct: 34 DPEDT-IFIGNVAHECTEDDLKQLFVEEFGDEVSVEIPI 71
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 33.5 bits (75), Expect = 0.46 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAE 192 P +F+ L + L Q+F P+G VV K+ + K+ GFV Y N SA+ Sbjct: 398 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQ 456
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 33.5 bits (75), Expect = 0.46 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAE 192 P +F+ L + L Q+F P+G VV K+ + K+ GFV Y N SA+ Sbjct: 398 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQ 456
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 33.5 bits (75), Expect = 0.46 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%) Frame = +1 Query: 34 PNNT-TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG-----FVQYANRPSAEX 195 P +T T+F+G L+ ++T L+ F +GE++ + I K+ G F QY++ S Sbjct: 652 PKSTRTLFIGNLEKDITAGELRSHFEAFGEIIEIDI---KKQGLNAYAFCQYSDIVSVVK 708 Query: 196 XXXXXXXXXXXXXNVRLSWGRS-PSN 270 ++L +G+S P+N Sbjct: 709 AMRKMDGEHLGSNRIKLGFGKSMPTN 734
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 33.5 bits (75), Expect = 0.46 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXX 228 +F+G L TE ++ +F YG+V+ I K GFV ++ +AE Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLH 61 Query: 229 XXNVRLSWGRSPSNKQTQ 282 N+ + ++ S T+ Sbjct: 62 GVNINVEASKNKSKASTK 79
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 33.5 bits (75), Expect = 0.46 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXX 228 +F+G L TE ++ +F YG+V+ I K GFV ++ +AE Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLH 61 Query: 229 XXNVRLSWGRSPSNKQTQ 282 N+ + ++ S T+ Sbjct: 62 GVNINVEASKNKSKASTK 79
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 33.5 bits (75), Expect = 0.46 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXX 228 +F+G L TE ++ +F YG+V+ I K GFV ++ +AE Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLH 61 Query: 229 XXNVRLSWGRSPSNKQTQ 282 N+ + ++ S T+ Sbjct: 62 GVNINVEASKNKSKASTK 79
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 33.5 bits (75), Expect = 0.46 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 159 +T +F+GGL + +L+ FA +G+VV K+ V + G Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETG 73
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 33.5 bits (75), Expect = 0.46 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Frame = +1 Query: 4 NTQXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFV 165 N + Q +F+GGL NVTE L+ F YG+V V I + GF+ Sbjct: 83 NPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFL 142 Query: 166 QYANRPSAE 192 + S E Sbjct: 143 SFEEESSVE 151
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 33.5 bits (75), Expect = 0.46 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------RCGFVQYANRPSAE 192 + TI+VGGLD V+E L ++ G VV V +P + GFV++ A+ Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68 Score = 32.3 bits (72), Expect = 1.0 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = +1 Query: 4 NTQXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHV 132 N A N IFVG LDP V E L F+ +G ++ V Sbjct: 87 NKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQV 129
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 33.5 bits (75), Expect = 0.46 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXX 228 +F+G L TE ++ +F YG+V+ I K GFV ++ +AE Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLH 61 Query: 229 XXNVRLSWGRSPSNKQTQ 282 N+ + ++ S T+ Sbjct: 62 GVNINVEASKNKSKASTK 79
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 33.5 bits (75), Expect = 0.46 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXX 228 +F+G L TE ++ +F YG+V+ I K GFV ++ +AE Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLH 61 Query: 229 XXNVRLSWGRSPSNKQTQ 282 N+ + ++ S T+ Sbjct: 62 GVNINVEASKNKSKASTK 79
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 33.1 bits (74), Expect = 0.60 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Frame = +1 Query: 1 TNTQXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV---VHVKIPVGKRC---GF 162 T+ S +DP +F+GGL + D+L+ F+ +GE+ + ++ P KR GF Sbjct: 9 TSGSANDSQHDPGK--MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGF 66 Query: 163 VQYANRPSAE 192 V +A+ S + Sbjct: 67 VTFADPASVD 76 Score = 30.0 bits (66), Expect = 5.1 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAE 192 IFVGGL N + +KQ F +G+V + K GFV + N E Sbjct: 112 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE 165
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 33.1 bits (74), Expect = 0.60 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Frame = +1 Query: 1 TNTQXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV---VHVKIPVGKRC---GF 162 T+ S +DP +F+GGL + D+L+ F+ +GE+ + ++ P KR GF Sbjct: 9 TSGSANDSQHDPGK--MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGF 66 Query: 163 VQYANRPSAE 192 V +A+ S + Sbjct: 67 VTFADPASVD 76 Score = 30.0 bits (66), Expect = 5.1 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAE 192 IFVGGL N + +KQ F +G+V + K GFV + N E Sbjct: 112 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE 165
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 33.1 bits (74), Expect = 0.60 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Frame = +1 Query: 22 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRP 183 S D T IFVGGL + T+ +L++ F +G++ + ++ GFV A+R Sbjct: 25 SRKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 84 Query: 184 SAE 192 +A+ Sbjct: 85 AAD 87
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 33.1 bits (74), Expect = 0.60 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPSAEXXXXX 207 +++VG L P+VTE L + F+P G ++ ++I +V + + AE Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71 Query: 208 XXXXXXXXXNVRLSWG-RSPSNKQT 279 VR+ W R PS +++ Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKS 96
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 33.1 bits (74), Expect = 0.60 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%) Frame = +1 Query: 25 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------RCGFVQYANRPS 186 + + + T + V L N+T++ LK +F GE+ K+ K GFV Y + Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92 Query: 187 AEXXXXXXXXXXXXXXNVRLSWGRSPS 267 AE +++S+ R S Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSS 119 Score = 32.7 bits (73), Expect = 0.79 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPSAE 192 + ++V GL +T+ L+Q+F+ YG ++ +I + + GF+++ R AE Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180 Score = 31.2 bits (69), Expect = 2.3 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 IFV L P+ E L Q+F P+G V +VK+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKV 307
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 33.1 bits (74), Expect = 0.60 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%) Frame = +1 Query: 25 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------RCGFVQYANRPS 186 + + + T + V L N+T++ LK +F GE+ K+ K GFV Y + Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92 Query: 187 AEXXXXXXXXXXXXXXNVRLSWGRSPS 267 AE +++S+ R S Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSS 119 Score = 32.7 bits (73), Expect = 0.79 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPSAE 192 + ++V GL +T+ L+Q+F+ YG ++ +I + + GF+++ R AE Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180 Score = 31.2 bits (69), Expect = 2.3 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 IFV L P+ E L Q+F P+G V +VK+ Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKV 308
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 33.1 bits (74), Expect = 0.60 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%) Frame = +1 Query: 25 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------RCGFVQYANRPS 186 + + + T + V L N+T++ LK +F GE+ K+ K GFV Y + Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92 Query: 187 AEXXXXXXXXXXXXXXNVRLSWGRSPS 267 AE +++S+ R S Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSS 119 Score = 32.7 bits (73), Expect = 0.79 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPSAE 192 + ++V GL +T+ L+Q+F+ YG ++ +I + + GF+++ R AE Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180 Score = 31.2 bits (69), Expect = 2.3 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 IFV L P+ E L Q+F P+G V +VK+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKV 307
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 33.1 bits (74), Expect = 0.60 Identities = 15/37 (40%), Positives = 24/37 (64%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 159 IF+GGL +TE + VF+ YGE+V++ + K+ G Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTG 74
>NELFE_MOUSE (P19426) Negative elongation factor E (NELF-E) (RD protein)| Length = 375 Score = 32.7 bits (73), Expect = 0.79 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 T++V G D +T L+ F+P+G ++ + + + C FV Y SA+ Sbjct: 267 TLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESAD 313
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 32.7 bits (73), Expect = 0.79 Identities = 23/98 (23%), Positives = 38/98 (38%) Frame = +1 Query: 1 TNTQXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANR 180 T +S N ++ I V T + L ++F PYG++ + +P VQ+ + Sbjct: 518 TKFSQLKSTNQRDDKVILVKNFPFGTTREELGEMFLPYGKLERLLMPPAGTIAIVQFRDT 577 Query: 181 PSAEXXXXXXXXXXXXXXNVRLSWGRSPSNKQTQPQEA 294 SA + L R P + T+P EA Sbjct: 578 TSARAAFTKLSYKRFKDGIIYLE--RGPKDCFTKPAEA 613
>NELFE_HUMAN (P18615) Negative elongation factor E (NELF-E) (RD protein)| Length = 380 Score = 32.7 bits (73), Expect = 0.79 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 T++V G D +T L+ F+P+G ++ + + + C FV Y SA+ Sbjct: 263 TLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESAD 309
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 32.7 bits (73), Expect = 0.79 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPSAE 192 + ++V GL +T+ L+Q+F+ YG ++ +I + + GF+++ R AE Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180 Score = 31.2 bits (69), Expect = 2.3 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 IFV L P+ E L Q+F P+G V +VK+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKV 307 Score = 30.4 bits (67), Expect = 3.9 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 6/87 (6%) Frame = +1 Query: 25 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------RCGFVQYANRPS 186 + + + T + L N+T++ LK +F GE+ K+ K GFV Y + Sbjct: 33 NTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92 Query: 187 AEXXXXXXXXXXXXXXNVRLSWGRSPS 267 AE +++S+ R S Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSS 119
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 32.3 bits (72), Expect = 1.0 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 159 +F+ + + TE+ KQ+F+PYGE+ V + V R G Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTG 339
>NRD1_YEAST (P53617) Protein NRD1| Length = 575 Score = 32.3 bits (72), Expect = 1.0 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 T+F+GG+ N+ E L V P+ EV V + ++ FV+ +R AE Sbjct: 340 TLFIGGVPLNMKEWDLANVLKPFAEVQSVILNNSRKHAFVKVYSRHEAE 388
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 32.3 bits (72), Expect = 1.0 Identities = 12/40 (30%), Positives = 25/40 (62%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQ 168 +FV G+ TE+ + FA YGE+ ++ + + +R G+++ Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLK 114
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 32.3 bits (72), Expect = 1.0 Identities = 12/40 (30%), Positives = 25/40 (62%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQ 168 +FV G+ TE+ + FA YGE+ ++ + + +R G+++ Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLK 114
>CWC2_USTMA (Q4PA86) Pre-mRNA-splicing factor CWC2| Length = 480 Score = 32.3 bits (72), Expect = 1.0 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 3/79 (3%) Frame = +1 Query: 73 NVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQY---ANRPSAEXXXXXXXXXXXXXXNVR 243 N TE +++ F+ +GE+ +++ G+ C FV + AN A+ NVR Sbjct: 254 NATERVVRRHFSEWGEIDRLRVLTGRSCAFVTFKYEANAQFAKEAMLNQSLDHNEIINVR 313 Query: 244 LSWGRSPSNKQTQPQEATQ 300 W N Q + Q Sbjct: 314 --WASDDPNPAAQKRNQEQ 330
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 32.3 bits (72), Expect = 1.0 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHV---KIPVGKRC---GFVQYAN 177 +F+GGLD T++ LK F +G +V V K P KR GF+ Y++ Sbjct: 33 LFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSH 81
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.3 bits (72), Expect = 1.0 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI--------PVGKRCGFVQYANRPSAEXXXX 204 ++VG LDP+VTED L + F P G + +I P+G G+V + AE Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG--YGYVNFRFPADAEWALN 77 Query: 205 XXXXXXXXXXNVRLSWGR 258 RL W + Sbjct: 78 TMNFDLINGKPFRLMWSQ 95 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Frame = +1 Query: 43 TTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYANRPSAE 192 T +FV + ++ ++ LK++F YG VK+ K GFV+Y +A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.3 bits (72), Expect = 1.0 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI--------PVGKRCGFVQYANRPSAEXXXX 204 ++VG LDP+VTED L + F P G + +I P+G G+V + AE Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG--YGYVNFRFPADAEWALN 77 Query: 205 XXXXXXXXXXNVRLSWGR 258 RL W + Sbjct: 78 TMNFDLINGKPFRLMWSQ 95 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Frame = +1 Query: 43 TTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYANRPSAE 192 T +FV + ++ ++ LK++F YG VK+ K GFV+Y +A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.3 bits (72), Expect = 1.0 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI--------PVGKRCGFVQYANRPSAEXXXX 204 ++VG LDP+VTED L + F P G + +I P+G G+V + AE Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG--YGYVNFRFPADAEWALN 77 Query: 205 XXXXXXXXXXNVRLSWGR 258 RL W + Sbjct: 78 TMNFDLINGKPFRLMWSQ 95 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Frame = +1 Query: 43 TTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYANRPSAE 192 T +FV + ++ ++ LK++F YG VK+ K GFV+Y +A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.3 bits (72), Expect = 1.0 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI--------PVGKRCGFVQYANRPSAEXXXX 204 ++VG LDP+VTED L + F P G + +I P+G G+V + AE Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG--YGYVNFRFPADAEWALN 77 Query: 205 XXXXXXXXXXNVRLSWGR 258 RL W + Sbjct: 78 TMNFDLINGKPFRLMWSQ 95 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Frame = +1 Query: 43 TTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYANRPSAE 192 T +FV + ++ ++ LK++F YG VK+ K GFV+Y +A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.3 bits (72), Expect = 1.0 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI--------PVGKRCGFVQYANRPSAEXXXX 204 ++VG LDP+VTED L + F P G + +I P+G G+V + AE Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG--YGYVNFRFPADAEWALN 77 Query: 205 XXXXXXXXXXNVRLSWGR 258 RL W + Sbjct: 78 TMNFDLINGKPFRLMWSQ 95 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Frame = +1 Query: 43 TTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYANRPSAE 192 T +FV + ++ ++ LK++F YG VK+ K GFV+Y +A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.3 bits (72), Expect = 1.0 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI--------PVGKRCGFVQYANRPSAEXXXX 204 ++VG LDP+VTED L + F P G + +I P+G G+V + AE Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG--YGYVNFRFPADAEWALN 77 Query: 205 XXXXXXXXXXNVRLSWGR 258 RL W + Sbjct: 78 TMNFDLINGKPFRLMWSQ 95 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Frame = +1 Query: 43 TTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYANRPSAE 192 T +FV + ++ ++ LK++F YG VK+ K GFV+Y +A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 32.3 bits (72), Expect = 1.0 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = +1 Query: 19 QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 189 + + + +NT +FV +V E L ++F P+G + VKI G FV++ SA Sbjct: 117 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNG--FAFVEFEEAESA 171
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 32.3 bits (72), Expect = 1.0 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHV 132 +F+GGL+ E AL+ VF YG +V V Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEV 37
>CWC2_MAGGR (Q51TF7) Pre-mRNA-splicing factor CWC2| Length = 580 Score = 32.3 bits (72), Expect = 1.0 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQV---FAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXX 210 N T++VG + +VT+D + V FA +G+V +++ + F+ Y N +A+ Sbjct: 166 NRTVYVGRI--HVTDDIEEVVARHFAEWGQVERIRVLNQRGVAFITYTNEANAQFAKEAM 223 Query: 211 XXXXXXXXNV-RLSWGRSPSNKQTQPQEA 294 + + W + N Q +EA Sbjct: 224 AHQSLDHNEILNVRWATADPNPMAQAREA 252
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 32.0 bits (71), Expect = 1.3 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG------FVQYANRPSAE 192 +T ++V L +T+D L +F YG +V I K G FV+Y R A+ Sbjct: 212 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 268
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 32.0 bits (71), Expect = 1.3 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG------FVQYANRPSAE 192 +T ++V L +T+D L +F YG +V I K G FV+Y R A+ Sbjct: 210 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 266
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 32.0 bits (71), Expect = 1.3 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGF 162 IFVGG+ + ED L++ F YG++ ++I GK+ GF Sbjct: 107 IFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGF 148
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 IFV L P E L Q+F P+G V +VK+ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKV 315 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPSAE 192 + ++V GL +++ ++Q+F+ YG ++ +I V + GF+++ R AE Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAE 180
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 IFV L P E L Q+F P+G V +VK+ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKV 315 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPSAE 192 + ++V GL +++ ++Q+F+ YG ++ +I V + GF+++ R AE Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 32.0 bits (71), Expect = 1.3 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHV---KIPVGKRCGFVQYANRPSAEXXXXXXXX 216 T+F+G L+ T L+ +F +GE+V + K+ + F+QY + S Sbjct: 440 TLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDG 499 Query: 217 XXXXXXNVRLSWGRS-PSN 270 ++L +G+S P+N Sbjct: 500 EYLGNNRLKLGFGKSMPTN 518
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG------FVQYANRPSAE 192 +T ++V L +T+D L+++F YG +V I K G FV++ R A+ Sbjct: 187 DTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQ 243
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG------FVQYANRPSAE 192 +T ++V L +T+D L+++F YG +V I K G FV++ R A+ Sbjct: 170 DTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQ 226
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Frame = +1 Query: 55 VGGLDPNVTEDALKQVFAPYGEVVHVKIP-----VGKRCGFVQYANRPSAEXXXXXXXXX 219 V + N+T++ +K +F P+G++ V + K G++QY N SA Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGF 403 Query: 220 XXXXXNVRLSWGRSPSNKQT 279 N+R+ G +T Sbjct: 404 DLAGRNMRVCLGNDKFTTET 423
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 32.0 bits (71), Expect = 1.3 Identities = 11/28 (39%), Positives = 21/28 (75%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHV 132 ++VG L N+TED L+ +F P+G++ ++ Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNI 292
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSAEXXXXX 207 +++VG L P+VTE L + F+P G ++ +++ + +R +V + AE Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 208 XXXXXXXXXNVRLSWG-RSPSNKQT 279 VR+ W R PS +++ Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKS 96
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSAEXXXXX 207 +++VG L P+VTE L + F+P G ++ +++ + +R +V + AE Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 208 XXXXXXXXXNVRLSWG-RSPSNKQT 279 VR+ W R PS +++ Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKS 96
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSAEXXXXX 207 +++VG L P+VTE L + F+P G ++ +++ + +R +V + AE Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 208 XXXXXXXXXNVRLSWG-RSPSNKQT 279 VR+ W R PS +++ Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKS 96
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSAEXXXXX 207 +++VG L P+VTE L + F+P G ++ +++ + +R +V + AE Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 208 XXXXXXXXXNVRLSWG-RSPSNKQT 279 VR+ W R PS +++ Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKS 96
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 32.0 bits (71), Expect = 1.3 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +1 Query: 37 NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 189 + TTI V + + +L +FAP+G++ V +P G V++ N A Sbjct: 415 SQTTILVKNIPYGTSIQSLTDLFAPHGKLTRVLLPPAGTLGVVEFENHMDA 465
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 32.0 bits (71), Expect = 1.3 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHV---KIPVGKRCGFVQYANRPSAEXXXXXXXX 216 T+F+G L+ T L+ +F +GE+V + K+ + F+QY + S Sbjct: 439 TLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDG 498 Query: 217 XXXXXXNVRLSWGRS-PSN 270 ++L +G+S P+N Sbjct: 499 EYLGNNRLKLGFGKSMPTN 517
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 32.0 bits (71), Expect = 1.3 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRCGF 162 +FV LD +V ++ L++ FAPYG + K+ GK GF Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGF 363 Score = 31.6 bits (70), Expect = 1.8 Identities = 11/34 (32%), Positives = 24/34 (70%) Frame = +1 Query: 37 NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 ++ +++VG L+P+V+E L +F+P G V +++ Sbjct: 35 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRV 68
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSAEXXXXX 207 +++VG L P+VTE L + F+P G ++ +++ + +R +V + AE Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 208 XXXXXXXXXNVRLSWG-RSPSNKQT 279 VR+ W R PS +++ Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKS 96
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC---GFVQY 171 P++ +F+G L V + LK F YG VV ++I G + GFV + Sbjct: 337 PDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVF 385
>YP184_YEAST (Q08925) Putative RNA-binding protein YPL184C| Length = 612 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 79 TEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 189 TE L+ +F YGEV + K C F+ Y N +A Sbjct: 543 TESNLRHIFQQYGEVEQINFLPEKNCCFINYTNISNA 579
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 32.0 bits (71), Expect = 1.3 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHV 132 +F+GGL+ E AL+ VF YG +V + Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEI 37
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 32.0 bits (71), Expect = 1.3 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHV 132 +F+GGL+ E AL+ VF YG +V + Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEI 37
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +1 Query: 16 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV---VHVKIPVGKRC---GFVQYAN 177 A D+ + +F+GGL T++ L++ F +GEV + ++ P+ KR GFV + + Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70 Query: 178 RPSAE 192 + + Sbjct: 71 QAGVD 75
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +1 Query: 16 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV---VHVKIPVGKRC---GFVQYAN 177 A D+ + +F+GGL T++ L++ F +GEV + ++ P+ KR GFV + + Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70 Query: 178 RPSAE 192 + + Sbjct: 71 QAGVD 75
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +1 Query: 16 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV---VHVKIPVGKRC---GFVQYAN 177 A D+ + +F+GGL T++ L++ F +GEV + ++ P+ KR GFV + + Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70 Query: 178 RPSAE 192 + + Sbjct: 71 QAGVD 75 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEV 123 IFVGGL N T + +KQ F +G+V Sbjct: 111 IFVGGLSVNTTVEDVKQYFEQFGKV 135
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 31.6 bits (70), Expect = 1.8 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKR------CGFVQYANRPSAE 192 +FVG + TE+ ++ F +G V+ V + KR C FV+YA A+ Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 175
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +1 Query: 37 NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKR---CGFVQYANRPSAE 192 ++ T++VG L ++ E ++ +F+ YG VV + + V R FV++ + AE Sbjct: 5 SSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAE 59
>SLT11_SCHPO (O59800) Pre-mRNA-splicing factor slt11 (Complexed with cdc5| protein 5) (Cell cycle control protein cwf5) Length = 354 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXX 210 D ++F+ G++ + + +++ F YG + V +C FV + R SAE Sbjct: 208 DKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVCSHRAKCAFVNFKTRSSAEIAAAAS 267 Query: 211 XXXXXXXXNVRL--SWGRSPS 267 RL WG+ S Sbjct: 268 PDGNVVIEGFRLKVQWGKPRS 288
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG------KRCGFVQYANRPSAE 192 D + ++FVG + TE+ LK +F+ G VV ++ K GF +Y ++ +A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 193 XXXXXXXXXXXXXXNVRLSWGRSPSNKQ 276 +R+ S NK+ Sbjct: 72 SAMRNLNGREFSGRALRVDNAASEKNKE 99
>SLT11_USTMA (Q4PGU6) Pre-mRNA-splicing factor SLT11| Length = 324 Score = 31.6 bits (70), Expect = 1.8 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 8/96 (8%) Frame = +1 Query: 28 NDPNNTTIFVGGLDP-NVTEDALKQVFAPYG------EVVHVKIPVGKRCGFVQYANRPS 186 +D + ++F+ L P ++ E +++Q F ++ + + C FV +A R Sbjct: 222 SDASVRSLFISNLPPEHLEEPSIRQFFLDLAPPLQAQDIKSITLVRASNCAFVNFATRDH 281 Query: 187 AEXXXXXXX-XXXXXXXNVRLSWGRSPSNKQTQPQE 291 AE +RL WGRS K+ + E Sbjct: 282 AELAARRCEPKMRLGDKEIRLMWGRSRPVKRNEENE 317
>RBM16_HUMAN (Q9UPN6) Putative RNA-binding protein 16 (RNA-binding motif protein| 16) Length = 1271 Score = 31.6 bits (70), Expect = 1.8 Identities = 13/50 (26%), Positives = 27/50 (54%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 189 +TT++VG +D T+ L +F +G++ + + + C +V +R A Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDA 525
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Frame = +1 Query: 28 NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGFVQYANRPSA 189 N ++V LD + +D L++ F+PYG + K+ K GFV +++ A Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEA 346 Score = 30.4 bits (67), Expect = 3.9 Identities = 11/31 (35%), Positives = 22/31 (70%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 +++VG L P+VTE L + F+P G ++ +++ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRV 42
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Frame = +1 Query: 28 NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGFVQYANRPSA 189 N ++V LD + +D L++ F+PYG + K+ K GFV +++ A Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEA 346 Score = 30.0 bits (66), Expect = 5.1 Identities = 10/31 (32%), Positives = 22/31 (70%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 ++++G L P+VTE L + F+P G ++ +++ Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRV 42
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG------KRCGFVQYANRPSAE 192 D + ++FVG + TE+ LK +F+ G VV ++ K GF +Y ++ +A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 193 XXXXXXXXXXXXXXNVRLSWGRSPSNKQ 276 +R+ S NK+ Sbjct: 72 SAMRNLNGREFSGRALRVDNAASEKNKE 99
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%) Frame = +1 Query: 16 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV---VHVKIPVG--KRCGFVQYANR 180 ++S P+ T ++V L +T+D LK+ F YG++ V +K G + GFV + + Sbjct: 216 SESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSP 275 Query: 181 PSA 189 +A Sbjct: 276 EAA 278
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 31.6 bits (70), Expect = 1.8 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 159 +F+ + + TED K++F+PYGE+ V + V R G Sbjct: 327 LFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTG 363
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 6/54 (11%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPSAE 192 +FVG LD E++L + F+ G+V +V+I VGK +VQ+ + S E Sbjct: 276 VFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVE 329
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG------KRCGFVQYANRPSAE 192 D + ++FVG + TE+ LK +F+ G VV ++ K GF +Y ++ +A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 193 XXXXXXXXXXXXXXNVRLSWGRSPSNKQ 276 +R+ S NK+ Sbjct: 72 SAMRNLNGREFSGRALRVDNAASEKNKE 99
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG------KRCGFVQYANRPSAE 192 D + ++FVG + TE+ LK +F+ G VV ++ K GF +Y ++ +A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 193 XXXXXXXXXXXXXXNVRLSWGRSPSNKQ 276 +R+ S NK+ Sbjct: 72 SAMRNLNGREFSGRALRVDNAASEKNKE 99
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG------KRCGFVQYANRPSAE 192 D + ++FVG + TE+ LK +F+ G VV ++ K GF +Y ++ +A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 193 XXXXXXXXXXXXXXNVRLSWGRSPSNKQ 276 +R+ S NK+ Sbjct: 72 SAMRNLNGREFSGRALRVDNAASEKNKE 99
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 564 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = +1 Query: 43 TTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 T ++VGGL PN + AL + F +G + + G ++QY + +A+ Sbjct: 91 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQ 140 Score = 31.2 bits (69), Expect = 2.3 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Frame = +1 Query: 25 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYG--EVVHVKIPV---GKRCGFVQYANRPSA 189 D+ +F+G LD +V+E L++ F YG E V +K P G F+++ N A Sbjct: 4 DDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMA 63 Query: 190 EXXXXXXXXXXXXXXNVRLSWGRS 261 +++ +G++ Sbjct: 64 HRAKVAMSGRVIGRNPIKIGYGKA 87
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 31.2 bits (69), Expect = 2.3 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV 144 ++VGGL V + L F P+G++ ++IP+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL 39
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 31.2 bits (69), Expect = 2.3 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV 144 ++VGGL V + L F P+G++ ++IP+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL 39
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 31.2 bits (69), Expect = 2.3 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 159 +F+ + TED +++F+PYGE+ V I V R G Sbjct: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTG 368
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = +1 Query: 43 TTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 T ++VGGL PN + AL + F +G + + G ++QY + +A+ Sbjct: 91 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQ 140 Score = 31.2 bits (69), Expect = 2.3 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Frame = +1 Query: 25 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYG--EVVHVKIPV---GKRCGFVQYANRPSA 189 D+ +F+G LD +V+E L++ F YG E V +K P G F+++ N A Sbjct: 4 DDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMA 63 Query: 190 EXXXXXXXXXXXXXXNVRLSWGRS 261 +++ +G++ Sbjct: 64 HRAKVAMSGRVIGRNPIKIGYGKA 87
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG------KRCGFVQYANRPSAE 192 D + ++FVG + TE+ LK +F+ G VV ++ K GF +Y ++ +A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 193 XXXXXXXXXXXXXXNVRLSWGRSPSNKQ 276 +R+ S NK+ Sbjct: 72 SAMRNLNGREFSGRALRVDNAASEKNKE 99
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 30.8 bits (68), Expect = 3.0 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 5/48 (10%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKR--CGFVQYAN 177 + + L +ED LK VFA +G V+ V I P GK GFVQ+ N Sbjct: 115 LIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKN 162
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 6/74 (8%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGF------VQYANRPSAEXXXXXX 210 +FV + ED +++ F YGE+ ++ + + +R GF V+Y A Sbjct: 75 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134 Query: 211 XXXXXXXXNVRLSW 252 +++ W Sbjct: 135 NGAEIMGQTIQVDW 148
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 30.8 bits (68), Expect = 3.0 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Frame = +1 Query: 28 NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGFVQYANRPSA 189 N ++V LD + +D L++ F PYG + K+ K GFV +++ A Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEA 346 Score = 30.0 bits (66), Expect = 5.1 Identities = 10/31 (32%), Positives = 22/31 (70%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 ++++G L P+VTE L + F+P G ++ +++ Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRV 42
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK----RCG--FVQYANRPSAEXXXXX 207 T++VG L TE+ + ++F+ G++ + + + K CG FV+Y +R AE Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 208 XXXXXXXXXNVRLSW 252 +R W Sbjct: 101 INGTRLDDRIIRTDW 115
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK----RCG--FVQYANRPSAEXXXXX 207 T++VG L TE+ + ++F+ G++ + + + K CG FV+Y +R AE Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 208 XXXXXXXXXNVRLSW 252 +R W Sbjct: 101 INGTRLDDRIIRTDW 115
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK----RCG--FVQYANRPSAEXXXXX 207 T++VG L TE+ + ++F+ G++ + + + K CG FV+Y +R AE Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 208 XXXXXXXXXNVRLSW 252 +R W Sbjct: 101 INGTRLDDRIIRTDW 115
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 30.8 bits (68), Expect = 3.0 Identities = 21/84 (25%), Positives = 37/84 (44%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXX 228 +FV L VTE+ L++ F+ +G++ VK K FV + +R +A Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--KLKDYAFVHFEDRGAAVKAMDEMNGKEIE 400 Query: 229 XXNVRLSWGRSPSNKQTQPQEATQ 300 + + + P K+ + Q A Q Sbjct: 401 GEEIEIVLAKPPDKKRKERQAARQ 424
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 30.4 bits (67), Expect = 3.9 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 11/59 (18%) Frame = +1 Query: 28 NDPNNT-----TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG------FVQY 171 NDPN T+FV ++ + TE L++ F YG + + + KR G F++Y Sbjct: 93 NDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEY 151
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 30.4 bits (67), Expect = 3.9 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +1 Query: 22 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 +D N++++ G LDP VTE L +F VV V++ Sbjct: 42 ADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRV 80
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 30.4 bits (67), Expect = 3.9 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = +1 Query: 31 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRCGFVQYANRPSAE 192 D T ++VG L V +D L+ F YG++ V I P G FV++ +R AE Sbjct: 3 DQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPG--FAFVEFEHRDDAE 57
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 30.4 bits (67), Expect = 3.9 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV---GKRCG--FVQYAN 177 + + L +ED LK VF YG V+ V IP GK G FVQ+ N Sbjct: 115 LIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKN 162
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 30.4 bits (67), Expect = 3.9 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPS 186 +IFVG LD E++L + F P G++ +V+I +GK +VQ+ + S Sbjct: 280 SIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQS 332
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 30.4 bits (67), Expect = 3.9 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 11/59 (18%) Frame = +1 Query: 28 NDPNNT-----TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG------FVQY 171 NDPN T+FV ++ + TE L++ F YG + + + KR G F++Y Sbjct: 93 NDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEY 151
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 30.4 bits (67), Expect = 3.9 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK--RCGFVQYANRPSAEXXXXXXXXXX 222 ++VG L +V E ++ +F YG + +V I G+ FV++ + AE Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70 Query: 223 XXXXNVRLSWGR 258 +R+ + R Sbjct: 71 FDGRRIRVEFTR 82
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 30.4 bits (67), Expect = 3.9 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +1 Query: 37 NNTTIFVGGLDPNVTEDALKQVFAPYG-EVVHVKIPVGKRCGFVQYANRPSA 189 +++ IFV L P +TE ++ F+ G +V VK+ + GFV Y + A Sbjct: 3 SSSRIFVKNLPPTITEAEFRKHFSAEGRQVTDVKLIPARHIGFVGYKSAEDA 54
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYG---EVVHVKIPVGKRC---GFVQYAN 177 +FVGGL+ N E AL+ F+ +G EVV VK +R GF+ + N Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTN 56
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 7/94 (7%) Frame = +1 Query: 16 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI----PVGKRC--GFVQYAN 177 + + P +++VG L P+VTE L FA + + V++ G+ G+ + + Sbjct: 15 SSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLS 74 Query: 178 RPSAEXXXXXXXXXXXXXXNVRLSWG-RSPSNKQ 276 R A +R+ W R+P ++ Sbjct: 75 RQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARR 108
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 30.0 bits (66), Expect = 5.1 Identities = 19/84 (22%), Positives = 36/84 (42%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXX 228 +FV L VTE+ L++ F+ +G++ VK K F+ + R A Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--KLKDYAFIHFDERDGAVKAMEEMNGKDLE 397 Query: 229 XXNVRLSWGRSPSNKQTQPQEATQ 300 N+ + + + P K+ + + Q Sbjct: 398 GENIEIVFAKPPDQKRKERKAQRQ 421
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK----RCG--FVQYANRPSAEXXXXX 207 T++VG L TE+ + ++F+ G+V + + + K CG FV+Y R A Sbjct: 33 TLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAGTAMRF 92 Query: 208 XXXXXXXXXNVRLSW 252 VR W Sbjct: 93 INGTRLDDRIVRTDW 107
>RNP1_CAEEL (Q10667) RNA-binding protein rnp-1| Length = 305 Score = 30.0 bits (66), Expect = 5.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 +FVG L NV + LKQVF P+ +V I Sbjct: 5 LFVGNLPDNVDSNKLKQVFQPFCKVTECDI 34
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 30.0 bits (66), Expect = 5.1 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +1 Query: 25 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV 123 D D +N+ I+V GL+ NVT D L F G V Sbjct: 354 DEDSDNSAIYVQGLNDNVTLDDLADFFKQCGVV 386
>RL17_PSEAE (O52761) 50S ribosomal protein L17| Length = 129 Score = 30.0 bits (66), Expect = 5.1 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = -1 Query: 180 PVSILNKATSLPNRDLDMDDFPIWSKHLFQGIFSDIGVKAANKYGGIVRII 28 P+ L K S+ NR L D SK +F+D+G + AN+ GG +RI+ Sbjct: 50 PLITLAKEDSVANRRLAFDRTR--SKAAVGKLFNDLGKRYANRPGGYLRIL 98
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 30.0 bits (66), Expect = 5.1 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 6/48 (12%) Frame = +1 Query: 46 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQY 171 ++FVG LD E++L + F P G++ +V+I +GK +VQ+ Sbjct: 360 SVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQF 407
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYG---EVVHVKIPVGKRC---GFVQYAN 177 +FVGGL+ N E AL+ F+ +G EVV VK +R GF+ + N Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTN 56
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 30.0 bits (66), Expect = 5.1 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 Query: 52 FVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 159 FVGGL + ++L+ FA YGE++ K+ + G Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETG 46
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 29.6 bits (65), Expect = 6.7 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Frame = +1 Query: 4 NTQXAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG------FV 165 N Q AQ D T+FV ++ + TE L++ F YG + + + KR G F+ Sbjct: 93 NDQNAQGDAFK---TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFI 149 Query: 166 QY 171 +Y Sbjct: 150 EY 151
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 29.6 bits (65), Expect = 6.7 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 159 +FVGG+ + E L++ F YG++ ++I K+ G Sbjct: 102 LFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSG 138
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 29.6 bits (65), Expect = 6.7 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV 144 P NT++FV + + + L++ F YG +V V +P+ Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPL 43
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 29.6 bits (65), Expect = 6.7 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV 144 P NT++FV + + + L++ F YG +V V +P+ Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPL 43
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 6/59 (10%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG------FVQYANRPSAE 192 P +FV L+P ++ L+ +F+ +G+++ ++ K G F+++ N+ S E Sbjct: 241 PPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVE 299
>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2| Length = 365 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +1 Query: 37 NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQ 168 + T +FVG + P T + + F YG+++ K+ G GFV+ Sbjct: 2 SETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNG--FGFVE 43
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 29.6 bits (65), Expect = 6.7 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAE 192 +FVGGL +V E L + F+ +G V +I K+ GFV + N +A+ Sbjct: 100 LFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAAD 153
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 29.6 bits (65), Expect = 6.7 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 138 ++V LD + +D L+ F+PYG + K+ Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKV 318 Score = 29.3 bits (64), Expect = 8.7 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Frame = +1 Query: 43 TTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYANRPSAE 192 T ++V + ++ LK+ F PYG++ K+ K GFV + +AE Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAE 237
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Frame = +1 Query: 40 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG------FVQYANRPSAE 192 +T ++V L +T+D L +F YG +V I K G FV++ R A+ Sbjct: 195 DTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQ 251
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSAE 192 +F+G L VTE+ LK +F Y V K+ V K+ G++ + ++ AE Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAE 146
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/84 (22%), Positives = 36/84 (42%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXX 228 +FV L VTE+ L++ F+ +G++ VK K F+ + R A Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVK--KLKDYAFIHFDERDGAVKAMEEMNGKDLE 397 Query: 229 XXNVRLSWGRSPSNKQTQPQEATQ 300 N+ + + + P K+ + + Q Sbjct: 398 GENIEIVFAKPPDQKRKERKAQRQ 421
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 29.3 bits (64), Expect = 8.7 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 6/48 (12%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEV---VHVKIPVGKRC---GFVQYA 174 +F+GGL T+D+L++ F +G++ V ++ P KR GFV Y+ Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYS 76
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/84 (22%), Positives = 36/84 (42%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXX 228 +FV L VTE+ L++ F+ +G++ VK K F+ + R A Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERVK--KLKDYAFIHFDERDGAVKAMEEMNGKDLE 307 Query: 229 XXNVRLSWGRSPSNKQTQPQEATQ 300 N+ + + + P K+ + + Q Sbjct: 308 GENIEIVFAKPPDQKRKERKAQRQ 331
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 29.3 bits (64), Expect = 8.7 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 52 FVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 159 FVGGL + L+Q FA +G+V+ K+ + G Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETG 46
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 29.3 bits (64), Expect = 8.7 Identities = 14/48 (29%), Positives = 28/48 (58%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 +++G L NV E +++ F+ YG ++ V + G GFV++ + A+ Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNG--YGFVEFEDSRDAD 49
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 29.3 bits (64), Expect = 8.7 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 6/53 (11%) Frame = +1 Query: 37 NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV------GKRCGFVQYAN 177 ++ ++VG L V +DAL+ +F+ G+VV K+ + GFV Y++ Sbjct: 186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSS 238
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 29.3 bits (64), Expect = 8.7 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 6/53 (11%) Frame = +1 Query: 37 NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV------GKRCGFVQYAN 177 ++ ++VG L V +DAL+ +F+ G+VV K+ + GFV Y++ Sbjct: 192 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSS 244
>CWC2_KLULA (Q6CT50) Pre-mRNA-splicing factor CWC2| Length = 337 Score = 29.3 bits (64), Expect = 8.7 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 9/60 (15%) Frame = +1 Query: 40 NTTIFVGG---------LDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 192 N ++VGG L P+ E+ +K F GE+ V+ K C FV++ + ++E Sbjct: 135 NRVLYVGGITGALNNKTLKPHQIENRVKYKFGKLGELDSVRYVESKNCAFVKFKLQCNSE 194
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 29.3 bits (64), Expect = 8.7 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 6/48 (12%) Frame = +1 Query: 49 IFVGGLDPNVTEDALKQVFAPYGEV---VHVKIPVGKRC---GFVQYA 174 +F+GGL T+D+L++ F +G++ V ++ P KR GFV Y+ Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYS 76
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 29.3 bits (64), Expect = 8.7 Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 6/94 (6%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG------FVQYANRPSAEX 195 P +FV L+P ++ L+ +F+ +G ++ ++ KR G F+++ N+ E Sbjct: 245 PPENVLFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQ 304 Query: 196 XXXXXXXXXXXXXNVRLSWGRSPSNKQTQPQEAT 297 + + + +S S + AT Sbjct: 305 AYFKMQGVLIDDHRIHVDFSQSVSKLSESWRNAT 338
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 29.3 bits (64), Expect = 8.7 Identities = 15/84 (17%), Positives = 39/84 (46%), Gaps = 6/84 (7%) Frame = +1 Query: 34 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG------FVQYANRPSAEX 195 P +FV L+P T++ L+ +F+ +G+++ ++ ++ G F+++ ++ S E Sbjct: 250 PPENVLFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEE 309 Query: 196 XXXXXXXXXXXXXNVRLSWGRSPS 267 + + + +S S Sbjct: 310 AYSKMDSVLIDDRRIHVDFSQSVS 333
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 29.3 bits (64), Expect = 8.7 Identities = 17/48 (35%), Positives = 28/48 (58%) Frame = +1 Query: 16 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 159 ++++ DPN T + V GL TE L++VF+ YG + V + +R G Sbjct: 109 SRANPDPN-TCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTG 155
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 29.3 bits (64), Expect = 8.7 Identities = 17/48 (35%), Positives = 28/48 (58%) Frame = +1 Query: 16 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 159 ++++ DPN T + V GL TE L++VF+ YG + V + +R G Sbjct: 111 SRANPDPN-TCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTG 157 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.130 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,636,271 Number of Sequences: 219361 Number of extensions: 1400230 Number of successful extensions: 3399 Number of sequences better than 10.0: 242 Number of HSP's better than 10.0 without gapping: 3097 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3396 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
